Clone LD44383 Report

Search the DGRC for LD44383

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:443
Well:83
Vector:pOT2
Associated Gene/TranscriptCG17665-RB
Protein status:LD44383.pep: wuzgold
Sequenced Size:2782

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17665 2004-10-02 Blastp of sequenced clone
CG17665 2008-04-29 Release 5.5 accounting
CG17665 2008-08-15 Release 5.9 accounting
CG17665 2008-12-18 5.12 accounting

Clone Sequence Records

LD44383.complete Sequence

2782 bp (2782 high quality bases) assembled on 2004-10-02

GenBank Submission: BT016083

> LD44383.complete
CTTATTAAAGTCATACATTGTGCGAGCACATTAACCGCGGAAAAATTTGA
CGAAATTACGCCTTTAGATGGAACAGCAGCAATCAAAAAATAATGCTCAC
GTCTCAAAGTTGTTCATTTGTACGGCTGTTGATTGCAAAGATGATATTGA
GGAGCCTCCTACAAAACGTAGCTCGAATTCCTGAGTTTGAACAACTGTGG
CGGGATATTCTTTTCAATCCTAAAATGTTGCATCAAACTTTTAACGGAAT
TTGGCAACTACTGCATATACGGACAAGTCGAAGGTTTCTGCAATGCCGTC
TGCTGCCTGAGATGGAACGAAAAATAAGCTTCTTAGCATCTTCTGTTAAG
TTTGGAAATCAGAAGAGATACCAAGATTGGTTTCAGGACAAATACTTTGC
TACACCTGAGTCTCATAGCTTGCGATCTGATCTAATTCGATTTATCATAA
ATGTCATCCATCCCACAAACGATATGTTGTGCTCTGATATTATACCGCGA
TGGGCAATCATAGGTTGGCTCATCTCGTCCTGCACCAATCCAATCGCTTC
TGCTAATGCAAAGTTGTCATTGTTTTATGATTGGTTATTTTTTGATCCTG
CCAAGGATAATATAATGAATATAGAGCCTGGAATTTTAGTTATGTACCAC
TCTATAAGAAATCATCCATTTGTTAGTAGCACGCTGTTGGATTTCTTATG
CCGTATTACAAAAAACTTTTTCGTAAAACATGAAGATAAAATTCGCATTG
GTGTTTATAATTCATTGAAATTAATTCTTGAAAAGCAGGTGATACCAAAT
CTGCAACCACTTTTTGAGTCACCCAAACTTGACAGAGAACTGCGTAATTT
AATAAGGGACAATTTTAGAGAGTTTTTATCACCGCCGGCTAATCACGGAC
AGCTACTGTTCACTTCCCTGCATCCAGTTCAGGGTCATATTTTAAAAAAA
GAGAGCGATCAAAGAATTTTACATTGTGAAAACATGGACCTTCATGAAAC
TGGGCTCATAAATATTAGTGGGACAATCGATGAAGACAAAAAGATCTTAC
TCGTGCCAACGGATCAAGAAATTGAAAGTGTTTTTAGCGACGAAACTGCT
GAAAATTTAAGAAGAGTTCACAACATTGAGGACAATACGGATGACGACGA
TGACCTACCATTATCAGAGGTAAGACTTAAAGAAAAGCCAAAGGTAGAAC
TAGCAGAAGCAATAGCCGAATCTTTTGATGCATTTGTTACGAAGCGTAAC
TCATACACTTGGGAGGCGTTTTTGAAAGATTTCCGGCCATTACCAGCGTC
TGCGTTTGAAGAGTTTCAGCTGAACTATGTGATATCAAATACTGTTTTAA
TTTTACGGGAGACTTTGCCTCAACAAAATATATTTTCCGAGAGCAAAACC
GAAGAAAAACATTTGGCAAAAAGTATAAGTTATCCTTTGTACGGTTTGTT
TCGATTTTTATATGAAAACGACGAAAAAAGCAAAAAACCATTTCAAACCT
TGCTGTCAGAAATCTGTGAAGGAATACCTGAAATTGGCTATTTGCTTCTG
TACTTTATGAAAATTTATTGTAAGCTTCAAACGCGCAAAAACTCCCAACA
ATCATATCAGTTTAAAACAACTATTTATCGACAAATTTGCGATGCGGCAG
ATGAGAAAATCGGCAATTGTCTGTTACGGGATCTTGATCTGCTAGAAAAG
GAAAACACAAATATTTTTTTATGGCTCCTGCCTGATATATATAGAGAGTT
TAAGTCAATAGCAACAAATAACACTGATCTTTTGCGAATAACACTGCGTT
GCATAGATGCAAAAAATGTGCGTGACATATTATACTCAATCGCACAAGGA
AAACTTACAATATTTAAACAAGATGGTCTCATTGATTGCATAAGGCAAAG
TCTCGAGTTTGAGACATACGAACAGTTTTGCCTTTGGCAAATTGTTCAAG
CTCACGATGTACCCTTAAGGTGTATACAGGACATATTGCCAGAACTGGAA
GCCGGAAGTCATCCCGAAGCTTTAAGCCATTTTCTGTTATTGCTTAAAAA
TGAAGAACCCACAAATGAAATTATTCGATTAATGCTTAGCAGAGAATCGA
AGTCGAAAGGTGATCCATTCGTAACCTCAGCCTTAAGATTCTGGTGTCAA
CGCTATGAAGAAAAACTGTCTGAAATCATTGCTTCCCTGCTTACATCAAA
