Clone LD44305 Report

Search the DGRC for LD44305

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:443
Well:5
Vector:pOT2
Associated Gene/TranscriptCG8223-RA
Protein status:LD44305.pep: gold
Preliminary Size:1972
Sequenced Size:1997

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8223 2001-01-01 Release 2 assignment
CG8223 2001-11-29 Blastp of sequenced clone
CG8223 2003-01-01 Sim4 clustering to Release 3
CG8223 2008-04-29 Release 5.5 accounting
CG8223 2008-08-15 Release 5.9 accounting
CG8223 2008-12-18 5.12 accounting

Clone Sequence Records

LD44305.complete Sequence

1997 bp (1997 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069666

> LD44305.complete
CCACCAGTTCGTTCACATTGTCGCTATTTTTCAGCATTTCGCGGGATCTG
TATTTTTTATAGGCGAATATTGAAATTTGCATGGTCTAACATTGATTATA
GTGTTGTATTCACCGAATATTTATTGGTTTTACTGTCCATTGCTTTGAAA
GCAATAGAAATAATTGAGGATCAACTATTTATTTAACAACTCAAAATGTC
TGCTGAAGCCGAAGCAATCGTCACAACGGCAACTGCCGATGTATCATCCC
CAAGCAAGACAGTGGCTGTGGAGCCCGTTGCTGCTGATACAACTCCGGAC
AATGCTCCGGCTGTGTCCACCGAGGGAAGCGGAAAGGCAGAGCAGGAACG
GGCAGAGAAAATACTTAAAGGCAAGGAGCTGTTCAGCCAGGGATCGCGCA
ACTTCCTGGTCAAGAGCTACGACGAGGCAGCTGACGAGCTGAGCCAGGTG
TGCCAACTGTACGAGGAAGTCTACGGGGAACTGGCCGATGAGCTGGGTCA
GCCCCTATTGCTCTATGCAAAGGCATTAATTGCAATGGCCTTGGACGAGA
ACAAAGTGATTGATGTGCCTGACGAGGCTGCCGATGATGATGACGAGGAT
GTGGACGACGACGAGGAAGAAAGTGCCGAAGATGGAGCGGCTAAGAAGGA
GGAAAAGAAAGACACCAAGGAGGCAGCAAATGGTGCAAGCAGCTCTAACG
GCAAGGAACTGGACACCATCAAGGAAGGGTCCGATGAGGCAGACTCTACC
GGGGAAGCCGAGCAAGCTCAAAGTGATGAAAAGCCCTCTAAGAAGGTACC
GACCGGCGTGGATGAGGTCAGCAGCAGCAATGGCGGTGGCGGAGCTGCCG
TCAACGATGACGAGCGACCGAGCACATCGAATGGTGAGGTCACAGCTAGT
TGTTCCAATGGTGCAGCACCTGCTGTAGAGGAAGAACCCGAAGAAGAGGA
AGGAGTTAGCGGAAGTTTGCAGTTGGCCTGGGAAATTCTAGAGGCGGCTG
CTCAGATCTTCTCGCGCCAAGGGCTCAGTGGACTCCCCTACTTGGCTGAG
GTTCAGACTGAGCTGGCTAACATTGAGTTTGAGAATGGAATACTAGAGGC
GGCACGCGAAGATTATGAGAAAGCACTGAAGATCCACGGAGAGCTGCCCA
CAAGAAACCGACGTGCTTTGGCCGAGTTGCATTACAAGATCGGGCTGACC
TATTTGATGCAGCAACTCAACAAGGAAGGAGCGACAGCACTGCGTCAATC
AAGCGTGTTGATCGAGGAGGAAATCGCCGAGATTAAGGGCAAGGACGAAC
CTAGCGAGCGCGACAGAAACAATATGTTGGATTTGGAGGAAACTAAGCAG
GAGATTTTGGCCAAGATCCAGGAAATCGAAGAGATGCAGGCCCAGACCAT
TGCTGAAGTGCGAGCTGCCCTGGATAGCTACATCAAGCCAATGAGCAGTG
GTGATGCAGCTGCTGCCTCCTCCTCGTCGTCGTCGTCAGCCAATGGAGCC
GCCAGCTCTTCGTCGTCCTCCTCCAAAGGTGCTGCGGCGGCCTCCTCATC
GACCATTAGCAGCAGTTCGGCCAAGCCCACAGACATCACACATTTGATCA
AGCGCAAGAAGCCGGAGGATCCCAGCTCGGAGGCTGAGGCCCTGTGCTCG
CCGGCCAAGCGTGCCGCCGTCTAGGGGAATCATTCCAGTTGCCCAGTGGC
ACACCAGCACCCACTCACAACCAAGCCCTTAAAATACACCACACTCATCG
GCTACTTAAACCAACCCACACGCATTAAACACCATTCAACTGTCCTATAC
CTCGAACCTACATATTTATGCTACTTGTTTGCTGTTTTCTACCAAAATTC
TCTGTAAGTCTGTAAGTTTACAATCACAATTAGTGCTAAGTGCGTACATA
AAATAATGTTTTGTATTAAAAGAAAAACTAAGTAGGAAGGCAAAAAGTGT
ACACAATAAATACGGGAGATTTCCCCCAGAAAAAAAAAAAAAAAAAA

