Clone LD44220 Report

Search the DGRC for LD44220

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:442
Well:20
Vector:pOT2
Associated Gene/TranscriptCG31223-RA
Protein status:LD44220.pep: gold
Preliminary Size:1439
Sequenced Size:1257

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15694 2001-01-01 Release 2 assignment
CG31223 2001-12-12 Blastp of sequenced clone
CG31223 2003-01-01 Sim4 clustering to Release 3
CG31223 2008-04-29 Release 5.5 accounting
CG31223 2008-08-15 Release 5.9 accounting
CG31223 2008-12-18 5.12 accounting

Clone Sequence Records

LD44220.complete Sequence

1257 bp (1257 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070565

> LD44220.complete
CGGAAGCCGATGAAAAGTGTCACTTCTGTCGCGAGGTGTCCTTCAAGTAC
ACCTGTCCCAAGTGCAATGCTTTGTATTGCAGCGTGGGATGCTACAAGTC
CAAGGAGCACCTTAAATGTTCCGAGGCTTTCTACAAGTCCTGCATTCAGG
ACGAGCTGACCCAAAACACGGTAACGCAGGAAAGCCAGGAGGACATGCGG
AAAATATACGACATACTGAAGAGGATGAGAGAAACGGACAGTGGTTTCAA
TCCCCAGGAATTTGATACAGATGGCCTGGAAAATAGTTTGGACTCGGATG
GAGGCGAGGAAGGAGAGTCAGAAGAAGATGAGGCGGAAGAAAACGTCACC
GAGGGGGACATACTGGATGAAGACCTGGAGGAAGACATTGCAACTCGACT
GAAAGGCGTTGATATCAACGATGCGGATGAAGTTTGGAGCCGGTTAACTA
CAGAGGAGCAAGATGAGTTCCAGAAATTGATCACCAATGGAGATATCATG
AAGCTTATGCCAGACTACAAGCCCTGGTGGATCAAGCCGAAGAACTCTAA
GATTGTGATTATACCTACACCCGAAGAAGCTGCCAAGAAAGAGAGCCGTG
TTCCCGAAATTTTCGGGAGCATTGCCAAATTCTCCGATATATGCAAGAAA
ACTCCGTCTCCGTGCCTGCACTACAATTTGTGGAACATACTAAGCGCCTA
CGCCTGTGTGGCTCGTTTCTTTGGCGGCGAACAGAGGACCAATGCCAGCG
AGGCAGTGGCCCACCTTGTCAATCTCAGCGCCACCTTAAAGTACGGCACC
AACTTCGAGGATGCTGAGGACGCTATTGTCTCCGTAGAGATGGAAGCCAT
CACCACGGGTAATGGTCCTGCCGGCGCGGCTGCAGTTGGAAGTGCTGCAG
GAGGTGCCAATTTCCTCGTCGACAACAGGGAGCAGCTGCAGCAGGATGCC
CGCCAGTTGATGGCTACGAAGGAGCACAAGTTGGCCGCCCTTAGTGATGT
TCTCTATCTGCTGCAGCAGACGAAGGCAATCAGTCGCCGTAAGAATACCC
AGGAAGCCGAGTTCCAGAAGCTGTTCGCTTTGGCCAGCGGAAGTGTGCAA
TTGGATCGCACCAAACTGGCGCAACTGGTTCGCAAAATCGAGTTTATGCT
GTCGTATGTGGCGCGGGAAGAAGTCCTTTAAGCAATCCTCTAAAATAAAC
ATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

LD44220.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31223.c 1582 CG31223.c 133..1341 1..1209 6045 100 Plus
CG31223.a 1582 CG31223.a 133..1341 1..1209 6045 100 Plus
CG31223-RA 1582 CG31223-RA 133..1341 1..1209 6045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16655191..16656370 26..1205 5900 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20831276..20832459 26..1209 5920 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20572107..20573290 26..1209 5920 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:52:57 has no hits.

