Clone LD44327 Report

Search the DGRC for LD44327

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:443
Well:27
Vector:pOT2
Associated Gene/TranscriptCG1503-RA
Protein status:LD44327.pep: gold
Preliminary Size:1360
Sequenced Size:1214

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1503 2001-01-01 Release 2 assignment
CG1503 2003-01-01 Sim4 clustering to Release 3
CG1503 2003-02-27 Blastp of sequenced clone
CG1503 2008-04-29 Release 5.5 accounting
CG1503 2008-08-15 Release 5.9 accounting
CG1503 2008-12-18 5.12 accounting

Clone Sequence Records

LD44327.complete Sequence

1214 bp (1214 high quality bases) assembled on 2003-02-27

GenBank Submission: BT004894

> LD44327.complete
ACTTATTAAGCAGCCAAATTTTTAACTAAAATCTTTTTGAATTCGAACTC
GAGCTATGTATTTACTTTATGTAACGCCTAGCACGCGCTGGTAAACAATT
CCAAACCCAAAAGTAGACAACAGATACACTAGCCACCCAGGAAAATACAA
CACTGCCGAGGATTATTGAAGTCAGGATGCTGGCGGCCAAAAAGGTGCTT
AAAACAAAGAACCAGATGGAGCCCCTCCAGGATAAGAAGCCCAGAGTGAA
GACCAAGCCAAATGCGAAGGGCAAGGTCAAGGAAAAGGGCACCGACAAGG
AAAAGGGTAAGTTCAAGGCCAAGGGCAACGGCAAGGGCAAGAACAAAAAC
AAGATCAGGGACTCCAAAACAAGCACCTCGCTGGCTCTGGAGCGCGGCAG
CGGAGATGGACCGCATCAGCTGGCCGAGGTGAGCCTGGTTGCGCTCCGCT
TCATGGACATCTCGCTGCGCCACTCGGATGTCCAGCTGCTTCAGTCCGCT
AACGAGGGCGTCAACGAACGCCTGGTGGCCTTCTACTACGCCTACCTTCA
GCACCGCCGTTATCGCTCCGAGTTGGATTTGCACTTCCTGAATCCGGGCC
TGGCCGCACGACTGCGCCACATGAATATGCGCCAGTTGTGGGCGATGGTG
CGCGACCGCCGTCTCAACGAGAAACAGTTCATCCTGGTGCCGCTTTCCAC
CCATCCAAGACCCCACGGACACTGGTCCCTACTGGTGATTTCGCGGCCGG
ACAGCAAGTTTTACCACTACGATTCGTTGGACAACTGTCATTCGCCGTTG
GCCGCCTCGGTGTCGGAAACTTTGCGGGCGCCCCTCGAAGCCTGGAAGTT
CGCCCTGGTCACCGGTCGCTGCCTACAGCAGGAGCGCCAAGCGGCTGGCA
AGGAAGGCTCCGGTCGCGACCCTGCATCCGGAATTCACCTGATGTGCATG
ACCGACCACGTTGCGGACTATGTAGCCAGATGCGGATACGCCACCAGTTC
GCTGCTCATCGCCGTAGACCAAATCGCAGCAATGCGCACCCACCTGGTCG
AGCTGATCCAGTCGCTCGGCGGGATTCTCCCCTCAAAGAGGGGCCACTGA
AAGAGGAGCATCTTCATGCCCTTGCGACCCTACATTCGTTTGCTTTACAT
TTGTTGACGCATAAGAAAATCAGTAAAAAATTCAAATAATGAACCTAAAA
AAAAAAAAAAAAAA

LD44327.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1503-RA 1404 CG1503-RA 40..1237 1..1198 5990 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20970777..20971485 709..1 3545 100 Minus
chrX 22417052 chrX 20970020..20970508 1196..708 2445 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21105620..21106328 709..1 3545 100 Minus
X 23542271 X 21104861..21105351 1198..708 2455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21090712..21091420 709..1 3545 100 Minus
X 23527363 X 21089953..21090443 1198..708 2455 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:08:22 has no hits.

LD44327.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:09:19 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20970020..20970506 710..1196 100 <- Minus
chrX 20970777..20971485 1..709 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:26 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 1..924 177..1100 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:47:11 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 1..924 177..1100 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:57 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 1..924 177..1100 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:38 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 1..924 177..1100 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:53:21 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 1..924 177..1100 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:59:03 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 40..1235 1..1196 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:47:11 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 40..1235 1..1196 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:57 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 40..1235 1..1196 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:38 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 40..1235 1..1196 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:21 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
CG1503-RA 42..1237 1..1196 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:19 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
X 21104863..21105349 710..1196 100 <- Minus
X 21105620..21106328 1..709 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:19 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
X 21104863..21105349 710..1196 100 <- Minus
X 21105620..21106328 1..709 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:19 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
X 21104863..21105349 710..1196 100 <- Minus
X 21105620..21106328 1..709 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:57 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20975890..20976376 710..1196 100 <- Minus
arm_X 20976647..20977355 1..709 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:55 Download gff for LD44327.complete
Subject Subject Range Query Range Percent Splice Strand
X 21089955..21090441 710..1196 100 <- Minus
X 21090712..21091420 1..709 100   Minus

