Clone LD44205 Report

Search the DGRC for LD44205

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:442
Well:5
Vector:pOT2
Associated Gene/TranscriptMlf-RA
Protein status:LD44205.pep: gold
Preliminary Size:1834
Sequenced Size:1602

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8295 2001-01-01 Release 2 assignment
CG8295 2002-05-20 Blastp of sequenced clone
CG8295 2003-01-01 Sim4 clustering to Release 3
Mlf 2008-04-29 Release 5.5 accounting
Mlf 2008-08-15 Release 5.9 accounting
Mlf 2008-12-18 5.12 accounting

Clone Sequence Records

LD44205.complete Sequence

1602 bp (1602 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118583

> LD44205.complete
CCACACTGACAAAGAAAATATTCGTGAAAATTCTGCATACGGAAAGAAGA
AAATTCGAGCAACAGAAAGCCAACACAATCCACAAAAATGTCTTTATTCG
GAGCGTTGATGGGTGATTTCGACGACGATCTCGGCCTTATGAACAACCAC
ATGAACCACACTATGAACGCGATGAACATGCAGATGCGCTCGATGAATCG
CCTGATGAACAGCTTTATGCCCGATCCCTTCATGCAGGTCTCGCCCTTTG
ACCAGGGATTCCAGCAGAACGCTCTCATGGAGCGTCCGCAGATGCCGGCC
ATGCCAGCCATGGGCCTCTTCGGCATGCCCATGATGCCAAACTTTAATCG
CCTGTTGAACGCTGATATTGGTGGCAATTCAGGCGCATCCTTCTGCCAGA
GCACCGTGATGACCATGTCATCGGGTCCCGATGGGCGTCCTCAGATCTAC
CAGGCCAGCACTAGTACCAAAACAGGACCGGGAGGCGTTCGTGAGACCCG
CAGGACGGTGCAGGACTCGCGCACTGGGGTGAAGAAGATGGCCATTGGTC
ATCACATCGGCGAGCGGGCACACATTATTGAGAAAGAGCAGGACATGCGC
TCAGGACAACTGGAGGAGCGCCAGGAGTTCATTAATCTGGAGGAGGGAGA
AGCCGAGCAGTTTGACAGGGAGTTTACATCGCGCGCTAGTCGCGGAGCGG
TGCAGTCAAGACATCATGCTGGTGGCATGCAGGCCATCATGCCCGCCCGT
CCAGCGGCACACACCTCGACGTTGACCATTGAGCCAGTGGAGGACGACGA
CGACGATGATGATGACTGTGTAATCCAGGAGCAGCAACCGGTTCGCTCCT
CCGCGGGCCGCCATTATTCCAGTGCGCCAACGGCACCGCAGAACAGCATA
CATCCACATCCCTATGCCGCCAATCCGAGGCGCCAACAACGTGCCGTAAA
ACATTTTCACACGGAGGACGAAGCGGCCAGCTCCTACAAGGCGGTCAAGC
GCGGCAAGAAGAAGTAGTAGAAACGTGATCATCTGTATGCCAACATCTTC
CGCATCGCACACTCAAAAACACTAGGAAGCAAAGCGTTGGGTTCTGTTCC
ATAGCAGGAAAACCAATTCAAATATTTTTTAACAAACACAATTCTTTACC
AGTTCTGTCTTATCCTGCGTGAGTCGACCAGAATGCAACACTAAAAAATG
TACAACTTCAAGATGCTATTGATGTGCACGCAGGATACAGAACAACTTGC
TTAAATTTACTTAAAACAAATGTGACTATTCAACGCCGAAATCATTACAA
CACACACTCTCAGACCTAATCGAAAAATTCAATGAAAGTAATGGAATATA
TATGAAATCGTAATTATAAGTTTGAATTATTTGATTAATTCTCAAGTTTT
TAGATTTTGTTAGCCACTAAGCTTTAAATTATGGATGCCAGTTAGCGTGC
AAATGAACACAATTGATTTGAAGGCTCCGAACGATAGAAAACAACAATTA
CCAATTCCCCAAATACATGTAATTCGTAAGGCCTAAGTAAATGTTAACGT
GAATTTAATTAAATGGTAATTACATTATAATAGTAAAAAAAAAAAAAAAA
AA

