Clone LD44267 Report

Search the DGRC for LD44267

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:442
Well:67
Vector:pOT2
Associated Gene/TranscriptCG1105-RA
Protein status:LD44267.pep: gold
Preliminary Size:1815
Sequenced Size:1795

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1105 2001-01-01 Release 2 assignment
CG1105 2002-05-17 Blastp of sequenced clone
CG1105 2003-01-01 Sim4 clustering to Release 3
CG1105 2008-04-29 Release 5.5 accounting
CG1105 2008-08-15 Release 5.9 accounting
CG1105 2008-12-18 5.12 accounting

Clone Sequence Records

LD44267.complete Sequence

1795 bp (1795 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118965

> LD44267.complete
AACAGACCGAAAAGTCGTTAACTTATTGGTGCCTTGAGTCACAGAATCTC
TAACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACAACCCGTGGAACA
CCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAGTTTACGTTCGAC
TCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCTGGGAGAAGCCAA
CACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCGAGGGCAAGACCG
AGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTACTTTAAGATCCAG
TACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGAACTACCGCCTGG
CACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTAATCTACCCTCAT
CCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATCAAGGTGACGCTT
GATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGCGTTCACAGTAAT
AGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGGAGCCATTCAAGC
TCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGCTCAGGACCGCTG
GCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTCGGGGCAGGTGCT
GCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAAATCTTACGGCAG
TGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACAAACCAGCCACGG
AGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTTAAGTGTTGGCCC
AGTCAATGGCGGCGAGTCTCGCACGTTTACGCAACAAATGGAGATTCCGG
CGCTGCCACCGACCAACCTCCTCAACTGCGGGATTATCGCTTTGGACTAC
GACCTGCATGTGGAGTGCGAGGTGAGCGGTCCGCACCGCAATCTCACTGG
CAAGGTGCCAATCACCTTGGGCACTATTCCATTGGCTGGCGTACGGCCAC
CTACTCAATTTACGGATGCTCCGTCGGCGGTTCAGTCCGAGGATCCATCG
CTGGCGCCCACACAGCCAGTGAGCCCGGCGAGCCCTCCTGGCGGCGATGG
CGTGGGTGGTGCTCTAGGCTGGAACGTGGCTGACAGTACTGGTGGTGGTT
CACTGTATCCTAATATACCGCCACCGCAGTTTGTGGAGACACAGTACCGG
GCACCAACGATCGCCGGTAGGGACGACTCCGAGCATACGCAGATGATCGG
CGACGGAGCCTTCGCACCTCGGTATCCGACTTTCCAGTTTAATAATGCCA
CAGCACCGCCAGCTAGCCAGTGATTGAATCTCTAAGCTAGACCCACAATG
ATATTCTTAAACTTTGATGTCGAACTATTTTCTTCTGGCTGTCTCTGTTT
CTGGAGGGTTAGCTTTCGCAATTTTTATCGGCTTTGCATTTATGAAATAT
TAGCTTTCCGTCCAAATAGAAAGCATAAACAGGTGCAGTCAAAATAAAAA
AGGTCTACCTATACAAAGTTTTTGAAATGCTTAACTTCTGTTTATAATTA
AATAGCTTTCGGACAGTAAATACAAAGAATTGGGTCTTTATTATTTTGAC
TGCATCTGTGTTTAATTTAATAATCGTATAAATACGCACAATTGTCAATT
CCGATTTAAACTGCTCAAATTTAATTTTTTCTGTTTTTTTTTAAGCCAGC
AATAGTGCCTAAAACTGATGTACGACTATAATCGTAATAAAACACAAAAG
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD44267.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-RA 1891 CG1105-RA 140..1891 1..1752 8760 100 Plus
CG1988-RD 2069 CG1988-RD 1883..2069 1754..1568 935 100 Minus
CG1988-RC 2147 CG1988-RC 1961..2147 1754..1568 935 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2890907..2891749 1168..326 4215 100 Minus
chr3R 27901430 chr3R 2890215..2890798 1752..1169 2890 99.7 Minus
chr3R 27901430 chr3R 2892950..2893121 172..1 845 99.4 Minus
chr3R 27901430 chr3R 2892170..2892328 326..168 795 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7064878..7065720 1168..326 4215 100 Minus
3R 32079331 3R 7064184..7064769 1754..1169 2930 100 Minus
3R 32079331 3R 7066921..7067092 172..1 860 100 Minus
3R 32079331 3R 7066141..7066299 326..168 795 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6805709..6806551 1168..326 4215 100 Minus
3R 31820162 3R 6805015..6805600 1754..1169 2930 100 Minus
3R 31820162 3R 6807752..6807923 172..1 860 100 Minus
3R 31820162 3R 6806972..6807130 326..168 795 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:07:08 has no hits.