LD44327.pep Sequence

Translation from 176 to 1099

> LD44327.pep
MLAAKKVLKTKNQMEPLQDKKPRVKTKPNAKGKVKEKGTDKEKGKFKAKG
NGKGKNKNKIRDSKTSTSLALERGSGDGPHQLAEVSLVALRFMDISLRHS
DVQLLQSANEGVNERLVAFYYAYLQHRRYRSELDLHFLNPGLAARLRHMN
MRQLWAMVRDRRLNEKQFILVPLSTHPRPHGHWSLLVISRPDSKFYHYDS
LDNCHSPLAASVSETLRAPLEAWKFALVTGRCLQQERQAAGKEGSGRDPA
SGIHLMCMTDHVADYVARCGYATSSLLIAVDQIAAMRTHLVELIQSLGGI
LPSKRGH*

LD44327.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21854-PA 318 GF21854-PA 75..318 58..307 935 71.7 Plus
Dana\GF19818-PA 215 GF19818-PA 10..213 88..299 337 35.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17555-PA 319 GG17555-PA 1..319 1..307 1251 79.9 Plus
Dere\GG20277-PA 215 GG20277-PA 10..213 88..299 337 35.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16114-PA 285 GH16114-PA 46..248 88..303 501 46.8 Plus
Dgri\GH22812-PA 212 GH22812-PA 7..210 88..299 324 33.5 Plus
Dgri\GH24159-PA 318 GH24159-PA 115..311 97..297 267 33.7 Plus
Dgri\GH22976-PA 212 GH22976-PA 7..210 88..299 266 29.3 Plus
Dgri\GH12897-PA 328 GH12897-PA 129..325 97..300 227 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1503-PB 307 CG1503-PB 1..307 1..307 1594 100 Plus
CG1503-PA 307 CG1503-PA 1..307 1..307 1594 100 Plus
Den1-PC 249 CG8493-PC 15..247 53..299 335 33.6 Plus
Den1-PA 215 CG8493-PA 10..213 88..299 324 35.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14319-PA 262 GI14319-PA 50..251 88..302 542 50.2 Plus
Dmoj\GI21188-PA 212 GI21188-PA 7..210 88..299 322 34 Plus
Dmoj\GI18461-PA 195 GI18461-PA 2..193 100..299 290 33 Plus
Dmoj\GI15294-PA 349 GI15294-PA 151..346 96..298 273 30.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16580-PA 300 GL16580-PA 73..284 87..302 603 53.2 Plus
Dper\GL10824-PA 215 GL10824-PA 10..213 88..299 329 34.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13447-PA 302 GA13447-PA 75..286 87..302 601 53.2 Plus
Dpse\GA21116-PA 215 GA21116-PA 10..213 88..299 333 34.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22639-PA 317 GM22639-PA 1..317 1..307 1237 82 Plus
Dsec\GM21362-PA 215 GM21362-PA 10..213 88..299 332 35.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24436-PA 316 GD24436-PA 1..316 1..307 1332 86.7 Plus
Dsim\GD10859-PA 215 GD10859-PA 10..213 88..299 332 35.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19377-PA 264 GJ19377-PA 36..245 76..302 535 47.1 Plus
Dvir\GJ20790-PA 212 GJ20790-PA 7..210 88..299 320 34.4 Plus
Dvir\GJ21548-PA 212 GJ21548-PA 7..210 88..299 309 33.5 Plus
Dvir\GJ16998-PA 377 GJ16998-PA 179..374 96..298 276 32.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22166-PA 263 GK22166-PA 58..261 88..299 326 34.4 Plus
Dwil\GK10100-PA 308 GK10100-PA 110..306 96..299 263 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15316-PA 296 GE15316-PA 1..296 1..307 1312 83.5 Plus
Dyak\GE12437-PA 215 GE12437-PA 10..213 88..299 336 35.8 Plus

LD44327.hyp Sequence

Translation from 176 to 1099

> LD44327.hyp
MLAAKKVLKTKNQMEPLQDKKPRVKTKPNAKGKVKEKGTDKEKGKFKAKG
NGKGKNKNKIRDSKTSTSLALERGSGDGPHQLAEVSLVALRFMDISLRHS
DVQLLQSANEGVNERLVAFYYAYLQHRRYRSELDLHFLNPGLAARLRHMN
MRQLWAMVRDRRLNEKQFILVPLSTHPRPHGHWSLLVISRPDSKFYHYDS
LDNCHSPLAASVSETLRAPLEAWKFALVTGRCLQQERQAAGKEGSGRDPA
SGIHLMCMTDHVADYVARCGYATSSLLIAVDQIAAMRTHLVELIQSLGGI
LPSKRGH*

LD44327.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1503-PB 307 CG1503-PB 1..307 1..307 1594 100 Plus
CG1503-PA 307 CG1503-PA 1..307 1..307 1594 100 Plus
Den1-PC 249 CG8493-PC 15..247 53..299 335 33.6 Plus
Den1-PA 215 CG8493-PA 10..213 88..299 324 35.8 Plus