Clone LD44495 Report

Search the DGRC for LD44495

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:444
Well:95
Vector:pOT2
Associated Gene/Transcriptspt4-RA
Protein status:LD44495.pep: gold
Preliminary Size:2580
Sequenced Size:2316

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12372 2001-01-01 Release 2 assignment
CG12372 2001-11-29 Blastp of sequenced clone
spt4 2008-04-29 Release 5.5 accounting
spt4 2008-08-15 Release 5.9 accounting
spt4 2008-12-18 5.12 accounting

Clone Sequence Records

LD44495.complete Sequence

2316 bp (2316 high quality bases) assembled on 2001-11-29

GenBank Submission: AY075424

> LD44495.complete
TGGCTTGGTTTTGCACGGATTTTGTATTTTTAGTTTTAAACCCATAATTG
ATAAGTAAATATGGCCTTTGACGCGATACCCAAGGATCTGCGAGGACTTC
GCGCCTGCCTCGTTTGCTCCCTAGTGAAGAGTTTTGATCAATTTGAGACT
GATGGCTGTGAAAACTGCGAGGAGTTCCTGCGAATGAAAAACAACAAGGA
CAATGTCTATGATCACACTAGCAACAACTTTGACGGAATTATTGCCCTAA
CTACGCCCACCGACTCCTGGGTGGCCAAGTGGCAAAGATTGTCCCGCTTT
ACTCGTGGTATCTATGCCATTTCTGTATCCGGAACACTGCCGCAGTCTAC
CTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGGACAGAA
GTCAACGATAAACAAACAGATTGCCGTACAAAATACATGTATAAATCTTT
ATTCTTTAATTTATAACAAAACCACGAATACATACAATAGCAATACAAAA
CGAAACCGCATCAGTCATCCAGCGAACTAACGCGCAATCCCTCGCCGCCG
GCAGTCGTAACATGAACACCAAAACCCGCCGATTCGAGCTCCTCTTTAAG
CTTCCAGTAGACCTCGTTGCACTCGTAGTTCTCTGGAAGCAGAACGATGA
CATAGCCACCTGCGCCGGCGCCCGTCAGCTTTGAAAAGAAGCCACGCTTA
AAAGCGATGGTGAAGATTTGCTCCAGTTTCGGGTGCGACACTCCGATAGC
CTTCAACAGATCATTGTTGATCTGGAACAGGCGTTCAAGTTGCTCGAATT
TCGAGCTATCGTCTTGGGCGTTGCCAAAGCTTTCGTAGAGTGGAACGGCG
GCGGCAACAAGCTCCTCGCAAGCCTGCCAAATGGCCTCGATGAGCTGCGG
AAAGGCATCTCCCAGATGACGAACCTTGGCCACAATGTCGGCGGTGCTGC
GACTCACACGACTGTCCACCAGCAGGATGTTTAGTGGTTTCTGGATCTTC
AGCGACTGGAAGCCCTGGCCCTTGACATACCGCAACATTCCGCCGTAGGT
GCATACAGTGTTGTCCAGACCCGAGGGCGTGCCATGATTAACACGCTCCG
ATTCATAAGCCCAGGACGAGATCAACGCCTGGTTTGCCTCCGACAAGTAG
CTGTCTCTATCAAAGTGTCCGGCCAAAATGAGAAATGTCGTGGCCAAAGC
TGCTCCGAAAGAGGCGGAACTGCCCAAACCCGCACCCACGGTTAGCTGGC
TGTCTACCTGCACCTGGAAACCGGTTTGCAGCGTCAGTTTCTTGTCGCCG
GGTGCGGAGAGTACAGCGCCGGCCAGCAAATAGTATATGGAGATGAATGC
CCGCTGGGTGTGCTGCTTCGGTGCATTGCCTCCGGATCGTTCAAGTTGTT
TGGACACCTCTGCGCGGACGGCTTCCAACAGATTGGCCGTGCTATCTGAT
GGGTATTTACTCCTAAATTCAGCCAAAAATCCATTGAACTCCGGCAACTG
GATCTCCAGTGTGCAGTTAAGGGCCTCCAGTTGAAAACTTGCCACCTGGC
TGTCCTCCAGCTGCCGAAATCTCAGAGTAGTGCCCAAACCCACTACGGCG
GCGAGGGCGGGACGATGATAGACCACGGCGTGTTCGCCATGGAGTATGAC
CTTGCCCGGAGAATGGACCTGGAACTTGAGCATTGTTCTTGATGATCTCC
GTGTATTGTGTGTTCTGTATTCCGTTTGGCTATGGCTTTATCGGTTTATC
AGCTGTTTCGAATTGTAATGCTAATGCCTTTCGAGTGGACGACCTGCGAC
AAGTAGTTAAACTTTTATGGCTGTATTTCTTTATGTAACTTATGCATTTA
GTGGATCATTTGCGTTGTTTATTCGGTAACTCCTATTTCTGGCTGCCGAT
TCCTGTGCTTTCCCTTTCACTTTCTTTGTGCGACTGGCGTTTTTCGGCTT
GTTCGTCTCTTCGATCGGAAAGCGCAACCATCAGCAAAACGAACAACAGG
TTTTTGCGGCTAGTGTTTGCTGTTGTTGTATCGCTCGTGTATATGTATGT
GTGTTGTTGGTTTTTTTTTATTCGGTACTACTATTGGGCTTTCACTTTCT
CCCACTCTTCGGGTGTGTAGGATTTCTGGGAGAATGCATGGATTTCTTTC
AGTTCTTCGGCAAGCGTTGAGTTAACTAATCTATGCTTCTGGAGAAGGGT
CTTGCCGCTGAAGGCTGGCGATACGATTACGGCGCTGAACTTGCCGCCAC
AGCCGTCTGATTCGTCCGTAACACTCACGTACTCCGTCTGAATTAAAAAA
AAAAAAAAAAAAAAAA

