Clone LD44361 Report

Search the DGRC for LD44361

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:443
Well:61
Vector:pOT2
Associated Gene/TranscriptBEAF-32-RB
Protein status:LD44361.pep: gold
Preliminary Size:1853
Sequenced Size:1559

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10159 2001-01-01 Release 2 assignment
CG10159 2001-09-19 Blastp of sequenced clone
CG10159 2003-01-01 Sim4 clustering to Release 3
BEAF-32 2008-04-29 Release 5.5 accounting
BEAF-32 2008-08-15 Release 5.9 accounting
BEAF-32 2008-12-18 5.12 accounting

Clone Sequence Records

LD44361.complete Sequence

1559 bp (1559 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058711

> LD44361.complete
CGATAAATCCACGGGTCATCGGTACAGGCTCCTCCACTTTGGCGCGGAAA
AAGTAGAAACTCTAGTTATAGCAAGGCAGTAAATCGTCTTGAAAAAAAAA
ACTATAGATAAAAATAGTGCAGGATAGGTACAGAATTTTCCCCAACCAGT
GGTTGTGCTTGTAAATAGTTTATAAACCTATTGTATATTATCTAAAATGC
TATTAAAAAATCAGCTAAAAAATATTGTTATGTTAAAAGTATTTTTATGA
TTTTGCGCTGTTGTAAAGTATGTAAACATTCTCTTATTTTCGTTTTTCAC
CTCTGTTTGCCGTTGCCTTTGTTTCCACTCTTATGTTCATGCGTTTTACA
ACACTGCAACGGCACTTGACAACACTGACTACAGCAACGCCAATATCGCA
ATAAATAAATTTGTGGAGAAAAATCACTTTTGACGTACTAATTACCTAGA
GAAAAGTATTAAAAATGCCCAAGGGTCGTGTTAGCAATGTGTGGCAGCAC
TACGATATTAACGAGGAGTGCGAAAACTTTGCGATATGCCGTTATTGCGG
CAACAATATATCGCGTGGTGGCATGGCCAGCAATTTGAAGGGCAACAATA
CGACCAATTTGTGGACGCATCTGCGGCACAAGCACAGGGACGAGGTGCTG
GTCAGTCCGGTGCAGCAACGTCCCCAGGCCCGGATGATCCCAATCATCAA
GAAAGACAAAACCGTGCGGATTACCAAGGCCAAGACGCTGAGGGAGCCGC
TGCGTGTGGCCAAGCCGAAGATCGAGTCGAACGTCGCCAATTATCTGGGC
GAGGCGGGCGCCCTGCCGCAAAAGTGGGAGGAGTACGAGCAGAACGATGA
GATTAGCGAGGACATTAAGGACATCATATACAGCGAGGATCCACTGTGCT
ATAGTCCTATACACGTGATGGATGATGAGGGCCTGGATCAGCCTGAGAAG
CAAGTGACCGTGCTAACCCATTCGACTTCACCAGCCGGTGGAAGTAGCAG
GCCCATCGGTGTTGGTTCGGGCGTACAGGCTACTGTGGTGGCCTCCACGT
CCTCCAGCAGCAGCTCGGCCAAGCAGCTGAAGAACAACCTGGAGACGTCC
ATCGAACGGCTGACCGCTGTCAGCGAACAGCTCAGCTACATCATACAACA
GAATCACGAGGAGCTCACCAAGGACGACGACTACTATTTTGCACTTAGCT
TGGTGCCCGCAATGCGCCACCTTTCGCTCAGTCGGAAGATGTACGTGCGG
TCCAAGATCCAGGATATACTGTTCAAGGAAAGTGAGGACTCAACGCTTGC
CAAGGATGAGTAGGCGGTCCATTATATACATTTACCCAGAGGAATAATAA
AACGAGGAACGAAGGAAACCATATGGTAAATGGGCAAATCAGCGTGTCGT
AATCTAGGTTAATAATTATACATATGTTATGTATTCATTTAAATTATGCT
CTTTTATCGATTGAAAATACTTACTTTGATTGTATATTTCCCAATTATAT
TTTACTTAAAACTCAAATAAAGCACTACAATAAATTAACAAAAAAAAAAA
AAAAAAAAA

