Clone LD44732 Report

Search the DGRC for LD44732

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:447
Well:32
Vector:pOT2
Associated Gene/TranscriptCG11586-RA
Protein status:LD44732.pep: gold
Preliminary Size:1364
Sequenced Size:1112

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11586 2001-01-01 Release 2 assignment
CG11586 2003-01-01 Sim4 clustering to Release 3
CG11586 2003-02-27 Blastp of sequenced clone
CG11586 2008-04-29 Release 5.5 accounting
CG11586 2008-08-15 Release 5.9 accounting
CG11586 2008-12-18 5.12 accounting

Clone Sequence Records

LD44732.complete Sequence

1112 bp (1112 high quality bases) assembled on 2003-02-27

GenBank Submission: AY061480

> LD44732.complete
ATCGCTAACAAAAATATTTACAAATTTTCATTGCCTTACTTTTACCGAAT
AGATTTTAGTGCAATTGTCATCCCAGCGCCACCATGACGATGCGACCTGA
TGACCACCGAAGGAAATGGGACAAGAACGAGTACGAGAAGCTGGCGGCGG
AGCGGCTGCTCAACCAGGTGGCACCCAAGGAAGAAGAACCCGTACAGCGG
GAGAACCTCAAGCGACGCGACTATAAGGTGGACCTGGACAGCAAGCTGGG
CAAGAGCGTTGTCATCAACAAGAACACACCCACCTCGCAATCCGGTGGCT
ATTACTGCAACGTTTGCGACTGCGTGGTCAAGGATTCCATCAACTTTCTG
GACCACATCAATGGCAAGAAGCACCAGCGCAATCTGGGCATGTCCATGAA
GGTGGAGCGGAGCACCGTCGACCAGGTAAAGGAGCGCTTCCAGCAGAACA
AGAAGAAGATGGAGGAGAAGCAGAAAGACTACGAGCTCGAGCGCCGCCTG
CGGGAGGCCAAGGAGGAGGAGGATCGCTACAAGGAACACCGCAAGGAGAA
GCGAAAAGAGCGGAAGCGCAAGGCCGAGGACACGGACTTCGAGTCCGGCG
GCATGCCCGACGACATGGCCGCCATCATGGGCTTCTCCGGCTTCGGTGGA
TCAAAGAAGAACTCGTAGGAACTAAGTGTTGAACTGCCCCTCCCCTCCAA
TTTTAGCTGTACCATGAAATAGAAACTAACCACAAGACGACGCGTCTAGT
TTAGCTTGTGACATTTATTTTGTATATAATTTCACACCAGTTCAGAAGAC
ACCAGCTACCCGGCTGTTCCCAGTTAGAATAATTTAATAAGCAGTCAGAA
GGCAAAAATTACTAAAAACCATTTTACTAAATCTAAGCATACGGCCGTGG
ATCACCTGCGGAATGAGCTTAGGTGAACACAAATCCCTGCTCAGTGGGTA
TGTCCCACGGCATGGTAAAGAACTCCCCGGGCAGCTGGGTGCAGTGCGTC
GAGTTATAGTCACGTAAATGCTTGCGCAGCTGAAAGGTGAACAGTATTAG
ATATATAGACCATTTAAACTGCCGAATAAACCCACCAAGAACACAAAAAA
AAAAAAAAAAAA

LD44732.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RA 1151 CG11586-RA 52..1146 1..1095 5475 100 Plus
CG1309-RA 1922 CG1309-RA 1634..1922 1030..742 1445 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4260683..4261592 1094..185 4550 100 Minus
chr3L 24539361 chr3L 4261650..4261835 186..1 930 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4261296..4262206 1095..185 4555 100 Minus
3L 28110227 3L 4262264..4262449 186..1 930 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4261296..4262206 1095..185 4555 100 Minus
3L 28103327 3L 4262264..4262449 186..1 930 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:42:49 has no hits.

LD44732.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:40 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4260683..4261590 187..1094 100 <- Minus
chr3L 4261650..4261835 1..186 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:51 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 1..585 84..668 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:47:12 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 1..585 84..668 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:19 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 1..585 84..668 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:39 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 1..585 84..668 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:38:40 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 1..585 84..668 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:59:04 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 13..1105 1..1093 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:47:12 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 13..1105 1..1093 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:19 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 22..1115 1..1094 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:39 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 13..1105 1..1093 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:38:40 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 22..1115 1..1094 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:40 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261297..4262204 187..1094 100 <- Minus
3L 4262264..4262449 1..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:40 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261297..4262204 187..1094 100 <- Minus
3L 4262264..4262449 1..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:40 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261297..4262204 187..1094 100 <- Minus
3L 4262264..4262449 1..186 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:19 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4261297..4262204 187..1094 100 <- Minus
arm_3L 4262264..4262449 1..186 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:56 Download gff for LD44732.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261297..4262204 187..1094 100 <- Minus
3L 4262264..4262449 1..186 100   Minus

LD44732.pep Sequence

Translation from 83 to 667

> LD44732.pep
MTMRPDDHRRKWDKNEYEKLAAERLLNQVAPKEEEPVQRENLKRRDYKVD
LDSKLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRN
LGMSMKVERSTVDQVKERFQQNKKKMEEKQKDYELERRLREAKEEEDRYK
EHRKEKRKERKRKAEDTDFESGGMPDDMAAIMGFSGFGGSKKNS*

LD44732.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24743-PA 195 GF24743-PA 1..195 1..194 996 97.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14201-PA 194 GG14201-PA 1..194 1..194 1023 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15537-PA 194 GH15537-PA 1..194 1..194 854 89.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-PB 194 CG11586-PB 1..194 1..194 1022 100 Plus
CG11586-PA 194 CG11586-PA 1..194 1..194 1022 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16814-PA 195 GI16814-PA 1..195 1..194 868 92.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12725-PA 195 GL12725-PA 1..195 1..194 903 95.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11083-PA 195 GA11083-PA 1..195 1..194 903 95.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13992-PA 194 GM13992-PA 1..194 1..194 1026 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13271-PA 194 GD13271-PA 1..194 1..194 1018 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12561-PA 194 GJ12561-PA 1..194 1..194 868 92.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10568-PA 195 GK10568-PA 1..195 1..194 863 91.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20629-PA 194 GE20629-PA 1..194 1..194 1021 99.5 Plus

LD44732.hyp Sequence

Translation from 83 to 667

> LD44732.hyp
MTMRPDDHRRKWDKNEYEKLAAERLLNQVAPKEEEPVQRENLKRRDYKVD
LDSKLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRN
LGMSMKVERSTVDQVKERFQQNKKKMEEKQKDYELERRLREAKEEEDRYK
EHRKEKRKERKRKAEDTDFESGGMPDDMAAIMGFSGFGGSKKNS*

LD44732.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-PB 194 CG11586-PB 1..194 1..194 1022 100 Plus
CG11586-PA 194 CG11586-PA 1..194 1..194 1022 100 Plus