Clone LD44757 Report

Search the DGRC for LD44757

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:447
Well:57
Vector:pOT2
Associated Gene/TranscriptCG4622-RA
Protein status:LD44757.pep: gold
Preliminary Size:1877
Sequenced Size:1871

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4622 2001-01-01 Release 2 assignment
CG4622 2001-10-10 Blastp of sequenced clone
CG4622 2003-01-01 Sim4 clustering to Release 3
CG4622 2008-04-29 Release 5.5 accounting
CG4622 2008-08-15 Release 5.9 accounting
CG4622 2008-12-18 5.12 accounting

Clone Sequence Records

LD44757.complete Sequence

1871 bp (1871 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061482

> LD44757.complete
AAATAACAAATATTTTCAAGCAAATCTGAATTATCAGAGAAAACCCCGTT
TTAAACAGAAATGGACAACAGCGTTATACTGATAGACGATTCACAAAACA
GCGTGGTGATTGTGGATGACGACGTGGAAGATGGGGAGCTGGAAGACGAT
GTGGTGTTCGTCTGTCCCGAAGAATTGACCAGAAAAGAGATCGAACCTCC
AACCGACAAAATTGAGGAAAAACACTCAAATACATCGATTCAGGACACCA
CCGAGGAAGATGGGGATAGCCTGGTCTTCGAAGTTCGATTTAACAAGGAA
GCGCACTTCACCAGTCTGCAGCAGCAAGTGCTCGTCGCCTTGGAAGGCGC
TTTTGCAGACAAGCAAATTGTGTTCCGGGACAACCCACAGGAACTAATGA
TATCAGCCTTCGAAAGAAGTAGGACCTTGCCAGAGGAGGAGCCCCAAGAC
CTCTTCCTGATCGACACTCAGCCAGCGGCCAAGCTGAATGCCGCAAACGT
TCCCTCCTACAAGCGCTGCAATGCCGACATCCTGGACGAGCAGACGGAAG
AACGGAAAAAACTGAAGGCAGAGGCGGTCAACAAGTGCTTTCGACCCAAG
GCGCAGTCGTCGTGCTTCAATTGCGGCGACACAGAGCACTCCCTACGCGA
CTGTACCAAGCCAAGAAACAATTCAAGGATAACGCGCGCTCGCAAAAAGA
TGACCAGCCGCACAGAGCGCTATCACGTCGATACAGAGCAGCGGTTCGGT
CACATACGCCCCGGCAAGATCAGCACTAAGACGCGCCATGCCATGGGCTA
CAGTCGCGGCCAGTTGCCCTTCATTTTCTACCGCATGCGAGTGCTGGGCT
ATCCGCCTGCTTGGCTGGAGGAGGCAAAGGTGCAGAGCTCGGGCATAGCT
CTGTTTAATGCAGATGGCTCGGAGGTTACAAAATCCGACGAGGAAGAGGG
AGAGTCCGAAACCTTTAAATACGACGTCAACAAAATAGTGGAGTATCCCG
GCTTCAACGTCCAGCCTAAGGCCAATTGTTTCGACGATTTTAAGCACCAC
AATGTACCGCCATTCCAAGAGAGCCAGTCCAAGGAGAACTTCATTAAATC
GTTGGGCGAAAACGTGATCAACGGTTACAAGCGCAAGAAGCTAGTGGATT
TGCCTGCTCCACACGACCGTGTTCCCGCTCCCAGCGAGTTGCTGACCAGC
TTCGATGACTACGACATGGAACTAGAAGAGGAAACAGAGGACCCTCCACT
GCCACCATCAGTGCCCCCGCCGCAACCACCTCCGCCCGAAGAGTGCGAAG
ATGGCGAACTGACAGCGCGCTCGCCATCTCCAAGCCTGGAAGATTTGAAG
GCCCAGCAGGAGGAGCTCCTCCAAGAGCTGGATGTTAATGCGTCGCATAA
CACGACAGCGAATGAATCGAAATCACCAACCGACCTGGATGACACGTCTG
AGACGGAGGTTGGTCCATCTGCTGCCGAGTCCGGAAATAATGAGCAGTCC
CGATCAGCACCCTCGACTCCCTTTAAGGCGTCTTATGAGGGCACGCCTTT
GCTGAAATTCTCCGTTTACGACAGACTGCCTGTGGGCAGCAACTTTAAGG
TGGGCGTCAGCGATGTGATCAACTTTGAAAACCTGCCCGACTCCACGGGA
AAGTACGAACAAATGAAGGATCTGCTAAAGAACGTACGCGAAAAGATGGT
GAAACTGCAGAACGAGAACTGACGAGACCAGGGAGACGGCAATACAAACC
ACATCAATTCCCGCCCACCATATGTACATTTTAAAGATTTTAAAGCCTCT
TGTACAAAGGAAATACACAAGGAAAGCGGTTAGTTTTCCAAAGTCTTTTA
AAAAAAAAAAAAAAAAAAAAA

LD44757.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-RA 2063 CG4622-RA 166..2019 1..1854 9270 100 Plus
CG4622-RC 2698 CG4622-RC 908..2698 59..1849 8955 100 Plus
CG13585-RA 787 CG13585-RA 700..787 1854..1767 440 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20419289..20420102 1849..1036 4070 100 Minus
chr2R 21145070 chr2R 20420329..20421007 916..238 3380 99.9 Minus
chr2R 21145070 chr2R 20421056..20421299 244..1 1190 99.2 Minus
chr2R 21145070 chr2R 20420158..20420278 1036..916 605 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24533369..24534187 1854..1036 4095 100 Minus
2R 25286936 2R 24534414..24535092 916..238 3380 99.9 Minus
2R 25286936 2R 24535141..24535384 244..1 1220 100 Minus
2R 25286936 2R 24534243..24534363 1036..916 605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24534568..24535386 1854..1036 4095 100 Minus
2R 25260384 2R 24535613..24536291 916..238 3380 99.8 Minus
2R 25260384 2R 24536340..24536583 244..1 1220 100 Minus
2R 25260384 2R 24535442..24535562 1036..916 605 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:36:02 has no hits.