LD44495.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-RA 2430 spt4-RA 133..2422 1..2290 11450 100 Plus
CG33672-RA 1999 CG33672-RA 129..1999 2290..420 9355 100 Minus
CG33671-RA 1999 CG33671-RA 129..1999 2290..420 9355 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8521294..8523289 293..2290 9895 99.8 Plus
chr2R 21145070 chr2R 8521063..8521227 128..292 825 100 Plus
chr2R 21145070 chr2R 8520875..8521003 1..129 645 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12634036..12636033 293..2290 9990 100 Plus
2R 25286936 2R 12633805..12633969 128..292 825 100 Plus
2R 25286936 2R 12633617..12633745 1..129 645 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12635235..12637232 293..2290 9990 100 Plus
2R 25260384 2R 12635004..12635168 128..292 825 100 Plus
2R 25260384 2R 12634816..12634944 1..129 645 100 Plus
Blast to na_te.dros performed 2019-03-16 04:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1412..1481 2078..2011 119 67.1 Minus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 490..572 378..463 116 62.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 491..573 378..463 116 62.8 Plus

LD44495.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:31:44 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8520875..8521003 1..129 100 -> Plus
chr2R 8521065..8521227 130..292 100 -> Plus
chr2R 8521294..8523293 293..2294 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:36 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 1..351 61..411 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:58 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 1..351 61..411 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:31:41 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 1..351 61..411 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:41:30 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 1..351 61..411 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:29 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 1..2294 1..2294 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:58 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 1..2294 1..2294 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:41 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
CG33672-RA 104..1976 423..2294 99   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:21 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 1..2294 1..2294 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:41:30 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 104..1976 423..2294 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:44 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12633807..12633969 130..292 100 -> Plus
2R 12634036..12636037 293..2294 99   Plus
2R 12633617..12633745 1..129 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:44 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12633807..12633969 130..292 100 -> Plus
2R 12634036..12636037 293..2294 99   Plus
2R 12633617..12633745 1..129 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:44 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12633807..12633969 130..292 100 -> Plus
2R 12634036..12636037 293..2294 99   Plus
2R 12633617..12633745 1..129 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:41 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8521122..8521250 1..129 100 -> Plus
arm_2R 8521312..8521474 130..292 100 -> Plus
arm_2R 8521541..8523542 293..2294 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:49 Download gff for LD44495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12635235..12637236 293..2294 99   Plus
2R 12634816..12634944 1..129 100 -> Plus
2R 12635006..12635168 130..292 100 -> Plus

LD44495.pep Sequence

Translation from 60 to 410

> LD44495.pep
MAFDAIPKDLRGLRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVY
DHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQSTLRD
MKNRGIVYKSRDRSQR*

LD44495.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13399-PA 116 GF13399-PA 1..116 1..116 597 94 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20325-PA 116 GG20325-PA 1..116 1..116 610 98.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21192-PA 116 GH21192-PA 1..116 1..116 598 94 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-PA 116 CG12372-PA 1..116 1..116 615 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20479-PA 116 GI20479-PA 1..116 1..116 604 94.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10908-PA 116 GL10908-PA 1..116 1..116 607 96.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11588-PA 116 GA11588-PA 1..116 1..116 607 96.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21413-PA 116 GM21413-PA 1..116 1..116 619 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10908-PA 116 GD10908-PA 1..116 1..116 619 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22329-PA 116 GJ22329-PA 1..116 1..116 603 95.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20849-PA 116 GK20849-PA 1..116 1..116 612 96.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12484-PA 116 GE12484-PA 1..116 1..116 620 99.1 Plus

LD44495.hyp Sequence

Translation from 60 to 410

> LD44495.hyp
MAFDAIPKDLRGLRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVY
DHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQSTLRD
MKNRGIVYKSRDRSQR*

LD44495.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-PA 116 CG12372-PA 1..116 1..116 615 100 Plus