Clone LD44273 Report

Search the DGRC for LD44273

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:442
Well:73
Vector:pOT2
Associated Gene/TranscriptCG9318-RA
Protein status:LD44273.pep: gold
Preliminary Size:2926
Sequenced Size:2574

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9318 2001-11-02 Blastp of sequenced clone
CG9318 2003-01-01 Sim4 clustering to Release 3
CG9318 2008-04-29 Release 5.5 accounting
CG9318 2008-08-15 Release 5.9 accounting
CG9318 2008-12-18 5.12 accounting

Clone Sequence Records

LD44273.complete Sequence

2574 bp (2574 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069665

> LD44273.complete
CTACAGTGCTGACGTTCGGCAAAAAAGAGGAAACGTAGTAAAAACACTCG
AAAAACTCCGTATATTCCGATAAATATCCAGATAGTACGGTTTGTGCGTG
GCCCGCCGATCCGGAAAGTGTGGCAGAGAATCGCGGACACGGCCACGTTG
TGATTACAACCCGTACAAGTAAAGGAAGAAGGTCTGCTACTCCTGCCGTT
CGTTGGTTACCCCAATTCGAGATGATCCTGCTATCCGGACTTCTGCCGCT
CCTGGGCGTCGTTCTCTTGCACCTTGCGACCCCGACACAGGCCTTCTATC
TGCCCGGACTGGCACCGGTCAATTTCTGCAAGAAAACCGACGTCTCATCC
ACATGCAAGTCGGAAATCTTGTTGTACGTCAACCGCTTAAACACTGAGGA
ATCCGTAATACCCTATGAGTACCATCACTTCGACTTTTGTTTGGGCGAGG
AGCAGAACTCACCGGTGGAGAATCTGGGACAGGTTGTGTTCGGAGAGCGA
ATTCGTCCAGGACCCTATAAAATTCAGTTCTTGGAAAACCAGCAATGTGC
GACCACCTGTGTCAAGACTTACAAAGGAGACGATCCGGCTAGCAACCGTC
GTATGATGGTTCTTAAGAAAGGAATCAGCTTGAACTACCAACATCATTGG
ATTGTGGACAACATGCCGGTTACATGGTGCTACCCACTGGAGAACGGCAA
GCAATACTGCGGAATTGGTTTTCCCATGGGTTGTCTAGTTCGCAGTGATG
GCGAGGGTTGTCCCATCAACTCTATATATAACCAGCCAATGCATTATTAT
CCATTCAACCATGTGGATCTCGAGATTACTTATCACAGTGGACAGTCGGA
GGACTGGGGAATTCAGTTCGGCAACAGTGGACGCATAATCTCTGTAAAAG
TGACTCCCAAATCTATTAAGCACACCGATAAGGAAAACCCCAATTGCTTG