ATACCCCAGTTCATCTCCCAACAAAAGAAAACGACCCCCCAAGGGGATTT
CTGTCTCGACTAGCACTCCTTCTGCTGATCAAGTATTAAATCATCTGGAG
CATTATAGAAGAAGTTGCAGACATGGCACTGGAACTGGCCTTTACGTTCA
TGATATGATGCAGAGAGCACTTCAATCGGCTTACTCTCACAGTAATGATA
GTACTAAGAAACAATTTTGTGATTTGTTCGCCCTGGCAGCGGAAGAAGAT
ACCACAGTTGGCCGACGTGGGGGAAGCGGACGTGGACGTAAACAACCAGG
GAGTAAGAAAGATGTCAATAATCATGGGACAAGTAAAAAAAATCCCGAGA
TGGTTAAAACAATATATTCCTCCGATGACAATTCTAGCGAGGAGGATTGG
TCAAAATCTAAAATATTGCAAACGGCTAAGAGAAGGAAAAAAGCTAACAA
TGATTCTGACTGACAATGGGAATGTCATTCCCTAATTAGTTACTTCTCTG
ATAAAGAATTAAAAGCGGATTTCGAGATTTCTCAATAAAAATTATGAATT
GAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD44383.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17665-RB 2816 CG17665-RB 43..2799 1..2757 13785 100 Plus
CG17665.a 3083 CG17665.a 480..3083 151..2754 13020 100 Plus
CG17665-RA 3596 CG17665-RA 857..3460 154..2757 13020 100 Plus
CG17665.a 3083 CG17665.a 66..219 1..154 770 100 Plus
CG17665-RA 3596 CG17665-RA 93..246 1..154 770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 124456..125275 1980..1161 4070 99.8 Minus
chr2R 21145070 chr2R 126059..126701 795..153 3200 99.8 Minus
chr2R 21145070 chr2R 125560..125753 1171..978 970 100 Minus
chr2R 21145070 chr2R 125816..126008 978..786 965 100 Minus
chr2R 21145070 chr2R 123540..123725 2592..2407 930 100 Minus
chr2R 21145070 chr2R 123321..123486 2755..2590 830 100 Minus
chr2R 21145070 chr2R 124242..124401 2137..1978 800 100 Minus
chr2R 21145070 chr2R 130302..130455 154..1 755 99.4 Minus
chr2R 21145070 chr2R 123956..124102 2285..2136 670 98 Minus
chr2R 21145070 chr2R 123783..123908 2408..2283 630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4236913..4237732 1980..1161 4070 99.8 Minus
2R 25286936 2R 4238516..4239158 795..153 3200 99.8 Minus
2R 25286936 2R 4238017..4238210 1171..978 970 100 Minus
2R 25286936 2R 4238273..4238465 978..786 965 100 Minus
2R 25286936 2R 4235994..4236179 2592..2407 930 100 Minus
2R 25286936 2R 4235773..4235940 2757..2590 840 100 Minus
2R 25286936 2R 4236699..4236858 2137..1978 800 100 Minus
2R 25286936 2R 4242761..4242914 154..1 770 100 Minus
2R 25286936 2R 4236410..4236559 2285..2136 750 100 Minus
2R 25286936 2R 4236237..4236362 2408..2283 630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 4238112..4238931 1980..1161 4070 99.7 Minus
2R 25260384 2R 4239715..4240357 795..153 3200 99.8 Minus
2R 25260384 2R 4239216..4239409 1171..978 970 100 Minus
2R 25260384 2R 4239472..4239664 978..786 965 100 Minus
2R 25260384 2R 4237193..4237378 2592..2407 930 100 Minus
2R 25260384 2R 4236972..4237139 2757..2590 840 100 Minus
2R 25260384 2R 4237898..4238057 2137..1978 800 100 Minus
2R 25260384 2R 4243960..4244113 154..1 770 100 Minus
2R 25260384 2R 4237609..4237758 2285..2136 750 100 Minus
2R 25260384 2R 4237436..4237561 2408..2283 630 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:56:12 has no hits.

