LD44757.complete Sequence
1871 bp (1871 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061482
> LD44757.complete
AAATAACAAATATTTTCAAGCAAATCTGAATTATCAGAGAAAACCCCGTT
TTAAACAGAAATGGACAACAGCGTTATACTGATAGACGATTCACAAAACA
GCGTGGTGATTGTGGATGACGACGTGGAAGATGGGGAGCTGGAAGACGAT
GTGGTGTTCGTCTGTCCCGAAGAATTGACCAGAAAAGAGATCGAACCTCC
AACCGACAAAATTGAGGAAAAACACTCAAATACATCGATTCAGGACACCA
CCGAGGAAGATGGGGATAGCCTGGTCTTCGAAGTTCGATTTAACAAGGAA
GCGCACTTCACCAGTCTGCAGCAGCAAGTGCTCGTCGCCTTGGAAGGCGC
TTTTGCAGACAAGCAAATTGTGTTCCGGGACAACCCACAGGAACTAATGA
TATCAGCCTTCGAAAGAAGTAGGACCTTGCCAGAGGAGGAGCCCCAAGAC
CTCTTCCTGATCGACACTCAGCCAGCGGCCAAGCTGAATGCCGCAAACGT
TCCCTCCTACAAGCGCTGCAATGCCGACATCCTGGACGAGCAGACGGAAG
AACGGAAAAAACTGAAGGCAGAGGCGGTCAACAAGTGCTTTCGACCCAAG
GCGCAGTCGTCGTGCTTCAATTGCGGCGACACAGAGCACTCCCTACGCGA
CTGTACCAAGCCAAGAAACAATTCAAGGATAACGCGCGCTCGCAAAAAGA
TGACCAGCCGCACAGAGCGCTATCACGTCGATACAGAGCAGCGGTTCGGT
CACATACGCCCCGGCAAGATCAGCACTAAGACGCGCCATGCCATGGGCTA
CAGTCGCGGCCAGTTGCCCTTCATTTTCTACCGCATGCGAGTGCTGGGCT
ATCCGCCTGCTTGGCTGGAGGAGGCAAAGGTGCAGAGCTCGGGCATAGCT
CTGTTTAATGCAGATGGCTCGGAGGTTACAAAATCCGACGAGGAAGAGGG
AGAGTCCGAAACCTTTAAATACGACGTCAACAAAATAGTGGAGTATCCCG
GCTTCAACGTCCAGCCTAAGGCCAATTGTTTCGACGATTTTAAGCACCAC
AATGTACCGCCATTCCAAGAGAGCCAGTCCAAGGAGAACTTCATTAAATC
GTTGGGCGAAAACGTGATCAACGGTTACAAGCGCAAGAAGCTAGTGGATT
TGCCTGCTCCACACGACCGTGTTCCCGCTCCCAGCGAGTTGCTGACCAGC
TTCGATGACTACGACATGGAACTAGAAGAGGAAACAGAGGACCCTCCACT
GCCACCATCAGTGCCCCCGCCGCAACCACCTCCGCCCGAAGAGTGCGAAG
ATGGCGAACTGACAGCGCGCTCGCCATCTCCAAGCCTGGAAGATTTGAAG
GCCCAGCAGGAGGAGCTCCTCCAAGAGCTGGATGTTAATGCGTCGCATAA
CACGACAGCGAATGAATCGAAATCACCAACCGACCTGGATGACACGTCTG
AGACGGAGGTTGGTCCATCTGCTGCCGAGTCCGGAAATAATGAGCAGTCC
CGATCAGCACCCTCGACTCCCTTTAAGGCGTCTTATGAGGGCACGCCTTT
GCTGAAATTCTCCGTTTACGACAGACTGCCTGTGGGCAGCAACTTTAAGG
TGGGCGTCAGCGATGTGATCAACTTTGAAAACCTGCCCGACTCCACGGGA
AAGTACGAACAAATGAAGGATCTGCTAAAGAACGTACGCGAAAAGATGGT
GAAACTGCAGAACGAGAACTGACGAGACCAGGGAGACGGCAATACAAACC
ACATCAATTCCCGCCCACCATATGTACATTTTAAAGATTTTAAAGCCTCT
TGTACAAAGGAAATACACAAGGAAAGCGGTTAGTTTTCCAAAGTCTTTTA
AAAAAAAAAAAAAAAAAAAAA
LD44757.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-RA | 2063 | CG4622-RA | 166..2019 | 1..1854 | 9270 | 100 | Plus |
CG4622-RC | 2698 | CG4622-RC | 908..2698 | 59..1849 | 8955 | 100 | Plus |
CG13585-RA | 787 | CG13585-RA | 700..787 | 1854..1767 | 440 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 20419289..20420102 | 1849..1036 | 4070 | 100 | Minus |
chr2R | 21145070 | chr2R | 20420329..20421007 | 916..238 | 3380 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 20421056..20421299 | 244..1 | 1190 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 20420158..20420278 | 1036..916 | 605 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24533369..24534187 | 1854..1036 | 4095 | 100 | Minus |
2R | 25286936 | 2R | 24534414..24535092 | 916..238 | 3380 | 99.9 | Minus |
2R | 25286936 | 2R | 24535141..24535384 | 244..1 | 1220 | 100 | Minus |
2R | 25286936 | 2R | 24534243..24534363 | 1036..916 | 605 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 24534568..24535386 | 1854..1036 | 4095 | 100 | Minus |
2R | 25260384 | 2R | 24535613..24536291 | 916..238 | 3380 | 99.8 | Minus |
2R | 25260384 | 2R | 24536340..24536583 | 244..1 | 1220 | 100 | Minus |
2R | 25260384 | 2R | 24535442..24535562 | 1036..916 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 01:36:02 has no hits.