LD44205.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mlf-RB 1820 Mlf-RB 22..917 1..896 4480 100 Plus
Mlf.a 1896 Mlf.a 45..940 1..896 4480 100 Plus
Mlf-RD 1893 Mlf-RD 45..940 1..896 4480 100 Plus
Mlf-RB 1820 Mlf-RB 1066..1764 889..1587 3480 99.8 Plus
Mlf.a 1896 Mlf.a 1142..1835 894..1587 3470 100 Plus
Mlf-RD 1893 Mlf-RD 1140..1832 895..1587 3465 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11823162..11823852 1584..894 3455 100 Minus
chr2R 21145070 chr2R 11825716..11826248 896..364 2665 100 Minus
chr2R 21145070 chr2R 11826306..11826526 364..144 1105 100 Minus
chr2R 21145070 chr2R 11827179..11827321 143..1 715 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15935890..15936583 1587..894 3470 100 Minus
2R 25286936 2R 15938447..15938979 896..364 2665 100 Minus
2R 25286936 2R 15939037..15939257 364..144 1105 100 Minus
2R 25286936 2R 15939910..15940052 143..1 715 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15937089..15937782 1587..894 3470 100 Minus
2R 25260384 2R 15939646..15940178 896..364 2665 100 Minus
2R 25260384 2R 15940236..15940456 364..144 1105 100 Minus
2R 25260384 2R 15941109..15941251 143..1 715 100 Minus
Blast to na_te.dros performed 2019-03-16 20:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 1907..1973 1480..1545 125 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 882..908 793..819 117 92.6 Plus

LD44205.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:43:43 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11823162..11823849 897..1584 100 <- Minus
chr2R 11825716..11826247 365..896 100 <- Minus
chr2R 11826306..11826526 144..364 100 <- Minus
chr2R 11827179..11827321 1..143 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:10 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 1..930 88..1017 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:51 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 1..930 88..1017 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:49 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 1..930 88..1017 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:38 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 1..930 88..1017 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:34 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 1..930 88..1017 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:52 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 22..1605 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:51 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 22..1605 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:49 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 16..1599 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:38 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 22..1605 1..1584 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:34 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
Mlf-RA 16..1599 1..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:43 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15935893..15936580 897..1584 100 <- Minus
2R 15938447..15938978 365..896 100 <- Minus
2R 15939037..15939257 144..364 100 <- Minus
2R 15939910..15940052 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:43 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15935893..15936580 897..1584 100 <- Minus
2R 15938447..15938978 365..896 100 <- Minus
2R 15939037..15939257 144..364 100 <- Minus
2R 15939910..15940052 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:43 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15935893..15936580 897..1584 100 <- Minus
2R 15938447..15938978 365..896 100 <- Minus
2R 15939037..15939257 144..364 100 <- Minus
2R 15939910..15940052 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:49 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11823398..11824085 897..1584 100 <- Minus
arm_2R 11825952..11826483 365..896 100 <- Minus
arm_2R 11826542..11826762 144..364 100 <- Minus
arm_2R 11827415..11827557 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:10 Download gff for LD44205.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15937092..15937779 897..1584 100 <- Minus
2R 15939646..15940177 365..896 100 <- Minus
2R 15940236..15940456 144..364 100 <- Minus
2R 15941109..15941251 1..143 100   Minus