AGCACAGAGCCACTGGCAATCAGTGAGAACTCTTTAAAGGCTGGAGAACA
GCTGGAAATTGTCTACACGTACAGCGTGAAGTTTGTAAAGAACGATTCTA
TCAAATGGTCATCACGTTGGGACTACATTTTGGAATCCATGCCGCACACG
AATATCCAGTGGTTCTCCATTCTCAACTCCCTGGTTATTGTCCTTTTCCT
GAGTGGCATGGTGGCAATGATAATGCTGCGTACGTTGCACAAAGATATAG
CCCGCTATAATCAGATGGATAGCGGTGAGGATGCCCAGGAGGAGTTTGGC
TGGAAACTGGTACATGGTGATGTGTTCAGGCCGCCGCGGAAGGGCATGCT
GTTGTCGGTATTCCTGGGTTCGGGTGTACAGGTGCTTGTGATGGCCATGA
TCACCTTAGCATTTGCCTGCCTGGGATTCTTGTCCCCAGCCAATCGGGGA
GCCCTGATGACCTGTTCCATGGTCTTGTTTGTTTCGTTGGGTACACCGGC
TGGTTACGTGTCTGCGCGTATCTACAAGAGTTTCGGTGGGCTGAAATGGA
AGAGTAATGTCATCCTTACCTCGATCGTTTGCCCTGGTGTGGTCTTCTCA
TTGTTCTTCGTCATGAACCTGGTGCTGTGGGGGGAAAATAGCTCCGGAGC
TGTGCCATTTAGCACGCTAATTGCTCTGCTTGCCTTGTGGTTTGGCGTCT
CTGTGCCACTAACCTTTGTAGGAGCTTACTTTGGATTCCGCAAGCGCGCA
TTGGAGCACCCTGTGCGTACCAACCAGATTCCCCGTCAGATTCCGGACCA
ATCGATCTACACACAGCCTATTCCTGGAATCGTTATGGGCGGCGTTCTAC
CCTTTGGCTGCATCTTCATTCAGCTGTTCTTTATCCTGAGCTCGCTGTGG
TCCAGCCAGATTTACTACATGTTCGGTTTTCTGTTCCTGGTCTTTGTCAT
ATTGGTCATCACATGCTCGGAGACCACCATTCTGCTGTGCTACTTTCACT
TGTGTGCGGAGGACTATCACTGGTGGTGGCGCTCCTTCCTGACGTCCGGC
TTCACAGCAGTCTATCTGTTCATATACTGCTGCCACTACTTCGTCACAAA
GCTTTCGATCAAGGACAGTGCCTCGACGTTCCTGTATTTCGGCTACACGG
CCATTATGGTATTCCTGTTCTTCTTGCTGACCGGCACCATCGGGTTCTTC
GCGTGCTTTTGGTTCATACGTAAGATCTACAGTGTTGTCAAGGTGGATTA
AACCGCATAATTCAAGAAGGAGCTCGTGCGAATGTATTTTTGTATGTGTA
GCCACAAATTTACACTTAAGCCTAATGTGTGTGTGATTTCTGCGCTGTGC
GCCCGGCACAGACAGTTTTCTGTTTACTATAATTACGATTGATATGTGTA
TAATAACATATGTTTGTATCAGGCAAGGAACAGTGGAGTAACGAAGCGCG
CAATAATTTTTAAGCAGTAAACAGCGAACGAGTTGGAGTTAAAACGACTT
GAAGCATCTTTTGTATAGCTCTTCGTTCTGTTAATCTTTAGGCGTAAAAT
TTAGCATTGTCCATTTCCCAGCTCTAGCAACGATTCCAAGAAAAGAAGAA
ATTATCAAAAAAAAAAAAAAAAAA