LD44361.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-RB 1592 BEAF-32-RB 43..1580 1..1538 7690 100 Plus
BEAF-32.b 1331 BEAF-32.b 165..1320 383..1538 5780 100 Plus
BEAF-32.a 1561 BEAF-32.a 396..1550 384..1538 5775 100 Plus
BEAF-32.b 1331 BEAF-32.b 40..166 1..127 635 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10659092..10659926 704..1538 4175 100 Plus
chr2R 21145070 chr2R 10658236..10658936 1..705 3280 98 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14771798..14772632 704..1538 4175 100 Plus
2R 25286936 2R 14770938..14771642 1..705 3525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14772997..14773831 704..1538 4175 100 Plus
2R 25260384 2R 14772137..14772841 1..705 3525 100 Plus
Blast to na_te.dros performed 2019-03-16 11:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 6853..6960 1411..1522 117 61.1 Plus

LD44361.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:23:04 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10658236..10658936 1..705 98 -> Plus
chr2R 10659094..10659926 706..1539 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:27 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 1..849 465..1313 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:13 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 1..849 465..1313 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:38 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 1..849 465..1313 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:35 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 1..849 465..1313 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:41 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 1..849 465..1313 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:16 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 1..1538 1..1539 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:12 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 1..1536 1..1536 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:38 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RC 23..1558 1..1536 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:35 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RB 1..1538 1..1539 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:41 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RC 23..1558 1..1536 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:23:04 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14770938..14771642 1..705 100 -> Plus
2R 14771800..14772632 706..1539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:23:04 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14770938..14771642 1..705 100 -> Plus
2R 14771800..14772632 706..1539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:23:04 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14770938..14771642 1..705 100 -> Plus
2R 14771800..14772632 706..1539 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:38 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10658443..10659147 1..705 100 -> Plus
arm_2R 10659305..10660137 706..1539 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:55 Download gff for LD44361.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14772137..14772841 1..705 100 -> Plus
2R 14772999..14773831 706..1539 99   Plus

LD44361.hyp Sequence

Translation from 464 to 1312

> LD44361.hyp
MPKGRVSNVWQHYDINEECENFAICRYCGNNISRGGMASNLKGNNTTNLW
THLRHKHRDEVLVSPVQQRPQARMIPIIKKDKTVRITKAKTLREPLRVAK
PKIESNVANYLGEAGALPQKWEEYEQNDEISEDIKDIIYSEDPLCYSPIH
VMDDEGLDQPEKQVTVLTHSTSPAGGSSRPIGVGSGVQATVVASTSSSSS
SAKQLKNNLETSIERLTAVSEQLSYIIQQNHEELTKDDDYYFALSLVPAM
RHLSLSRKMYVRSKIQDILFKESEDSTLAKDE*

LD44361.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-PC 282 CG10159-PC 1..282 1..282 1457 100 Plus
BEAF-32-PB 282 CG10159-PB 1..282 1..282 1457 100 Plus
BEAF-32-PA 283 CG10159-PA 25..283 2..282 1034 76.2 Plus

LD44361.pep Sequence

Translation from 464 to 1312

> LD44361.pep
MPKGRVSNVWQHYDINEECENFAICRYCGNNISRGGMASNLKGNNTTNLW
THLRHKHRDEVLVSPVQQRPQARMIPIIKKDKTVRITKAKTLREPLRVAK
PKIESNVANYLGEAGALPQKWEEYEQNDEISEDIKDIIYSEDPLCYSPIH
VMDDEGLDQPEKQVTVLTHSTSPAGGSSRPIGVGSGVQATVVASTSSSSS
SAKQLKNNLETSIERLTAVSEQLSYIIQQNHEELTKDDDYYFALSLVPAM
RHLSLSRKMYVRSKIQDILFKESEDSTLAKDE*

LD44361.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13135-PA 355 GF13135-PA 82..355 4..282 1080 75.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20480-PA 283 GG20480-PA 25..283 2..282 956 71.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21415-PA 266 GH21415-PA 1..262 1..277 965 68.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-PC 282 CG10159-PC 1..282 1..282 1457 100 Plus
BEAF-32-PB 282 CG10159-PB 1..282 1..282 1457 100 Plus
BEAF-32-PA 283 CG10159-PA 25..283 2..282 1034 76.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18590-PA 265 GI18590-PA 1..260 1..276 949 68.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11437-PA 278 GL11437-PA 25..278 2..282 721 53.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10120-PA 278 GA10120-PA 25..278 2..282 714 53.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21570-PA 283 GM21570-PA 25..283 2..282 976 75.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15413-PA 246 GD15413-PA 1..246 37..282 1279 98.4 Plus
Dsim\GD11076-PA 283 GD11076-PA 25..283 2..282 978 75.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20389-PA 341 GJ20389-PA 80..336 4..276 949 69.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22912-PA 278 GK22912-PA 1..278 1..282 894 66 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13610-PA 284 GE13610-PA 25..284 2..282 953 71.5 Plus