Clone LD44720 Report

Search the DGRC for LD44720

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:447
Well:20
Vector:pOT2
Associated Gene/TranscriptCG7530-RA
Protein status:LD44720.pep: gold
Preliminary Size:2651
Sequenced Size:2352

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7530 2001-01-01 Release 2 assignment
CG7530 2001-09-19 Blastp of sequenced clone
CG7530 2003-01-01 Sim4 clustering to Release 3
CG7530 2008-04-29 Release 5.5 accounting
CG7530 2008-08-15 Release 5.9 accounting
CG7530 2008-12-18 5.12 accounting

Clone Sequence Records

LD44720.complete Sequence

2352 bp (2352 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060432

> LD44720.complete
TTGCGAGAGGTGGAGGTGATCGCCAGAACTTTGCAGCTCAAAGTGAAATT
TCCAATCCCTGTTCCGTGTGTGGCCTAGTTAGAGCAAGTACATCAAAATC
AATTGAAGGTTATCTGGACCCTTGGGAATGTCAATACAACTGCATTCGTC
GAGACACGTGCTGCGAAAGCTGCCTGCGAAACAAGTGACCTGGAAAACTT
TTAGAAATTTTGGTTATGCAAACGGTTTTGTGAGAGAAATTCGTGTGGCT
GTGCTGTGCTGTAAAAGAAATAAACTCGAAACTGCAGTCGTGGAAACAAA
GCAAACTATATATTTTGTATTCATTATATGCATATATGTATTTCATGTGC
TCAACGCACCACCTTCATTGCAGAGCAATCTTATTTGAAAACTATTTTTA
TCTGAAAAATAAAACTTTTGATTTTCTTTTTCTTAAGAATACTATCGATA
AGGTCAATATATCTTATATAGTGTTAATTAAAAAGAACTCAATCACAAAA
ATATACTATTTTCAAGACCCTTGTAGAGCAGGCTTCTTCGGCCTCTAATC
GATTAAGCTCCGAAGAAAGTCCAAGTGAGAAAAGAGAGGCTACGCAGAGA
GCGAAGCTCGCTGTCTTTGTTGGCTCCAACATGGCAACATGGCTGCGCTC
CCCACTTGGCACCACTCAAGTTGTCTTTTGTTAGGCAGCTCGACTCGATT
TTCGCACTCTTCTGCGAAATGGTAGCGGTGACGGTGGGGGGGGGGGGGTT
GTTGATAACAGCCGGTCACCAACTGGCGATCGCAGCTTATGTATATGTTT
ACATTTTTACCCGGACACTCGATCTCTAAACGAGCTGTATTTCTGTGAAT
ACCCCCATCAGGCTACCGAGTGGCCATGAGTCCCCGTCCCCGTGAGATCC
TCGAGGAACCAGAACTGTCGCTGGACTCGTCCTCCTGCTACTTGCGAAAA
TCTGGACAGGATTGTGACGACAGCTGCCTGCTTGATGGCCAACTGGTTGC
GGATTCGGTGGACGCAGCGCATCAATTTCCGTCCAATGAGGAGCCCAATA
TTCTGGGGCATGGACCCAACTACGACGACAAGCTGTCCAAATTCAAATGG
CTGTGCAATTTCGATGATGCCCCCAGTCACCTGAAGTTCAACCCGTACAT
TCGTCGCGGATACCGCACCTTTCTACCTTCCACAAAAATGTGCCTGCAGA
GCATTTTCTGGTGGACCAATGAGACGATCAACATCTGGAGCCATCTGGCC
GGTTGCATCCTGTTCATTGGACTGACCATCTTCGATCTGCAGTTCCTGCG
CCTCCACGCCTCCCTGAGCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCT
GCTTCTGTCTGTGCATGCTGATGTCCGCCATATACCACATCTTCTCCTGC
AAATCGGAGGAGCACTACGAGCTCTTTCTGTCCGTTGACTTCCTGGGCAT
TTCGCTGTCGCTGGTGGCCATCTATATCAGTGGCATGTACTATGCCTTCT
GGTGCCACACCTTCCTGCGCACCCTGTACTCCACGATTGCACTGGGCATG
TTCGCACTGGCCATTGCCGTGCAGATACCCCGTTTGAATGTGTCCATGAA
CGGCAAGGTGGCGGTGCTGCTACTCTGGTCTGCCTATGGAATCATACCTC
TGGGCCACTGGGCGGTGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGG
CTGATGGTGCCCCGCATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTT
CGTTTTCTATGCGGCCAAGATTCCGGAGCGCTGGTTCACCGGCAAGGTGG
ACTTCGTTGGGCATTCGCACAACTGGTGGCACCTGATCATCGTGGCCGCC
TTCTATCACTGGCACAACACCGGACTGGTCTATGCCGAGTATCGCCTGAA
TAACGGATGCACTGCACCAGTTCTCTCCTAGAACTTGAAGATCCGAACAT
CTGAGTTAAGATCCGAAGATCCGAGGAGCGGAGATGGAATCCGGGACTCT
AGTAGACTAAAGCTTAGTGTAAATAGTTTATGGGGCGCTCTTTATCCGCT
AATAACTAATATTTAGTTGTAGTTGTTGACCGATATGATTAATTTATGTT
TAATTTACCAATTAGTTAGGGTTTCGTGTTAGACAATCCAGATCCAGATA
GTTGGCATCGCATAAGCGGCAAAAAGGTTTCTCTCTTTATATCCTAATTG
ATTTCCTTTAATATATACAATTAAACAATGTCAATGAAATTGCATGTGTC
TTGAGCTGAAGCTGTGTTAGTCTTGTTGACTCAATTTTTACAATTCATAA
AATGCAAATACAATATCAAACGTACAAAGCAAAAAAAAAAAAAAAAAAAA
AA