LD44273.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9318-RA 2916 CG9318-RA 103..2671 1..2569 12830 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20730271..20731253 1537..555 4915 100 Minus
chr2L 23010047 chr2L 20729138..20729996 2556..1698 4295 100 Minus
chr2L 23010047 chr2L 20732419..20732777 359..1 1765 99.4 Minus
chr2L 23010047 chr2L 20731315..20731511 554..358 985 100 Minus
chr2L 23010047 chr2L 20730056..20730217 1698..1537 810 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:39:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20731778..20732760 1537..555 4915 100 Minus
2L 23513712 2L 20730632..20731503 2569..1698 4345 99.9 Minus
2L 23513712 2L 20733926..20734284 359..1 1795 100 Minus
2L 23513712 2L 20732822..20733018 554..358 985 100 Minus
2L 23513712 2L 20731563..20731724 1698..1537 810 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20731778..20732760 1537..555 4915 100 Minus
2L 23513712 2L 20730632..20731503 2569..1698 4345 99.8 Minus
2L 23513712 2L 20733926..20734284 359..1 1795 100 Minus
2L 23513712 2L 20732822..20733018 554..358 985 100 Minus
2L 23513712 2L 20731563..20731724 1698..1537 810 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:07:57 has no hits.

LD44273.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:08:50 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20730057..20730216 1538..1697 100 <- Minus
chr2L 20729138..20729996 1698..2556 100 <- Minus
chr2L 20730271..20731253 555..1537 100 <- Minus
chr2L 20731315..20731509 360..554 100 <- Minus
chr2L 20732419..20732777 1..359 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:20 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 1..1980 222..2201 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:25 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 1..1980 222..2201 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:38 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 1..1980 222..2201 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:03:45 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 1..1980 222..2201 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:23 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 1..1980 222..2201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:22 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 27..2582 1..2556 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:25 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 27..2582 1..2556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:38 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 26..2581 1..2556 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:03:45 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 27..2582 1..2556 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:23 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
CG9318-RA 26..2581 1..2556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:50 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20731564..20731723 1538..1697 100 <- Minus
2L 20730645..20731503 1698..2556 100 <- Minus
2L 20731778..20732760 555..1537 100 <- Minus
2L 20732822..20733016 360..554 100 <- Minus
2L 20733926..20734284 1..359 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:50 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20731564..20731723 1538..1697 100 <- Minus
2L 20730645..20731503 1698..2556 100 <- Minus
2L 20731778..20732760 555..1537 100 <- Minus
2L 20732822..20733016 360..554 100 <- Minus
2L 20733926..20734284 1..359 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:50 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20731564..20731723 1538..1697 100 <- Minus
2L 20730645..20731503 1698..2556 100 <- Minus
2L 20731778..20732760 555..1537 100 <- Minus
2L 20732822..20733016 360..554 100 <- Minus
2L 20733926..20734284 1..359 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:38 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20730645..20731503 1698..2556 100 <- Minus
arm_2L 20731564..20731723 1538..1697 100 <- Minus
arm_2L 20731778..20732760 555..1537 100 <- Minus
arm_2L 20732822..20733016 360..554 100 <- Minus
arm_2L 20733926..20734284 1..359 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:07 Download gff for LD44273.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20731564..20731723 1538..1697 100 <- Minus
2L 20730645..20731503 1698..2556 100 <- Minus
2L 20731778..20732760 555..1537 100 <- Minus
2L 20732822..20733016 360..554 100 <- Minus
2L 20733926..20734284 1..359 100   Minus

LD44273.pep Sequence

Translation from 221 to 2200

> LD44273.pep
MILLSGLLPLLGVVLLHLATPTQAFYLPGLAPVNFCKKTDVSSTCKSEIL
LYVNRLNTEESVIPYEYHHFDFCLGEEQNSPVENLGQVVFGERIRPGPYK
IQFLENQQCATTCVKTYKGDDPASNRRMMVLKKGISLNYQHHWIVDNMPV
TWCYPLENGKQYCGIGFPMGCLVRSDGEGCPINSIYNQPMHYYPFNHVDL
EITYHSGQSEDWGIQFGNSGRIISVKVTPKSIKHTDKENPNCLSTEPLAI
SENSLKAGEQLEIVYTYSVKFVKNDSIKWSSRWDYILESMPHTNIQWFSI
LNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSGEDAQEEFGWKLVHGD
VFRPPRKGMLLSVFLGSGVQVLVMAMITLAFACLGFLSPANRGALMTCSM
VLFVSLGTPAGYVSARIYKSFGGLKWKSNVILTSIVCPGVVFSLFFVMNL
VLWGENSSGAVPFSTLIALLALWFGVSVPLTFVGAYFGFRKRALEHPVRT
NQIPRQIPDQSIYTQPIPGIVMGGVLPFGCIFIQLFFILSSLWSSQIYYM
FGFLFLVFVILVITCSETTILLCYFHLCAEDYHWWWRSFLTSGFTAVYLF
IYCCHYFVTKLSIKDSASTFLYFGYTAIMVFLFFLLTGTIGFFACFWFIR
KIYSVVKVD*

