Clone LD44207 Report

Search the DGRC for LD44207

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:442
Well:7
Vector:pOT2
Associated Gene/TranscriptDhpD-RA
Protein status:LD44207.pep: gold
Preliminary Size:1796
Sequenced Size:1529

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18143 2001-01-01 Release 2 assignment
CG18143 2002-05-20 Blastp of sequenced clone
CG18143 2008-04-29 Release 5.5 accounting
CG18143 2008-08-15 Release 5.9 accounting
CG18143 2008-12-18 5.12 accounting

Clone Sequence Records

LD44207.complete Sequence

1529 bp (1529 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118584

> LD44207.complete
ATCTTGATCATTACATTCTCAAGTCTGTCGTACAGCACGTTTAAGCCCGC
TGATAGTAAATCAGAGCAATGGCAACCGTGTTTCTTGGAACTGTCGTGCA
CACCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAG
TGGACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGG
GCAAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTC
GGACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCC
CGCAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGG
TTGAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATA
CGCCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAA
CCACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACC
TTGGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGT
CTGCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGT
CGGTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGC
CCGATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAA
GGAGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATA
TCCAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGG
ATATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAAC
GAATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGG
CACTTCTTAAAGTCCGGGGGTGCTCGGTAGCCCACTGTCCCACTTCGAAC
ACAATGCTAAGCTCCGGTCTGTGCGATGTCCAACGGCTGGTGAGCGGCGG
CGTGAGCGTAGGTCTCGGCACAGACGTTTCGGGGGGAAACTCCGTCTCGA
TTCAGGACGTTCTGCTCCGCGCATTGGACGTGTCAAAACACTTAGACTTT
TTTAAGAAGCAGAACATCCGCGGGACGGGTGTGTCCAAAACACAAGATTT
CAATTACCATCAGTTGAAGTACAAGCAGGCGCTCTACTTGGCCACTTTGG
GTGGCGCCAAAGCGCTGTCCCTCGATCACTTGACCGGAAACTTTGCTCTA
GGGAAGGATTTCGATGCTTTGTTGGTGGATGTCAGCGTCGTCGATAAACC
CTTGCGGAGGCTGAGCGTCGATGAGCTGGTGGAGAAGTTCATTTACACAG
GCAGTGACCGCAACATTGTAGAAGTTTTCGTGGCCGGCAAGCGTATTAAA
CAGGGATACCAATGAGTCACAGAGCAGTTCTACCTTTAACAGTGGCATTT
CACAAGGAAACGTATAGAGAATTTATTTTTATAGTGGCAAACATTAAATG
CTGAAACGGAAAAAAAAAAAAAAAAAAAA

LD44207.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1860 DhpD-RA 194..1704 1..1511 7555 100 Plus
aux.a 4055 aux.a 3972..4055 1511..1428 420 100 Minus
aux.b 4127 aux.b 4044..4127 1511..1428 420 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 53163..53816 1509..856 3270 100 Minus
chr3R 27901430 chr3R 53870..54143 857..584 1370 100 Minus
chr3R 27901430 chr3R 54449..54712 429..166 1320 100 Minus
chr3R 27901430 chr3R 54767..54933 167..1 835 100 Minus
chr3R 27901430 chr3R 54201..54356 584..429 780 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4227439..4228094 1511..856 3280 100 Minus
3R 32079331 3R 4228148..4228421 857..584 1370 100 Minus
3R 32079331 3R 4228727..4228990 429..166 1320 100 Minus
3R 32079331 3R 4229045..4229211 167..1 835 100 Minus
3R 32079331 3R 4228479..4228634 584..429 780 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 3968270..3968925 1511..856 3280 100 Minus
3R 31820162 3R 3968979..3969252 857..584 1370 100 Minus
3R 31820162 3R 3969558..3969821 429..166 1320 100 Minus
3R 31820162 3R 3969876..3970042 167..1 835 100 Minus
3R 31820162 3R 3969310..3969465 584..429 780 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:35:36 has no hits.