LD44720.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-RA 2423 CG7530-RA 81..2413 1..2332 11625 99.9 Plus
CG7530-RC 1714 CG7530-RC 234..1706 860..2332 7365 100 Plus
CG7530.b 1605 CG7530.b 125..1597 860..2332 7365 100 Plus
CG7530-RC 1714 CG7530-RC 1..236 218..453 1180 100 Plus
CG7530.b 1605 CG7530.b 19..127 1..109 545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10555256..10556232 980..1 4645 98.9 Minus
chr3R 27901430 chr3R 10549513..10550143 2330..1700 3110 99.5 Minus
chr3R 27901430 chr3R 10550210..10550684 1700..1226 2360 99.8 Minus
chr3R 27901430 chr3R 10551943..10552082 1119..980 700 100 Minus
chr3R 27901430 chr3R 10550793..10550900 1226..1119 540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14730511..14731491 980..1 4855 99.9 Minus
3R 32079331 3R 14724758..14725390 2332..1700 3165 100 Minus
3R 32079331 3R 14725457..14725931 1700..1226 2375 100 Minus
3R 32079331 3R 14727189..14727328 1119..980 700 100 Minus
3R 32079331 3R 14726040..14726147 1226..1119 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14471342..14472322 980..1 4865 99.8 Minus
3R 31820162 3R 14465589..14466221 2332..1700 3165 100 Minus
3R 31820162 3R 14466288..14466762 1700..1226 2375 100 Minus
3R 31820162 3R 14468020..14468159 1119..980 700 100 Minus
3R 31820162 3R 14466871..14466978 1226..1119 540 100 Minus
Blast to na_te.dros performed 2019-03-15 18:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1364..1541 478..308 126 57.5 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 5925..6023 468..367 114 62.1 Minus

LD44720.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:36:54 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10551944..10552081 981..1118 100 <- Minus
chr3R 10549513..10550142 1701..2330 99 <- Minus
chr3R 10550210..10550683 1227..1700 99 <- Minus
chr3R 10550793..10550900 1119..1226 100 <- Minus
chr3R 10555256..10556232 1..980 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:50 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RC 1..1056 876..1931 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:09 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RC 1..1056 876..1931 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:08:42 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 1..1056 876..1931 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:18 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RC 1..1056 876..1931 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:16 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 1..1056 876..1931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:35 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 19..2349 1..2330 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:08 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 19..2349 1..2330 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:08:42 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 19..2349 1..2330 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:18 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 19..2349 1..2330 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:16 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 19..2349 1..2330 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:54 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14724760..14725389 1701..2330 100 <- Minus
3R 14725457..14725930 1227..1700 100 <- Minus
3R 14726040..14726147 1119..1226 100 <- Minus
3R 14727190..14727327 981..1118 100 <- Minus
3R 14730511..14731491 1..980 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:54 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14724760..14725389 1701..2330 100 <- Minus
3R 14725457..14725930 1227..1700 100 <- Minus
3R 14726040..14726147 1119..1226 100 <- Minus
3R 14727190..14727327 981..1118 100 <- Minus
3R 14730511..14731491 1..980 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:54 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14724760..14725389 1701..2330 100 <- Minus
3R 14725457..14725930 1227..1700 100 <- Minus
3R 14726040..14726147 1119..1226 100 <- Minus
3R 14727190..14727327 981..1118 100 <- Minus
3R 14730511..14731491 1..980 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:08:42 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10550482..10551111 1701..2330 100 <- Minus
arm_3R 10551179..10551652 1227..1700 100 <- Minus
arm_3R 10551762..10551869 1119..1226 100 <- Minus
arm_3R 10552912..10553049 981..1118 100 <- Minus
arm_3R 10556233..10557213 1..980 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:24 Download gff for LD44720.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14466288..14466761 1227..1700 100 <- Minus
3R 14466871..14466978 1119..1226 100 <- Minus
3R 14468021..14468158 981..1118 100 <- Minus
3R 14465591..14466220 1701..2330 100 <- Minus
3R 14471342..14472322 1..980 99   Minus

