Clone LD44262 Report

Search the DGRC for LD44262

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:442
Well:62
Vector:pOT2
Associated Gene/TranscriptCG6401-RA
Protein status:LD44262.pep: gold
Preliminary Size:1712
Sequenced Size:1632

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6401 2001-01-01 Release 2 assignment
CG6401 2002-06-12 Blastp of sequenced clone
CG6401 2003-01-01 Sim4 clustering to Release 3
CG6401 2008-04-29 Release 5.5 accounting
CG6401 2008-08-15 Release 5.9 accounting
CG6401 2008-12-18 5.12 accounting

Clone Sequence Records

LD44262.complete Sequence

1632 bp (1632 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122191

> LD44262.complete
TGCACACTGTTGTTTTTTGCTTGCCGATTTTTGTTTAACATATTGTATTT
ATTTGTTTATATGTGGTATGTCAAATTACTGGAAGCCGCAGAACCCAAAG
AGTGAAAAATGCGCATCTGCATGGTGTCGGACTTCTTCTATCCGAGCATC
GGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTGCTCAGCTT
GGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTGCAGTGGCA
TTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCATTAAGGTG
TGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTGCCGATGTT
GCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGGCCACTCTG
CCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCCTCCTGGGG
CTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCGGACTTGTC
AGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCATGGTCAATC
ACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTCTACGCGCT
CGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTCGACACTGC
CCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATATAATCAACA
TTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATTTGCTAGCT
GGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTTATCATTGT
GGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGAAAAGACCA
ATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATAACAGGGTT
CGCGATTTCCTGGTGCGTGGCCACATCTTTTTGAATACCTCACTGACTGA
GGCCTACTGCATGGCCATCGTTGAGGCGGCTTCCTGTGGACTGCAGGTGG
TGTCCACCAGTGTGGGCGGAATTCCCGAAGTGCTACCCAAGAGTCTTATA
CTGCTGGCAGAGCCCGAAATTGATGCCATTTACGCAGCGATTCTAATTGC
CATCGACCGTCATCGAAAGAGTTCCTTTAAGGTTAGTCCATCAGTTGGCA
ATGGGCATTTGGCCTCGGACGCTAATGGAAAGGTTAAGCGGCGACGTCGC
AGGAAAGTCGATACTCCTATCTCTCCTACACAACTGCCAGCAGTCTCTGC
TCCTCCTGCGGATCAGAACAGCTCTACAGAGCCCGTAATGTGTCCATATA
GATGTAATGAGTTGGTGGAAACGCTTTACAATTGGGAGGATGTTGCCCTT
CGCACAGTAAAGGTGTACGATCGCGTTTTAAATGAACGCTCTTTCACCAC
TAGCGAGCTGGTGTTTGCGGTGTGGCAGCACGGATCCTGGTTTCTGGTGT
TCTTCGTTGTGGCCCACTTCTTAATGCGCTTGCTGGAGCTTTGGCGTCCT
CGGAAACACGTAGAGATAGCGCAGGATGTACAACGTAGGGCCAGCTAGCA
AACACCAAACGGATTCCATTCTTCCATCAACTAGCCAATTATATATTTAT
GCGATAGATTTTATAAAAAAAAAAAAAAAAAA

LD44262.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-RA 1902 CG6401-RA 59..1674 1..1616 8080 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13624985..13625904 1614..695 4600 100 Minus
chr2R 21145070 chr2R 13626266..13626513 456..209 1240 100 Minus
chr2R 21145070 chr2R 13625961..13626200 694..455 1200 100 Minus
chr2R 21145070 chr2R 13626581..13626790 210..1 1050 100 Minus
chr2RHet 3288813 chr2RHet 2213679..2213851 370..198 610 90.2 Minus
chr2RHet 3288813 chr2RHet 2303724..2303896 370..198 610 90.2 Minus
chr2RHet 3288813 chr2RHet 2213579..2213682 509..406 265 83.7 Minus
chr2RHet 3288813 chr2RHet 2303624..2303727 509..406 265 83.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17737850..17738771 1616..695 4610 100 Minus
2R 25286936 2R 17739133..17739380 456..209 1240 100 Minus
2R 25286936 2R 17738828..17739067 694..455 1200 100 Minus
2R 25286936 2R 17739448..17739657 210..1 1050 100 Minus
2R 25286936 2R 3384077..3384249 198..370 610 90.2 Plus
2R 25286936 2R 3384246..3384349 406..509 265 83.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17739049..17739970 1616..695 4610 100 Minus
2R 25260384 2R 17740332..17740579 456..209 1240 100 Minus
2R 25260384 2R 17740027..17740266 694..455 1200 100 Minus
2R 25260384 2R 17740647..17740856 210..1 1050 100 Minus
2R 25260384 2R 3384077..3384249 198..370 610 90.1 Plus
2R 25260384 2R 3384246..3384349 406..509 265 83.6 Plus
Blast to na_te.dros performed on 2019-03-15 22:31:11 has no hits.