LD44220.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:53:48 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16655107..16655131 1..25 100 -> Plus
chr3R 16655191..16656370 26..1205 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:13 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 1..987 195..1181 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:18:56 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 1..987 195..1181 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:13:41 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 1..987 195..1181 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:04 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 1..987 195..1181 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:11:22 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 1..987 195..1181 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:08 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 1..1205 1..1205 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:18:56 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 1..1205 1..1205 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:41 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 66..1270 1..1205 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:04 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 1..1205 1..1205 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:11:22 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
CG31223-RA 66..1270 1..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:53:48 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20831192..20831216 1..25 100 -> Plus
3R 20831276..20832455 26..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:53:48 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20831192..20831216 1..25 100 -> Plus
3R 20831276..20832455 26..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:53:48 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20831192..20831216 1..25 100 -> Plus
3R 20831276..20832455 26..1205 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:41 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16656914..16656938 1..25 100 -> Plus
arm_3R 16656998..16658177 26..1205 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:24 Download gff for LD44220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20572107..20573286 26..1205 100   Plus
3R 20572023..20572047 1..25 100 -> Plus

LD44220.hyp Sequence

Translation from 2 to 1180

> LD44220.hyp
EADEKCHFCREVSFKYTCPKCNALYCSVGCYKSKEHLKCSEAFYKSCIQD
ELTQNTVTQESQEDMRKIYDILKRMRETDSGFNPQEFDTDGLENSLDSDG
GEEGESEEDEAEENVTEGDILDEDLEEDIATRLKGVDINDADEVWSRLTT
EEQDEFQKLITNGDIMKLMPDYKPWWIKPKNSKIVIIPTPEEAAKKESRV
PEIFGSIAKFSDICKKTPSPCLHYNLWNILSAYACVARFFGGEQRTNASE
AVAHLVNLSATLKYGTNFEDAEDAIVSVEMEAITTGNGPAGAAAVGSAAG
GANFLVDNREQLQQDARQLMATKEHKLAALSDVLYLLQQTKAISRRKNTQ
EAEFQKLFALASGSVQLDRTKLAQLVRKIEFMLSYVAREEVL*

LD44220.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31223-PA 328 CG31223-PA 1..328 65..392 1670 100 Plus

LD44220.pep Sequence

Translation from 194 to 1180

> LD44220.pep
MRKIYDILKRMRETDSGFNPQEFDTDGLENSLDSDGGEEGESEEDEAEEN
VTEGDILDEDLEEDIATRLKGVDINDADEVWSRLTTEEQDEFQKLITNGD
IMKLMPDYKPWWIKPKNSKIVIIPTPEEAAKKESRVPEIFGSIAKFSDIC
KKTPSPCLHYNLWNILSAYACVARFFGGEQRTNASEAVAHLVNLSATLKY
GTNFEDAEDAIVSVEMEAITTGNGPAGAAAVGSAAGGANFLVDNREQLQQ
DARQLMATKEHKLAALSDVLYLLQQTKAISRRKNTQEAEFQKLFALASGS
VQLDRTKLAQLVRKIEFMLSYVAREEVL*

LD44220.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17988-PA 394 GF17988-PA 67..394 1..328 1333 83.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24155-PA 394 GG24155-PA 67..394 1..328 1471 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17272-PA 375 GH17272-PA 68..375 1..326 995 60.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31223-PA 328 CG31223-PA 1..328 1..328 1670 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10596-PA 395 GI10596-PA 67..395 1..328 1194 73.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24279-PA 393 GL24279-PA 67..393 1..328 1187 75 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16104-PB 327 GA16104-PB 1..327 1..328 1250 73.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23137-PA 394 GM23137-PA 67..394 1..328 1685 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19376-PA 394 GD19376-PA 67..394 1..328 1697 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22951-PA 326 GJ22951-PA 1..326 1..328 1176 73.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22471-PA 391 GK22471-PA 68..391 1..328 1163 70.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25688-PA 391 GE25688-PA 67..391 1..328 1520 92.7 Plus