LD44720.hyp Sequence

Translation from 875 to 1930

> LD44720.hyp
MSPRPREILEEPELSLDSSSCYLRKSGQDCDDSCLLDGQLVADSVDAAHQ
FPSNEEPNILGHGPNYDDKLSKFKWLCNFDDAPSHLKFNPYIRRGYRTFL
PSTKMCLQSIFWWTNETINIWSHLAGCILFIGLTIFDLQFLRLHASLSDQ
VLVVCLLVCFCLCMLMSAIYHIFSCKSEEHYELFLSVDFLGISLSLVAIY
ISGMYYAFWCHTFLRTLYSTIALGMFALAIAVQIPRLNVSMNGKVAVLLL
WSAYGIIPLGHWAVAMGGLENELVRLMVPRIVLMYLLCLVAFVFYAAKIP
ERWFTGKVDFVGHSHNWWHLIIVAAFYHWHNTGLVYAEYRLNNGCTAPVL
S*

LD44720.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-PC 351 CG7530-PC 1..351 1..351 1900 100 Plus
CG7530-PB 351 CG7530-PB 1..351 1..351 1900 100 Plus
CG7530-PA 351 CG7530-PA 1..351 1..351 1900 100 Plus
CG7530-PD 341 CG7530-PD 26..341 36..351 1713 100 Plus
AdipoR-PE 444 CG5315-PE 85..439 1..349 419 28.6 Plus

LD44720.pep Sequence

Translation from 875 to 1930

> LD44720.pep
MSPRPREILEEPELSLDSSSCYLRKSGQDCDDSCLLDGQLVADSVDAAHQ
FPSNEEPNILGHGPNYDDKLSKFKWLCNFDDAPSHLKFNPYIRRGYRTFL
PSTKMCLQSIFWWTNETINIWSHLAGCILFIGLTIFDLQFLRLHASLSDQ
VLVVCLLVCFCLCMLMSAIYHIFSCKSEEHYELFLSVDFLGISLSLVAIY
ISGMYYAFWCHTFLRTLYSTIALGMFALAIAVQIPRLNVSMNGKVAVLLL
WSAYGIIPLGHWAVAMGGLENELVRLMVPRIVLMYLLCLVAFVFYAAKIP
ERWFTGKVDFVGHSHNWWHLIIVAAFYHWHNTGLVYAEYRLNNGCTAPVL
S*

LD44720.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18132-PA 348 GF18132-PA 1..348 1..351 1684 89.5 Plus
Dana\GF16147-PA 503 GF16147-PA 222..498 76..349 392 31.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21110-PA 351 GG21110-PA 1..351 1..351 1844 98 Plus
Dere\GG12506-PA 483 GG12506-PA 126..478 1..349 397 27.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14088-PA 355 GH14088-PA 1..355 1..351 1566 83.1 Plus
Dgri\GH17396-PA 440 GH17396-PA 140..435 58..349 382 31.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-PC 351 CG7530-PC 1..351 1..351 1900 100 Plus
CG7530-PB 351 CG7530-PB 1..351 1..351 1900 100 Plus
CG7530-PA 351 CG7530-PA 1..351 1..351 1900 100 Plus
CG7530-PD 341 CG7530-PD 26..341 36..351 1713 100 Plus
AdipoR-PE 444 CG5315-PE 85..439 1..349 419 28.6 Plus
AdipoR-PD 444 CG5315-PD 85..439 1..349 419 28.6 Plus
AdipoR-PA 444 CG5315-PA 85..439 1..349 419 28.6 Plus
AdipoR-PC 444 CG5315-PC 85..439 1..349 419 28.6 Plus
AdipoR-PB 362 CG5315-PB 73..357 69..349 411 31.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10620-PA 362 GI10620-PA 1..362 1..351 1581 84.1 Plus
Dmoj\GI22724-PA 440 GI22724-PA 140..435 58..349 380 31.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23669-PA 357 GL23669-PA 1..357 1..351 1620 85.6 Plus
Dper\GL13682-PA 371 GL13682-PA 47..366 29..349 386 28.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18798-PA 484 GA18798-PA 160..479 29..349 387 28.9 Plus
Dpse\GA18798-PB 439 GA18798-PB 98..434 17..349 385 28.1 Plus
Dpse\GA30161-PB 521 GA30161-PB 245..507 76..347 198 27.2 Plus
Dpse\GA30161-PA 524 GA30161-PA 245..510 76..347 198 27.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25830-PA 351 GM25830-PA 1..351 1..351 1849 98 Plus
Dsec\GM23638-PA 484 GM23638-PA 123..479 1..349 396 27.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20404-PA 351 GD20404-PA 1..351 1..351 1854 98.6 Plus
Dsim\GD18448-PA 483 GD18448-PA 183..478 58..349 391 29.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22972-PA 356 GJ22972-PA 1..356 1..351 1604 85.8 Plus
Dvir\GJ24663-PA 429 GJ24663-PA 129..424 58..349 381 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11690-PA 359 GK11690-PA 1..359 1..351 1610 85.3 Plus
Dwil\GK14433-PA 438 GK14433-PA 97..433 17..349 379 28.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26431-PA 355 GE26431-PA 1..355 1..351 1829 96.6 Plus
Dyak\GE24027-PA 480 GE24027-PA 136..475 11..349 401 27.8 Plus