LD44757.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:36:49 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20419289..20420102 1036..1849 100 <- Minus
chr2R 20420159..20420278 916..1035 100 <- Minus
chr2R 20420330..20421001 244..915 100 <- Minus
chr2R 20421057..20421299 1..243 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:53 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 1..1662 61..1722 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:28 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RC 1..1662 61..1722 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:08:20 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 1..1662 61..1722 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:14 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 1..1662 61..1722 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:37:26 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 1..1662 61..1722 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:47 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 39..1887 1..1849 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:27 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 26..1874 1..1849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:08:20 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 44..1892 1..1849 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:15 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 39..1887 1..1849 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:37:26 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RA 44..1892 1..1849 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:49 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24534244..24534363 916..1035 100 <- Minus
2R 24533374..24534187 1036..1849 100 <- Minus
2R 24534415..24535086 244..915 100 <- Minus
2R 24535142..24535384 1..243 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:49 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24534244..24534363 916..1035 100 <- Minus
2R 24533374..24534187 1036..1849 100 <- Minus
2R 24534415..24535086 244..915 100 <- Minus
2R 24535142..24535384 1..243 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:49 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24534244..24534363 916..1035 100 <- Minus
2R 24533374..24534187 1036..1849 100 <- Minus
2R 24534415..24535086 244..915 100 <- Minus
2R 24535142..24535384 1..243 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:08:20 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20420897..20421710 1036..1849 100 <- Minus
arm_2R 20421767..20421886 916..1035 100 <- Minus
arm_2R 20421938..20422609 244..915 100 <- Minus
arm_2R 20422665..20422907 1..243 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:28 Download gff for LD44757.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24536359..24536601 1..243 100   Minus
2R 24534591..24535404 1036..1849 100 <- Minus
2R 24535461..24535580 916..1035 100 <- Minus
2R 24535632..24536303 244..915 100 <- Minus

LD44757.hyp Sequence

Translation from 60 to 1721

> LD44757.hyp
MDNSVILIDDSQNSVVIVDDDVEDGELEDDVVFVCPEELTRKEIEPPTDK
IEEKHSNTSIQDTTEEDGDSLVFEVRFNKEAHFTSLQQQVLVALEGAFAD
KQIVFRDNPQELMISAFERSRTLPEEEPQDLFLIDTQPAAKLNAANVPSY
KRCNADILDEQTEERKKLKAEAVNKCFRPKAQSSCFNCGDTEHSLRDCTK
PRNNSRITRARKKMTSRTERYHVDTEQRFGHIRPGKISTKTRHAMGYSRG
QLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESE
TFKYDVNKIVEYPGFNVQPKANCFDDFKHHNVPPFQESQSKENFIKSLGE
NVINGYKRKKLVDLPAPHDRVPAPSELLTSFDDYDMELEEETEDPPLPPS
VPPPQPPPPEECEDGELTARSPSPSLEDLKAQQEELLQELDVNASHNTTA
NESKSPTDLDDTSETEVGPSAAESGNNEQSRSAPSTPFKASYEGTPLLKF
SVYDRLPVGSNFKVGVSDVINFENLPDSTGKYEQMKDLLKNVREKMVKLQ
NEN*

LD44757.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-PC 553 CG4622-PC 1..553 1..553 2892 100 Plus
CG4622-PA 553 CG4622-PA 1..553 1..553 2892 100 Plus

LD44757.pep Sequence

Translation from 60 to 1721

> LD44757.pep
MDNSVILIDDSQNSVVIVDDDVEDGELEDDVVFVCPEELTRKEIEPPTDK
IEEKHSNTSIQDTTEEDGDSLVFEVRFNKEAHFTSLQQQVLVALEGAFAD
KQIVFRDNPQELMISAFERSRTLPEEEPQDLFLIDTQPAAKLNAANVPSY
KRCNADILDEQTEERKKLKAEAVNKCFRPKAQSSCFNCGDTEHSLRDCTK
PRNNSRITRARKKMTSRTERYHVDTEQRFGHIRPGKISTKTRHAMGYSRG
QLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESE
TFKYDVNKIVEYPGFNVQPKANCFDDFKHHNVPPFQESQSKENFIKSLGE
NVINGYKRKKLVDLPAPHDRVPAPSELLTSFDDYDMELEEETEDPPLPPS
VPPPQPPPPEECEDGELTARSPSPSLEDLKAQQEELLQELDVNASHNTTA
NESKSPTDLDDTSETEVGPSAAESGNNEQSRSAPSTPFKASYEGTPLLKF
SVYDRLPVGSNFKVGVSDVINFENLPDSTGKYEQMKDLLKNVREKMVKLQ
NEN*

LD44757.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19769-PA 69 GG19769-PA 1..60 1..61 215 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4622-PC 553 CG4622-PC 1..553 1..553 2892 100 Plus
CG4622-PA 553 CG4622-PA 1..553 1..553 2892 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18309-PA 554 GA18309-PA 1..554 1..553 1662 59.3 Plus