LD44757.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:36:49 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 20419289..20420102 | 1036..1849 | 100 | <- | Minus |
chr2R | 20420159..20420278 | 916..1035 | 100 | <- | Minus |
chr2R | 20420330..20421001 | 244..915 | 100 | <- | Minus |
chr2R | 20421057..20421299 | 1..243 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:53 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 1..1662 | 61..1722 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:28 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RC | 1..1662 | 61..1722 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:08:20 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 1..1662 | 61..1722 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:14 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 1..1662 | 61..1722 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:37:26 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 1..1662 | 61..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:47 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 39..1887 | 1..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:27 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 26..1874 | 1..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:08:20 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 44..1892 | 1..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:15 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 39..1887 | 1..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:37:26 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RA | 44..1892 | 1..1849 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:49 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24534244..24534363 | 916..1035 | 100 | <- | Minus |
2R | 24533374..24534187 | 1036..1849 | 100 | <- | Minus |
2R | 24534415..24535086 | 244..915 | 100 | <- | Minus |
2R | 24535142..24535384 | 1..243 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:49 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24534244..24534363 | 916..1035 | 100 | <- | Minus |
2R | 24533374..24534187 | 1036..1849 | 100 | <- | Minus |
2R | 24534415..24535086 | 244..915 | 100 | <- | Minus |
2R | 24535142..24535384 | 1..243 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:49 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24534244..24534363 | 916..1035 | 100 | <- | Minus |
2R | 24533374..24534187 | 1036..1849 | 100 | <- | Minus |
2R | 24534415..24535086 | 244..915 | 100 | <- | Minus |
2R | 24535142..24535384 | 1..243 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:08:20 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20420897..20421710 | 1036..1849 | 100 | <- | Minus |
arm_2R | 20421767..20421886 | 916..1035 | 100 | <- | Minus |
arm_2R | 20421938..20422609 | 244..915 | 100 | <- | Minus |
arm_2R | 20422665..20422907 | 1..243 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:28 Download gff for
LD44757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24536359..24536601 | 1..243 | 100 | | Minus |
2R | 24534591..24535404 | 1036..1849 | 100 | <- | Minus |
2R | 24535461..24535580 | 916..1035 | 100 | <- | Minus |
2R | 24535632..24536303 | 244..915 | 100 | <- | Minus |
LD44757.hyp Sequence
Translation from 60 to 1721
> LD44757.hyp
MDNSVILIDDSQNSVVIVDDDVEDGELEDDVVFVCPEELTRKEIEPPTDK
IEEKHSNTSIQDTTEEDGDSLVFEVRFNKEAHFTSLQQQVLVALEGAFAD
KQIVFRDNPQELMISAFERSRTLPEEEPQDLFLIDTQPAAKLNAANVPSY
KRCNADILDEQTEERKKLKAEAVNKCFRPKAQSSCFNCGDTEHSLRDCTK
PRNNSRITRARKKMTSRTERYHVDTEQRFGHIRPGKISTKTRHAMGYSRG
QLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESE
TFKYDVNKIVEYPGFNVQPKANCFDDFKHHNVPPFQESQSKENFIKSLGE
NVINGYKRKKLVDLPAPHDRVPAPSELLTSFDDYDMELEEETEDPPLPPS
VPPPQPPPPEECEDGELTARSPSPSLEDLKAQQEELLQELDVNASHNTTA
NESKSPTDLDDTSETEVGPSAAESGNNEQSRSAPSTPFKASYEGTPLLKF
SVYDRLPVGSNFKVGVSDVINFENLPDSTGKYEQMKDLLKNVREKMVKLQ
NEN*
LD44757.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-PC | 553 | CG4622-PC | 1..553 | 1..553 | 2892 | 100 | Plus |
CG4622-PA | 553 | CG4622-PA | 1..553 | 1..553 | 2892 | 100 | Plus |
LD44757.pep Sequence
Translation from 60 to 1721
> LD44757.pep
MDNSVILIDDSQNSVVIVDDDVEDGELEDDVVFVCPEELTRKEIEPPTDK
IEEKHSNTSIQDTTEEDGDSLVFEVRFNKEAHFTSLQQQVLVALEGAFAD
KQIVFRDNPQELMISAFERSRTLPEEEPQDLFLIDTQPAAKLNAANVPSY
KRCNADILDEQTEERKKLKAEAVNKCFRPKAQSSCFNCGDTEHSLRDCTK
PRNNSRITRARKKMTSRTERYHVDTEQRFGHIRPGKISTKTRHAMGYSRG
QLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESE
TFKYDVNKIVEYPGFNVQPKANCFDDFKHHNVPPFQESQSKENFIKSLGE
NVINGYKRKKLVDLPAPHDRVPAPSELLTSFDDYDMELEEETEDPPLPPS
VPPPQPPPPEECEDGELTARSPSPSLEDLKAQQEELLQELDVNASHNTTA
NESKSPTDLDDTSETEVGPSAAESGNNEQSRSAPSTPFKASYEGTPLLKF
SVYDRLPVGSNFKVGVSDVINFENLPDSTGKYEQMKDLLKNVREKMVKLQ
NEN*
LD44757.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19769-PA | 69 | GG19769-PA | 1..60 | 1..61 | 215 | 75.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4622-PC | 553 | CG4622-PC | 1..553 | 1..553 | 2892 | 100 | Plus |
CG4622-PA | 553 | CG4622-PA | 1..553 | 1..553 | 2892 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA18309-PA | 554 | GA18309-PA | 1..554 | 1..553 | 1662 | 59.3 | Plus |