LD44267.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:08:15 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2890215..2890798 1169..1752 99 <- Minus
chr3R 2890907..2891749 326..1168 100 <- Minus
chr3R 2892171..2892326 170..325 100 <- Minus
chr3R 2892953..2893121 1..169 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:19 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 1..1269 55..1323 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:47 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 1..1269 55..1323 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:55:22 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 1..1269 55..1323 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:19 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 1..1269 55..1323 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:18 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 1..1269 55..1323 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:25:34 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 41..1792 1..1752 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:47 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 41..1792 1..1752 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:55:22 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 45..1796 1..1752 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:19 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 41..1792 1..1752 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:18 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 45..1796 1..1752 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:15 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7064186..7064769 1169..1752 100 <- Minus
3R 7064878..7065720 326..1168 100 <- Minus
3R 7066142..7066297 170..325 100 <- Minus
3R 7066924..7067092 1..169 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:15 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7064186..7064769 1169..1752 100 <- Minus
3R 7064878..7065720 326..1168 100 <- Minus
3R 7066142..7066297 170..325 100 <- Minus
3R 7066924..7067092 1..169 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:15 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7064186..7064769 1169..1752 100 <- Minus
3R 7064878..7065720 326..1168 100 <- Minus
3R 7066142..7066297 170..325 100 <- Minus
3R 7066924..7067092 1..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:55:22 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2889908..2890491 1169..1752 100 <- Minus
arm_3R 2890600..2891442 326..1168 100 <- Minus
arm_3R 2891864..2892019 170..325 100 <- Minus
arm_3R 2892646..2892814 1..169 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:38 Download gff for LD44267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6805017..6805600 1169..1752 100 <- Minus
3R 6805709..6806551 326..1168 100 <- Minus
3R 6806973..6807128 170..325 100 <- Minus
3R 6807755..6807923 1..169 100   Minus

LD44267.pep Sequence

Translation from 54 to 1322

> LD44267.pep
MGLKGCELQLDNPWNTYYAGQTVNGQVKFTFDSPKKVRGIIIRFLGEANT
EWSEEKSVTTSEGKTENEVTQLKGHEEYFKIQYYLLGGKNSSETELPPGT
HTYPFTCALPPNLPSSFEGEFGHVRYTIKVTLDRPWKFDQDMKMAFTVIA
PVDLNLNPRVKEPFKLELEKSFCCFCCRSGPLAVITNIPQTGFVSGQVLP
ITCEVDNTSNVNLTAVKFELRKLVTFHTNQPRSEKRESKVIIANLSVGPV
NGGESRTFTQQMEIPALPPTNLLNCGIIALDYDLHVECEVSGPHRNLTGK
VPITLGTIPLAGVRPPTQFTDAPSAVQSEDPSLAPTQPVSPASPPGGDGV
GGALGWNVADSTGGGSLYPNIPPPQFVETQYRAPTIAGRDDSEHTQMIGD
GAFAPRYPTFQFNNATAPPASQ*