LD44262.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:32:05 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13624985..13625904 695..1614 100 <- Minus
chr2R 13625961..13626198 457..694 100 <- Minus
chr2R 13626266..13626511 211..456 100 <- Minus
chr2R 13626581..13626790 1..210 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:18 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1440 109..1548 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:24:24 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1440 109..1548 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:16 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1440 109..1548 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:03 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1440 109..1548 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:13 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1440 109..1548 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:51:53 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1614 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:24:24 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1614 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:16 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 29..1642 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:03 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1614 1..1614 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:13 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 29..1642 1..1614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:05 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17737852..17738771 695..1614 100 <- Minus
2R 17738828..17739065 457..694 100 <- Minus
2R 17739133..17739378 211..456 100 <- Minus
2R 17739448..17739657 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:05 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17737852..17738771 695..1614 100 <- Minus
2R 17738828..17739065 457..694 100 <- Minus
2R 17739133..17739378 211..456 100 <- Minus
2R 17739448..17739657 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:05 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17737852..17738771 695..1614 100 <- Minus
2R 17738828..17739065 457..694 100 <- Minus
2R 17739133..17739378 211..456 100 <- Minus
2R 17739448..17739657 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:16 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13625357..13626276 695..1614 100 <- Minus
arm_2R 13626333..13626570 457..694 100 <- Minus
arm_2R 13626638..13626883 211..456 100 <- Minus
arm_2R 13626953..13627162 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:48:03 Download gff for LD44262.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17739051..17739970 695..1614 100 <- Minus
2R 17740027..17740264 457..694 100 <- Minus
2R 17740332..17740577 211..456 100 <- Minus
2R 17740647..17740856 1..210 100   Minus

LD44262.hyp Sequence

Translation from 108 to 1547

> LD44262.hyp
MRICMVSDFFYPSIGGVEEHVYNLSQMLLSLGHKIVVLTHAYGDCSGIRY
VTGYLKVYYLPIKVCYNQCILPTAVCNVPMLRAVLLRERVEVVHGHSAFS
ALAHEALMVGSLLGLKTVFTDHSLFGFADLSAALTNNLLEVNLGMVNHAI
CVSHIGKENTVLRARVAKHRVSVIPNAVDTALFTPDPQQRPSNDIINIVV
ASRLVYRKGIDLLAGIIPRFKNTPNINFIIVGDGPKRDLLEEIREKTNMQ
ERVQMVGAVEHNRVRDFLVRGHIFLNTSLTEAYCMAIVEAASCGLQVVST
SVGGIPEVLPKSLILLAEPEIDAIYAAILIAIDRHRKSSFKVSPSVGNGH
LASDANGKVKRRRRRKVDTPISPTQLPAVSAPPADQNSSTEPVMCPYRCN
ELVETLYNWEDVALRTVKVYDRVLNERSFTTSELVFAVWQHGSWFLVFFV
VAHFLMRLLELWRPRKHVEIAQDVQRRAS*

LD44262.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-PB 479 CG6401-PB 1..479 1..479 2464 100 Plus
CG6401-PA 479 CG6401-PA 1..479 1..479 2464 100 Plus

LD44262.pep Sequence

Translation from 108 to 1547

> LD44262.pep
MRICMVSDFFYPSIGGVEEHVYNLSQMLLSLGHKIVVLTHAYGDCSGIRY
VTGYLKVYYLPIKVCYNQCILPTAVCNVPMLRAVLLRERVEVVHGHSAFS
ALAHEALMVGSLLGLKTVFTDHSLFGFADLSAALTNNLLEVNLGMVNHAI
CVSHIGKENTVLRARVAKHRVSVIPNAVDTALFTPDPQQRPSNDIINIVV
ASRLVYRKGIDLLAGIIPRFKNTPNINFIIVGDGPKRDLLEEIREKTNMQ
ERVQMVGAVEHNRVRDFLVRGHIFLNTSLTEAYCMAIVEAASCGLQVVST
SVGGIPEVLPKSLILLAEPEIDAIYAAILIAIDRHRKSSFKVSPSVGNGH
LASDANGKVKRRRRRKVDTPISPTQLPAVSAPPADQNSSTEPVMCPYRCN
ELVETLYNWEDVALRTVKVYDRVLNERSFTTSELVFAVWQHGSWFLVFFV
VAHFLMRLLELWRPRKHVEIAQDVQRRAS*

LD44262.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13228-PA 476 GF13228-PA 1..476 1..479 2102 84.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21024-PA 479 GG21024-PA 1..479 1..479 2271 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22654-PA 470 GH22654-PA 1..468 1..477 1914 75.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-A-PB 479 CG6401-PB 1..479 1..479 2464 100 Plus
PIG-A-PA 479 CG6401-PA 1..479 1..479 2464 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21166-PA 471 GI21166-PA 1..471 1..479 1957 75.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17279-PA 481 GL17279-PA 1..481 1..479 2094 83.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19564-PA 481 GA19564-PA 1..481 1..479 2085 83.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19954-PA 479 GM19954-PA 1..479 1..479 2339 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25445-PA 479 GD25445-PA 1..479 1..479 2463 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21019-PA 472 GJ21019-PA 1..472 1..479 2032 79.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19467-PA 489 GK19467-PA 1..485 1..475 2028 79.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13967-PA 479 GE13967-PA 1..479 1..479 2290 93.7 Plus