LD44207.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:36:49 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 54202..54356 429..583 100 <- Minus
chr3R 54450..54710 168..428 100 <- Minus
chr3R 54767..54933 1..167 100   Minus
chr3R 53163..53814 858..1509 100 <- Minus
chr3R 53870..54143 584..857 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:11 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 1..1347 69..1415 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:52 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 1..1347 69..1415 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:08:31 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 1..1347 69..1415 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:39 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 1..1347 69..1415 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:06 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 1..1347 69..1415 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:53 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 39..1547 1..1509 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:52 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 39..1547 1..1509 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:08:31 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 28..1536 1..1509 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:39 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
CG18143-RA 39..1547 1..1509 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:06 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 28..1536 1..1509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:49 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4227441..4228092 858..1509 100 <- Minus
3R 4228148..4228421 584..857 100 <- Minus
3R 4228480..4228634 429..583 100 <- Minus
3R 4228728..4228988 168..428 100 <- Minus
3R 4229045..4229211 1..167 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:49 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4227441..4228092 858..1509 100 <- Minus
3R 4228148..4228421 584..857 100 <- Minus
3R 4228480..4228634 429..583 100 <- Minus
3R 4228728..4228988 168..428 100 <- Minus
3R 4229045..4229211 1..167 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:49 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4227441..4228092 858..1509 100 <- Minus
3R 4228148..4228421 584..857 100 <- Minus
3R 4228480..4228634 429..583 100 <- Minus
3R 4228728..4228988 168..428 100 <- Minus
3R 4229045..4229211 1..167 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:08:31 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 54202..54356 429..583 100 <- Minus
arm_3R 54450..54710 168..428 100 <- Minus
arm_3R 54767..54933 1..167 100   Minus
arm_3R 53163..53814 858..1509 100 <- Minus
arm_3R 53870..54143 584..857 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:11 Download gff for LD44207.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3968272..3968923 858..1509 100 <- Minus
3R 3968979..3969252 584..857 100 <- Minus
3R 3969311..3969465 429..583 100 <- Minus
3R 3969559..3969819 168..428 100 <- Minus
3R 3969876..3970042 1..167 100   Minus

LD44207.pep Sequence

Translation from 68 to 1414

> LD44207.pep
MATVFLGTVVHTKSFSEFESFEGGFLAVDDAGKIIGVGQDYHAWASSNPA
HAKGLTEVHLSDYQFLMPGFVDCHIHAPQFAQLGLGLDMPLLDWLNTYTF
PLEAKFSNHQYAQQVYQGVVEATLRCGTTLASYFATNHLESTLTLAREAV
RQGQRALIGKVCSNCNSPEFYVETAEESVSATLAFVEGVRKLGSPMVMPT
ITPRFALSCSKELLKSLGDIAKRFDLHIQSHISENLEEIEMVKGIFKTSY
AGAYDEAGLLTNKTVLAHGVHLEDDEVALLKVRGCSVAHCPTSNTMLSSG
LCDVQRLVSGGVSVGLGTDVSGGNSVSIQDVLLRALDVSKHLDFFKKQNI
RGTGVSKTQDFNYHQLKYKQALYLATLGGAKALSLDHLTGNFALGKDFDA
LLVDVSVVDKPLRRLSVDELVEKFIYTGSDRNIVEVFVAGKRIKQGYQ*

LD44207.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17280-PA 448 GF17280-PA 1..444 1..446 1864 77.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11774-PA 448 GG11774-PA 1..448 1..448 2195 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18889-PA 450 GH18889-PA 1..443 1..444 1731 72.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-PA 448 CG18143-PA 1..448 1..448 2302 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24746-PA 446 GI24746-PA 1..443 1..444 1751 71.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12339-PA 448 GL12339-PA 3..444 4..445 1899 79.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14814-PA 448 GA14814-PA 3..444 4..445 1911 79.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10723-PA 448 GM10723-PA 1..448 1..448 2300 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19697-PA 448 GD19697-PA 1..448 1..448 2306 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14573-PA 444 GJ14573-PA 1..443 1..444 1719 70 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11019-PA 445 GK11019-PA 1..444 1..445 1814 75.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25370-PA 446 GE25370-PA 1..446 1..446 2091 89 Plus

LD44207.hyp Sequence

Translation from 68 to 1414

> LD44207.hyp
MATVFLGTVVHTKSFSEFESFEGGFLAVDDAGKIIGVGQDYHAWASSNPA
HAKGLTEVHLSDYQFLMPGFVDCHIHAPQFAQLGLGLDMPLLDWLNTYTF
PLEAKFSNHQYAQQVYQGVVEATLRCGTTLASYFATNHLESTLTLAREAV
RQGQRALIGKVCSNCNSPEFYVETAEESVSATLAFVEGVRKLGSPMVMPT
ITPRFALSCSKELLKSLGDIAKRFDLHIQSHISENLEEIEMVKGIFKTSY
AGAYDEAGLLTNKTVLAHGVHLEDDEVALLKVRGCSVAHCPTSNTMLSSG
LCDVQRLVSGGVSVGLGTDVSGGNSVSIQDVLLRALDVSKHLDFFKKQNI
RGTGVSKTQDFNYHQLKYKQALYLATLGGAKALSLDHLTGNFALGKDFDA
LLVDVSVVDKPLRRLSVDELVEKFIYTGSDRNIVEVFVAGKRIKQGYQ*

LD44207.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-PA 448 CG18143-PA 1..448 1..448 2302 100 Plus