LD44267.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17328-PA 418 GF17328-PA 1..418 1..422 2074 92 Plus
Dana\GF17285-PA 436 GF17285-PA 5..407 6..419 619 35.4 Plus
Dana\GF17283-PA 439 GF17283-PA 4..371 6..385 560 32 Plus
Dana\GF17284-PA 415 GF17284-PA 1..393 1..410 479 31.2 Plus
Dana\GF17286-PA 440 GF17286-PA 5..421 6..416 476 31.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10147-PA 422 GG10147-PA 1..422 1..422 2219 98.3 Plus
Dere\GG24984-PA 435 GG24984-PA 5..406 6..419 591 33.9 Plus
Dere\GG24973-PA 403 GG24973-PA 1..389 1..417 523 31.8 Plus
Dere\GG24962-PA 438 GG24962-PA 4..306 6..310 508 34.9 Plus
Dere\GG24918-PA 513 GG24918-PA 5..305 6..310 463 30.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17389-PA 407 GH17389-PA 1..406 1..421 1811 81.9 Plus
Dgri\GH19257-PA 430 GH19257-PA 1..411 1..421 587 31.9 Plus
Dgri\GH19258-PA 404 GH19258-PA 5..379 6..410 496 31.1 Plus
Dgri\GH19256-PA 433 GH19256-PA 5..306 6..310 484 34.9 Plus
Dgri\GH23509-PA 408 GH23509-PA 5..385 6..419 474 30.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-PA 422 CG1105-PA 1..422 1..422 2261 100 Plus
CG18745-PA 433 CG18745-PA 5..404 6..419 610 34.5 Plus
CG18746-PA 438 CG18746-PA 4..368 6..384 539 31.3 Plus
CG18748-PC 409 CG18748-PC 11..400 11..422 521 31.2 Plus
CG18747-PB 418 CG18747-PB 5..399 6..416 490 31.4 Plus
CG2641-PA 429 CG2641-PA 5..385 6..419 476 31.2 Plus
CG10086-PA 469 CG10086-PA 3..433 4..419 448 26.8 Plus
CG2993-PA 511 CG2993-PA 5..305 6..310 439 30 Plus
CG2993-PB 524 CG2993-PB 5..305 6..310 439 30 Plus
CG2993-PC 545 CG2993-PC 5..305 6..310 439 30 Plus
CG18748-PB 359 CG18748-PB 39..350 93..422 402 30.2 Plus
CG14696-PA 457 CG14696-PA 12..386 12..369 365 27.4 Plus
CG3014-PC 488 CG3014-PC 5..301 6..314 354 28.6 Plus
CG3014-PA 488 CG3014-PA 5..301 6..314 354 28.6 Plus
Leash-PA 520 CG4674-PA 8..333 8..351 312 25.1 Plus
Vdup1-PE 342 CG7047-PE 13..298 11..309 296 26.4 Plus
Vdup1-PD 342 CG7047-PD 13..298 11..309 296 26.4 Plus
Vdup1-PA 342 CG7047-PA 13..298 11..309 296 26.4 Plus
Vdup1-PC 342 CG7047-PC 13..298 11..309 296 26.4 Plus
Vdup1-PB 342 CG7047-PB 13..298 11..309 296 26.4 Plus
CG18744-PB 410 CG18744-PB 5..347 6..343 256 24.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23546-PA 409 GI23546-PA 1..408 1..421 2002 89.3 Plus
Dmoj\GI23467-PA 430 GI23467-PA 1..411 1..418 656 36.2 Plus
Dmoj\GI23468-PA 405 GI23468-PA 5..390 6..420 524 31.1 Plus
Dmoj\GI23466-PA 427 GI23466-PA 4..416 5..417 515 31.2 Plus
Dmoj\GI24130-PA 398 GI24130-PA 4..387 5..421 451 29.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22035-PA 420 GL22035-PA 1..420 1..422 2042 89.6 Plus
Dper\GL12155-PA 435 GL12155-PA 5..408 6..421 576 33.9 Plus
Dper\GL12153-PA 403 GL12153-PA 4..306 6..310 530 33.6 Plus
Dper\GL12154-PA 435 GL12154-PA 1..404 1..412 491 30.6 Plus
Dper\GL12457-PA 430 GL12457-PA 5..386 6..419 482 30.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10727-PA 420 GA10727-PA 1..420 1..422 2043 89.8 Plus
Dpse\GA15063-PA 435 GA15063-PA 5..408 6..421 578 34.1 Plus
Dpse\GA15064-PA 431 GA15064-PA 4..306 6..310 532 33.9 Plus
Dpse\GA26206-PC 435 GA26206-PC 1..404 1..412 487 30.6 Plus
Dpse\GA15065-PA 407 GA15065-PA 5..384 6..412 466 31 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10515-PA 422 GM10515-PA 1..422 1..422 2238 99.3 Plus
Dsec\GM10459-PA 435 GM10459-PA 5..406 6..419 595 35.1 Plus
Dsec\GM10458-PA 406 GM10458-PA 1..397 1..422 526 31.1 Plus
Dsec\GM10457-PA 438 GM10457-PA 4..306 6..310 511 33.9 Plus
Dsec\GM10460-PA 417 GM10460-PA 27..394 23..412 474 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24566-PA 161 GD24566-PA 1..161 262..422 841 99.4 Plus
Dsim\GD19463-PA 435 GD19463-PA 5..406 6..419 593 34.8 Plus
Dsim\GD19461-PA 438 GD19461-PA 4..409 6..414 521 30.2 Plus
Dsim\GD19464-PA 417 GD19464-PA 27..394 23..412 462 32.4 Plus
Dsim\GD19457-PA 511 GD19457-PA 5..305 6..310 455 30 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24027-PA 410 GJ24027-PA 1..409 1..421 1950 88.8 Plus
Dvir\GJ10222-PA 426 GJ10222-PA 1..406 1..421 548 32.6 Plus
Dvir\GJ10223-PA 406 GJ10223-PA 5..383 6..412 530 32.9 Plus
Dvir\GJ10221-PA 431 GJ10221-PA 4..412 5..414 516 33.3 Plus
Dvir\GJ10953-PA 391 GJ10953-PA 4..370 5..419 450 29.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10823-PA 425 GK10823-PA 1..421 1..418 1960 88.7 Plus
Dwil\GK11060-PA 431 GK11060-PA 1..407 1..418 615 34.2 Plus
Dwil\GK11059-PA 430 GK11059-PA 5..303 6..310 540 36.5 Plus
Dwil\GK11061-PA 412 GK11061-PA 5..392 6..414 537 32.3 Plus
Dwil\GK12020-PA 424 GK12020-PA 5..375 6..410 454 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25824-PA 422 GE25824-PA 1..421 1..421 2191 97.1 Plus
Dyak\GE25773-PA 435 GE25773-PA 5..406 6..419 587 33.9 Plus
Dyak\GE25771-PA 438 GE25771-PA 4..306 6..310 511 34.2 Plus
Dyak\GE25774-PA 413 GE25774-PA 5..390 6..412 490 32.4 Plus
Dyak\GE25772-PA 388 GE25772-PA 2..374 23..417 469 30.7 Plus