LD44273.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14550-PA 663 GF14550-PA 24..663 20..659 3271 94.2 Plus
Dana\GF23049-PA 625 GF23049-PA 21..625 25..659 1341 42.2 Plus
Dana\GF10453-PA 599 GF10453-PA 48..599 46..659 691 29.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21552-PA 659 GG21552-PA 1..659 1..659 3460 98.2 Plus
Dere\GG23874-PA 630 GG23874-PA 26..630 25..659 1342 42.3 Plus
Dere\GG14121-PA 592 GG14121-PA 41..592 46..659 688 29.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10847-PA 659 GH10847-PA 22..659 23..659 3101 89.5 Plus
Dgri\GH11109-PA 626 GH11109-PA 15..626 18..659 1345 42.6 Plus
Dgri\GH15015-PA 585 GH15015-PA 34..585 46..659 678 29.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
TM9SF2-PB 659 CG9318-PB 1..659 1..659 3528 100 Plus
TM9SF2-PA 659 CG9318-PA 1..659 1..659 3528 100 Plus
TM9SF4-PB 630 CG7364-PB 9..630 9..659 1356 41.8 Plus
TM9SF4-PA 630 CG7364-PA 9..630 9..659 1356 41.8 Plus
TM9SF3-PA 592 CG10590-PA 41..592 46..659 767 29.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19598-PA 657 GI19598-PA 9..657 11..659 3114 88.1 Plus
Dmoj\GI18231-PA 626 GI18231-PA 22..626 25..659 1370 43.3 Plus
Dmoj\GI13177-PA 585 GI13177-PA 34..585 46..659 669 29.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19593-PA 624 GL19593-PA 26..624 24..659 3013 88.8 Plus
Dper\GL21220-PA 634 GL21220-PA 30..634 25..659 1341 42.4 Plus
Dper\GL11985-PA 590 GL11985-PA 40..590 46..659 633 29 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21696-PA 661 GA21696-PA 26..661 24..659 3256 94.7 Plus
Dpse\GA20298-PA 634 GA20298-PA 30..634 25..659 1341 42.4 Plus
Dpse\GA10420-PA 591 GA10420-PA 40..591 46..659 722 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23311-PA 659 GM23311-PA 1..659 1..659 3515 99.7 Plus
Dsec\GM15157-PA 630 GM15157-PA 12..630 6..659 1366 42.4 Plus
Dsec\GM13907-PA 592 GM13907-PA 41..592 46..659 697 29.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21683-PA 659 GD21683-PA 1..659 1..659 3517 99.8 Plus
Dsim\GD23917-PA 623 GD23917-PA 12..623 6..659 1339 42.1 Plus
Dsim\GD13184-PA 645 GD13184-PA 41..645 46..659 681 27.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17423-PA 657 GJ17423-PA 5..657 8..659 3137 88.4 Plus
Dvir\GJ18139-PA 626 GJ18139-PA 22..626 25..659 1359 43.1 Plus
Dvir\GJ11952-PA 585 GJ11952-PA 34..585 46..659 675 29.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14911-PA 665 GK14911-PA 20..665 13..659 3167 90.1 Plus
Dwil\GK18190-PA 630 GK18190-PA 23..630 22..659 1338 42 Plus
Dwil\GK15232-PA 666 GK15232-PA 16..634 14..657 1232 41.4 Plus
Dwil\GK16877-PA 586 GK16877-PA 35..586 46..659 702 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13546-PA 659 GE13546-PA 1..659 1..659 3458 98 Plus
Dyak\GE18677-PA 630 GE18677-PA 26..630 25..659 1342 42.3 Plus
Dyak\GE20545-PA 593 GE20545-PA 42..593 46..659 694 29.9 Plus

LD44273.hyp Sequence

Translation from 221 to 2200

> LD44273.hyp
MILLSGLLPLLGVVLLHLATPTQAFYLPGLAPVNFCKKTDVSSTCKSEIL
LYVNRLNTEESVIPYEYHHFDFCLGEEQNSPVENLGQVVFGERIRPGPYK
IQFLENQQCATTCVKTYKGDDPASNRRMMVLKKGISLNYQHHWIVDNMPV
TWCYPLENGKQYCGIGFPMGCLVRSDGEGCPINSIYNQPMHYYPFNHVDL
EITYHSGQSEDWGIQFGNSGRIISVKVTPKSIKHTDKENPNCLSTEPLAI
SENSLKAGEQLEIVYTYSVKFVKNDSIKWSSRWDYILESMPHTNIQWFSI
LNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSGEDAQEEFGWKLVHGD
VFRPPRKGMLLSVFLGSGVQVLVMAMITLAFACLGFLSPANRGALMTCSM
VLFVSLGTPAGYVSARIYKSFGGLKWKSNVILTSIVCPGVVFSLFFVMNL
VLWGENSSGAVPFSTLIALLALWFGVSVPLTFVGAYFGFRKRALEHPVRT
NQIPRQIPDQSIYTQPIPGIVMGGVLPFGCIFIQLFFILSSLWSSQIYYM
FGFLFLVFVILVITCSETTILLCYFHLCAEDYHWWWRSFLTSGFTAVYLF
IYCCHYFVTKLSIKDSASTFLYFGYTAIMVFLFFLLTGTIGFFACFWFIR
KIYSVVKVD*

LD44273.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9318-PB 659 CG9318-PB 1..659 1..659 3528 100 Plus
CG9318-PA 659 CG9318-PA 1..659 1..659 3528 100 Plus
TM9SF4-PB 630 CG7364-PB 9..630 9..659 1356 41.8 Plus
TM9SF4-PA 630 CG7364-PA 9..630 9..659 1356 41.8 Plus
CG10590-PA 592 CG10590-PA 41..592 46..659 767 29.6 Plus