LD44383.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:57:14 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 123321..123484 2592..2755 100 <- Minus
chr2R 123541..123723 2409..2591 100 <- Minus
chr2R 123783..123908 2283..2408 100 <- Minus
chr2R 123959..124100 2138..2282 97 <- Minus
chr2R 124242..124399 1980..2137 100 <- Minus
chr2R 124457..125266 1170..1979 100 <- Minus
chr2R 125562..125752 979..1169 100 <- Minus
chr2R 125816..126005 789..978 100 <- Minus
chr2R 126066..126699 155..788 100 <- Minus
chr2R 130302..130455 1..154 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:31 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
CG17665-RB 1..2571 93..2663 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:48 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
CG17665-RB 1..2571 93..2663 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:13:56 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
IntS3-RA 1..89 68..153 96 <- Plus
IntS3-RA 698..3207 154..2663 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:38 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
CG17665-RB 1..2571 93..2663 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:11:55 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
IntS3-RA 1..89 68..153 96 <- Plus
IntS3-RA 698..3207 154..2663 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:36:43 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
CG17665-RB 26..2776 1..2751 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:47 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
CG17665-RB 26..2776 1..2751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:56 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
IntS3-RA 21..176 1..153 98 <- Plus
IntS3-RA 785..3382 154..2751 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:38 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
CG17665-RB 26..2776 1..2751 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:11:55 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
IntS3-RA 21..176 1..153 98 <- Plus
IntS3-RA 785..3382 154..2751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:14 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4235775..4235938 2592..2755 100 <- Minus
2R 4235995..4236177 2409..2591 100 <- Minus
2R 4236237..4236362 2283..2408 100 <- Minus
2R 4236413..4236557 2138..2282 100 <- Minus
2R 4236699..4236856 1980..2137 100 <- Minus
2R 4236914..4237723 1170..1979 100 <- Minus
2R 4238019..4238209 979..1169 100 <- Minus
2R 4238273..4238462 789..978 100 <- Minus
2R 4238523..4239156 155..788 100 <- Minus
2R 4242761..4242914 1..154 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:14 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4235775..4235938 2592..2755 100 <- Minus
2R 4235995..4236177 2409..2591 100 <- Minus
2R 4236237..4236362 2283..2408 100 <- Minus
2R 4236413..4236557 2138..2282 100 <- Minus
2R 4236699..4236856 1980..2137 100 <- Minus
2R 4236914..4237723 1170..1979 100 <- Minus
2R 4238019..4238209 979..1169 100 <- Minus
2R 4238273..4238462 789..978 100 <- Minus
2R 4238523..4239156 155..788 100 <- Minus
2R 4242761..4242914 1..154 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:14 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4235775..4235938 2592..2755 100 <- Minus
2R 4235995..4236177 2409..2591 100 <- Minus
2R 4236237..4236362 2283..2408 100 <- Minus
2R 4236413..4236557 2138..2282 100 <- Minus
2R 4236699..4236856 1980..2137 100 <- Minus
2R 4236914..4237723 1170..1979 100 <- Minus
2R 4238019..4238209 979..1169 100 <- Minus
2R 4238273..4238462 789..978 100 <- Minus
2R 4238523..4239156 155..788 100 <- Minus
2R 4242761..4242914 1..154 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:56 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 123280..123443 2592..2755 100 <- Minus
arm_2R 123500..123682 2409..2591 100 <- Minus
arm_2R 123742..123867 2283..2408 100 <- Minus
arm_2R 123918..124062 2138..2282 100 <- Minus
arm_2R 124204..124361 1980..2137 100 <- Minus
arm_2R 124419..125228 1170..1979 100 <- Minus
arm_2R 125524..125714 979..1169 100 <- Minus
arm_2R 125778..125967 789..978 100 <- Minus
arm_2R 126028..126661 155..788 100 <- Minus
arm_2R 130266..130419 1..154 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:52:34 Download gff for LD44383.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4238113..4238922 1170..1979 100 <- Minus
2R 4239218..4239408 979..1169 100 <- Minus
2R 4239472..4239661 789..978 100 <- Minus
2R 4239722..4240355 155..788 100 <- Minus
2R 4243960..4244113 1..154 100   Minus
2R 4237194..4237376 2409..2591 100 <- Minus
2R 4236974..4237137 2592..2755 100 <- Minus
2R 4237436..4237561 2283..2408 100 <- Minus
2R 4237612..4237756 2138..2282 100 <- Minus
2R 4237898..4238055 1980..2137 100 <- Minus