LD44205.hyp Sequence

Translation from 87 to 1016

> LD44205.hyp
MSLFGALMGDFDDDLGLMNNHMNHTMNAMNMQMRSMNRLMNSFMPDPFMQ
VSPFDQGFQQNALMERPQMPAMPAMGLFGMPMMPNFNRLLNADIGGNSGA
SFCQSTVMTMSSGPDGRPQIYQASTSTKTGPGGVRETRRTVQDSRTGVKK
MAIGHHIGERAHIIEKEQDMRSGQLEERQEFINLEEGEAEQFDREFTSRA
SRGAVQSRHHAGGMQAIMPARPAAHTSTLTIEPVEDDDDDDDDCVIQEQQ
PVRSSAGRHYSSAPTAPQNSIHPHPYAANPRRQQRAVKHFHTEDEAASSY
KAVKRGKKK*

LD44205.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Mlf-PA 309 CG8295-PA 1..309 1..309 1627 100 Plus
Mlf-PF 308 CG8295-PF 16..308 18..309 1519 99 Plus
Mlf-PG 288 CG8295-PG 1..288 22..309 1514 100 Plus
Mlf-PH 349 CG8295-PH 1..270 1..270 1417 100 Plus
Mlf-PB 273 CG8295-PB 1..269 1..269 1413 100 Plus

LD44205.pep Sequence

Translation from 87 to 1016

> LD44205.pep
MSLFGALMGDFDDDLGLMNNHMNHTMNAMNMQMRSMNRLMNSFMPDPFMQ
VSPFDQGFQQNALMERPQMPAMPAMGLFGMPMMPNFNRLLNADIGGNSGA
SFCQSTVMTMSSGPDGRPQIYQASTSTKTGPGGVRETRRTVQDSRTGVKK
MAIGHHIGERAHIIEKEQDMRSGQLEERQEFINLEEGEAEQFDREFTSRA
SRGAVQSRHHAGGMQAIMPARPAAHTSTLTIEPVEDDDDDDDDCVIQEQQ
PVRSSAGRHYSSAPTAPQNSIHPHPYAANPRRQQRAVKHFHTEDEAASSY
KAVKRGKKK*

LD44205.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13336-PA 385 GF13336-PA 1..267 1..264 1144 87.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22321-PA 372 GG22321-PA 1..269 1..270 1282 93 Plus
Dere\GG22321-PA 372 GG22321-PA 314..372 249..309 177 60.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22871-PA 408 GH22871-PA 1..267 1..274 924 77.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Mlf-PA 309 CG8295-PA 1..309 1..309 1627 100 Plus
Mlf-PF 308 CG8295-PF 16..308 18..309 1519 99 Plus
Mlf-PG 288 CG8295-PG 1..288 22..309 1514 100 Plus
Mlf-PH 349 CG8295-PH 1..270 1..270 1417 100 Plus
Mlf-PE 349 CG8295-PE 1..270 1..270 1417 100 Plus
Mlf-PD 376 CG8295-PD 1..270 1..270 1417 100 Plus
Mlf-PB 273 CG8295-PB 1..269 1..269 1413 100 Plus
Mlf-PC 374 CG8295-PC 16..268 18..270 1321 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21251-PA 318 GI21251-PA 1..316 1..307 967 72 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16259-PA 389 GL16259-PA 1..271 1..274 973 81.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20964-PB 315 GA20964-PB 1..315 1..308 1067 78.8 Plus
Dpse\GA20964-PA 389 GA20964-PA 1..271 1..274 971 81.7 Plus
Dpse\GA20964-PD 366 GA20964-PD 3..248 22..274 882 81.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20108-PA 373 GM20108-PA 1..269 1..270 1407 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25585-PA 147 GD25585-PA 1..146 1..160 743 90 Plus
Dsim\GD25586-PA 204 GD25586-PA 1..100 170..270 439 93.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20855-PA 410 GJ20855-PA 1..248 1..248 907 79.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22209-PA 405 GK22209-PA 1..273 1..264 986 77.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Mlf-PA 372 GE14117-PA 1..269 1..270 1326 95.9 Plus