LD44267.hyp Sequence

Translation from 54 to 1322

> LD44267.hyp
MGLKGCELQLDNPWNTYYAGQTVNGQVKFTFDSPKKVRGIIIRFLGEANT
EWSEEKSVTTSEGKTENEVTQLKGHEEYFKIQYYLLGGKNSSETELPPGT
HTYPFTCALPPNLPSSFEGEFGHVRYTIKVTLDRPWKFDQDMKMAFTVIA
PVDLNLNPRVKEPFKLELEKSFCCFCCRSGPLAVITNIPQTGFVSGQVLP
ITCEVDNTSNVNLTAVKFELRKLVTFHTNQPRSEKRESKVIIANLSVGPV
NGGESRTFTQQMEIPALPPTNLLNCGIIALDYDLHVECEVSGPHRNLTGK
VPITLGTIPLAGVRPPTQFTDAPSAVQSEDPSLAPTQPVSPASPPGGDGV
GGALGWNVADSTGGGSLYPNIPPPQFVETQYRAPTIAGRDDSEHTQMIGD
GAFAPRYPTFQFNNATAPPASQ*

LD44267.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-PA 422 CG1105-PA 1..422 1..422 2261 100 Plus
CG18745-PA 433 CG18745-PA 5..404 6..419 610 34.5 Plus
CG18746-PA 438 CG18746-PA 4..368 6..384 539 31.3 Plus
CG18748-PC 409 CG18748-PC 11..400 11..422 521 31.2 Plus
CG18747-PB 418 CG18747-PB 5..399 6..416 490 31.4 Plus