LD44305.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-RA 2052 CG8223-RA 65..2046 1..1982 9910 100 Plus
CG8223.a 1880 CG8223.a 70..1877 175..1982 9040 100 Plus
CG8223.b 1880 CG8223.b 70..1877 175..1982 9040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4578478..4579082 513..1117 3010 99.8 Plus
chr3R 27901430 chr3R 4579483..4580068 1394..1979 2915 99.8 Plus
chr3R 27901430 chr3R 4578021..4578362 171..512 1695 99.7 Plus
chr3R 27901430 chr3R 4579144..4579422 1117..1395 1395 100 Plus
chr3R 27901430 chr3R 4573784..4573957 1..174 870 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8752514..8753118 513..1117 3025 100 Plus
3R 32079331 3R 8753519..8754107 1394..1982 2945 100 Plus
3R 32079331 3R 8752057..8752398 171..512 1695 99.7 Plus
3R 32079331 3R 8753180..8753458 1117..1395 1395 100 Plus
3R 32079331 3R 8747818..8747991 1..174 870 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8493345..8493949 513..1117 3025 100 Plus
3R 31820162 3R 8494350..8494938 1394..1982 2945 100 Plus
3R 31820162 3R 8492888..8493229 171..512 1695 99.7 Plus
3R 31820162 3R 8494011..8494289 1117..1395 1395 100 Plus
3R 31820162 3R 8488649..8488822 1..174 870 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:07:24 has no hits.

LD44305.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:08:22 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4573784..4573957 1..174 100 -> Plus
chr3R 4578025..4578362 175..512 100 -> Plus
chr3R 4578478..4579082 513..1117 99 -> Plus
chr3R 4579145..4579422 1118..1395 100 -> Plus
chr3R 4579485..4580068 1396..1979 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:24 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 1..1479 196..1674 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:39 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 1..1479 196..1674 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:55:58 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 1..1479 196..1674 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:00 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 1..1479 196..1674 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:30 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 1..1479 196..1674 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:06 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 13..1991 1..1979 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:38 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 13..1991 1..1979 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:55:58 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 21..1999 1..1979 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:00 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 13..1991 1..1979 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:30 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 21..1999 1..1979 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:22 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8747818..8747991 1..174 100 -> Plus
3R 8752061..8752398 175..512 100 -> Plus
3R 8752514..8753118 513..1117 100 -> Plus
3R 8753181..8753458 1118..1395 100 -> Plus
3R 8753521..8754104 1396..1979 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:22 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8747818..8747991 1..174 100 -> Plus
3R 8752061..8752398 175..512 100 -> Plus
3R 8752514..8753118 513..1117 100 -> Plus
3R 8753181..8753458 1118..1395 100 -> Plus
3R 8753521..8754104 1396..1979 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:22 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8747818..8747991 1..174 100 -> Plus
3R 8752061..8752398 175..512 100 -> Plus
3R 8752514..8753118 513..1117 100 -> Plus
3R 8753181..8753458 1118..1395 100 -> Plus
3R 8753521..8754104 1396..1979 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:55:58 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4573540..4573713 1..174 100 -> Plus
arm_3R 4577783..4578120 175..512 100 -> Plus
arm_3R 4578236..4578840 513..1117 100 -> Plus
arm_3R 4578903..4579180 1118..1395 100 -> Plus
arm_3R 4579243..4579826 1396..1979 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:09 Download gff for LD44305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8492892..8493229 175..512 100 -> Plus
3R 8493345..8493949 513..1117 100 -> Plus
3R 8494012..8494289 1118..1395 100 -> Plus
3R 8494352..8494935 1396..1979 100   Plus
3R 8488649..8488822 1..174 100 -> Plus