LD44383.hyp Sequence

Translation from 92 to 2662

> LD44383.hyp
MLTSQSCSFVRLLIAKMILRSLLQNVARIPEFEQLWRDILFNPKMLHQTF
NGIWQLLHIRTSRRFLQCRLLPEMERKISFLASSVKFGNQKRYQDWFQDK
YFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWLISSCTNP
IASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLD
FLCRITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFESPKLDREL
RNLIRDNFREFLSPPANHGQLLFTSLHPVQGHILKKESDQRILHCENMDL
HETGLINISGTIDEDKKILLVPTDQEIESVFSDETAENLRRVHNIEDNTD
DDDDLPLSEVRLKEKPKVELAEAIAESFDAFVTKRNSYTWEAFLKDFRPL
PASAFEEFQLNYVISNTVLILRETLPQQNIFSESKTEEKHLAKSISYPLY
GLFRFLYENDEKSKKPFQTLLSEICEGIPEIGYLLLYFMKIYCKLQTRKN
SQQSYQFKTTIYRQICDAADEKIGNCLLRDLDLLEKENTNIFLWLLPDIY
REFKSIATNNTDLLRITLRCIDAKNVRDILYSIAQGKLTIFKQDGLIDCI
RQSLEFETYEQFCLWQIVQAHDVPLRCIQDILPELEAGSHPEALSHFLLL
LKNEEPTNEIIRLMLSRESKSKGDPFVTSALRFWCQRYEEKLSEIIASLL
TSKYPSSSPNKRKRPPKGISVSTSTPSADQVLNHLEHYRRSCRHGTGTGL
YVHDMMQRALQSAYSHSNDSTKKQFCDLFALAAEEDTTVGRRGGSGRGRK
QPGSKKDVNNHGTSKKNPEMVKTIYSSDDNSSEEDWSKSKILQTAKRRKK
ANNDSD*

LD44383.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
IntS3-PA 1068 CG17665-PA 234..1068 22..856 4370 100 Plus

LD44383.pep Sequence

Translation from 92 to 2662

> LD44383.pep
MLTSQSCSFVRLLIAKMILRSLLQNVARIPEFEQLWRDILFNPKMLHQTF
NGIWQLLHIRTSRRFLQCRLLPEMERKISFLASSVKFGNQKRYQDWFQDK
YFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWLISSCTNP
IASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLD
FLCRITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFESPKLDREL
RNLIRDNFREFLSPPANHGQLLFTSLHPVQGHILKKESDQRILHCENMDL
HETGLINISGTIDEDKKILLVPTDQEIESVFSDETAENLRRVHNIEDNTD
DDDDLPLSEVRLKEKPKVELAEAIAESFDAFVTKRNSYTWEAFLKDFRPL
PASAFEEFQLNYVISNTVLILRETLPQQNIFSESKTEEKHLAKSISYPLY
GLFRFLYENDEKSKKPFQTLLSEICEGIPEIGYLLLYFMKIYCKLQTRKN
SQQSYQFKTTIYRQICDAADEKIGNCLLRDLDLLEKENTNIFLWLLPDIY
REFKSIATNNTDLLRITLRCIDAKNVRDILYSIAQGKLTIFKQDGLIDCI
RQSLEFETYEQFCLWQIVQAHDVPLRCIQDILPELEAGSHPEALSHFLLL
LKNEEPTNEIIRLMLSRESKSKGDPFVTSALRFWCQRYEEKLSEIIASLL
TSKYPSSSPNKRKRPPKGISVSTSTPSADQVLNHLEHYRRSCRHGTGTGL
YVHDMMQRALQSAYSHSNDSTKKQFCDLFALAAEEDTTVGRRGGSGRGRK
QPGSKKDVNNHGTSKKNPEMVKTIYSSDDNSSEEDWSKSKILQTAKRRKK
ANNDSD*

LD44383.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23122-PA 1072 GG23122-PA 234..1072 22..856 4189 95.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13349-PA 1083 GH13349-PA 239..1083 22..856 3539 82.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
IntS3-PA 1068 CG17665-PA 234..1068 22..856 4370 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18256-PA 1079 GI18256-PA 234..1079 22..856 3506 82.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21164-PA 1064 GL21164-PA 232..992 22..778 3427 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26749-PA 1068 GM26749-PA 234..1068 22..856 4428 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17515-PA 1079 GJ17515-PA 234..1079 22..856 3580 82.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23434-PA 1086 GK23434-PA 236..1086 22..856 3450 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11342-PA 1072 GE11342-PA 234..1072 22..856 4233 95 Plus