LD44305.hyp Sequence

Translation from 195 to 1673

> LD44305.hyp
MSAEAEAIVTTATADVSSPSKTVAVEPVAADTTPDNAPAVSTEGSGKAEQ
ERAEKILKGKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVYGELADEL
GQPLLLYAKALIAMALDENKVIDVPDEAADDDDEDVDDDEEESAEDGAAK
KEEKKDTKEAANGASSSNGKELDTIKEGSDEADSTGEAEQAQSDEKPSKK
VPTGVDEVSSSNGGGGAAVNDDERPSTSNGEVTASCSNGAAPAVEEEPEE
EEGVSGSLQLAWEILEAAAQIFSRQGLSGLPYLAEVQTELANIEFENGIL
EAAREDYEKALKIHGELPTRNRRALAELHYKIGLTYLMQQLNKEGATALR
QSSVLIEEEIAEIKGKDEPSERDRNNMLDLEETKQEILAKIQEIEEMQAQ
TIAEVRAALDSYIKPMSSGDAAAASSSSSSSANGAASSSSSSSKGAAAAS
SSTISSSSAKPTDITHLIKRKKPEDPSSEAEALCSPAKRAAV*

LD44305.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-PB 492 CG8223-PB 1..492 1..492 2415 100 Plus
CG8223-PA 492 CG8223-PA 1..492 1..492 2415 100 Plus
tn-PC 1517 CG15105-PC 490..817 140..473 166 23.9 Plus

LD44305.pep Sequence

Translation from 195 to 1673

> LD44305.pep
MSAEAEAIVTTATADVSSPSKTVAVEPVAADTTPDNAPAVSTEGSGKAEQ
ERAEKILKGKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVYGELADEL
GQPLLLYAKALIAMALDENKVIDVPDEAADDDDEDVDDDEEESAEDGAAK
KEEKKDTKEAANGASSSNGKELDTIKEGSDEADSTGEAEQAQSDEKPSKK
VPTGVDEVSSSNGGGGAAVNDDERPSTSNGEVTASCSNGAAPAVEEEPEE
EEGVSGSLQLAWEILEAAAQIFSRQGLSGLPYLAEVQTELANIEFENGIL
EAAREDYEKALKIHGELPTRNRRALAELHYKIGLTYLMQQLNKEGATALR
QSSVLIEEEIAEIKGKDEPSERDRNNMLDLEETKQEILAKIQEIEEMQAQ
TIAEVRAALDSYIKPMSSGDAAAASSSSSSSANGAASSSSSSSKGAAAAS
SSTISSSSAKPTDITHLIKRKKPEDPSSEAEALCSPAKRAAV*

LD44305.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18188-PA 487 GF18188-PA 1..487 1..492 1797 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12951-PA 494 GG12951-PA 1..494 1..492 2420 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18579-PA 503 GH18579-PA 1..503 1..492 1659 75.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-PB 492 CG8223-PB 1..492 1..492 2415 100 Plus
CG8223-PA 492 CG8223-PA 1..492 1..492 2415 100 Plus
tn-PC 1517 CG15105-PC 490..817 140..473 166 23.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24508-PA 493 GI24508-PA 1..493 1..492 1545 72.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12480-PA 512 GL12480-PA 1..512 1..492 1542 73.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20909-PB 538 GA20909-PB 1..538 1..492 1501 70.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23761-PA 492 GM23761-PA 1..492 1..492 2471 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18572-PA 491 GD18572-PA 1..491 1..492 2430 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22682-PA 496 GJ22682-PA 1..496 1..492 1598 74.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11814-PA 497 GK11814-PA 1..497 1..492 1592 73.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25905-PA 493 GE25905-PA 1..493 1..492 2431 97.2 Plus