Clone LD44791 Report

Search the DGRC for LD44791

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:447
Well:91
Vector:pOT2
Associated Gene/TranscriptJhI-26-RA
Protein status:LD44791.pep: gold
Preliminary Size:1633
Sequenced Size:1496

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3767 2001-01-01 Release 2 assignment
CG3767 2001-11-02 Blastp of sequenced clone
CG3767 2003-01-01 Sim4 clustering to Release 3
JhI-26 2008-04-29 Release 5.5 accounting
JhI-26 2008-08-15 Release 5.9 accounting
JhI-26 2008-12-18 5.12 accounting

Clone Sequence Records

LD44791.complete Sequence

1496 bp (1496 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069673

> LD44791.complete
CGAAGCGGTTGGGATCGTCAGTACCGACGAAATGGAGAAGATCGAGGCTG
AGAGGCAATGGCTGAGATACACGGTTCTTCCGTCAATTCTGAGGAACGGG
CGCCTGGTGGACAACTACAGCGAGTCCAAGGTGACCACATTCCATGTGGG
GGACATCGACATTGATGTAATTGGCCACTCGGAGGCCTTTATGCTAACTT
TTTGCTACCGGACAACCATTAATTTTGAATACGACGGGCAAAAGTTTCAG
CGAAAAATGGTGGTTAAGAAAACACCTGCTATGCCACCAGAAATGTATGA
ATCCATACAGTTTGGGCCCCTTTTTACCAACGAGATAAATTTCTATACGG
AAATTCTGCCAGAGTTTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCC
AAGTACTATTACGGCGAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGA
GAATTTCGCGGAGCAGGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGA
GTCTGCAGCACGCCATGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGC
TTTGCGTACGCCATGAAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGAC
TGACAATCTGAAGGAATCTCGCTATGCCAACGATAACATTCATCCGGAAT
GGAAGCTCACCATGAAAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCC
ACCTATCAGCCACAGATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCAT
GATCTCGGACTATTCGCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGC
CACTGGCCACCCTGTGCCACGGCGATTATGTGAGGAATAATGTGGCGTAC
AGGTACGATGACAAGGAGGAGCCGCAGGAGATCATGATGTTCGACTACCA
GACATTGCGAGTCTCCTCTCCCATGGTCGATCTCAACGTCTTTCTAGCCG
TGTCCATTTTTGCCGAGGTACGCGATCCAAACTTCGAGGCCATCTTCTGT
GAATACACCTTGGCGCTTCATAATAGCTATAGGGAGCACGCCAAGGAGGA
GGTTCCGGATTTCCTAAGTCGCGGTGAGCTTCTGAAGGAGTACGTGCGTT
TCCTGCCGTACAGCTTATCCATATCGGCCAGTTTCCTCATGAGTTTGGTG
GATCCCTTGGACATCTCGCCCGAGGAGATGTTCGCCTTGCAACTGTCTGA
CGAGGAAATCATCGAACGGACCATGAATCGAGGTGGAGAAGTTGTGGACA
GGGAGGTTGCTCACCAGGTTAAGGAAATGCTGGAGCTGAGCCAGGCGACA
GGGGTGTCCATTGATGACGGCATTGATCTTGACAAGTTGCCCAAGGAGTA
ATCAATTGATAGCCTAATGTAAAAGTATTCAGGCATTTCAGGTATAGCGT
AACTGTAGATAATAAAATAGATGTTAAAGTGACATGCATTACCTATTTAG
AGTTTAATACACTGTTTAACCGTGAAAAAAAAAAAAAAAAAAAAAA

LD44791.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-RA 1615 JhI-26-RA 27..1501 1..1475 7375 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12177302..12178103 267..1068 3950 99.5 Plus
chr2R 21145070 chr2R 12178279..12178686 1067..1474 2025 99.8 Plus
chr2R 21145070 chr2R 12176694..12176961 1..268 1295 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16289950..16290751 267..1068 4010 100 Plus
2R 25286936 2R 16290926..16291334 1067..1475 2045 100 Plus
2R 25286936 2R 16289341..16289608 1..268 1340 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16291149..16291950 267..1068 4010 100 Plus
2R 25260384 2R 16292125..16292533 1067..1475 2045 100 Plus
2R 25260384 2R 16290540..16290807 1..268 1340 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:42:37 has no hits.

LD44791.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:43:49 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12176694..12176961 1..268 98 -> Plus
chr2R 12177304..12178103 269..1068 99 -> Plus
chr2R 12178281..12178686 1069..1474 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:27:57 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 1..1320 32..1351 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:20 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 1..1320 32..1351 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:56 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 1..1320 32..1351 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:03:34 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 1..1320 32..1351 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:46 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 1..1320 32..1351 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:15 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 17..1487 1..1471 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:20 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 17..1490 1..1474 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:56 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 22..1495 1..1474 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:03:34 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 17..1487 1..1471 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:46 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 22..1495 1..1474 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:49 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16289341..16289608 1..268 100 -> Plus
2R 16289952..16290751 269..1068 100 -> Plus
2R 16290928..16291333 1069..1474 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:49 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16289341..16289608 1..268 100 -> Plus
2R 16289952..16290751 269..1068 100 -> Plus
2R 16290928..16291333 1069..1474 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:49 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16289341..16289608 1..268 100 -> Plus
2R 16289952..16290751 269..1068 100 -> Plus
2R 16290928..16291333 1069..1474 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:56 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12176846..12177113 1..268 100 -> Plus
arm_2R 12177457..12178256 269..1068 100 -> Plus
arm_2R 12178433..12178838 1069..1474 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:01 Download gff for LD44791.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16290540..16290807 1..268 100 -> Plus
2R 16291151..16291950 269..1068 100 -> Plus
2R 16292127..16292532 1069..1474 100   Plus

LD44791.hyp Sequence

Translation from 0 to 1350

> LD44791.hyp
EAVGIVSTDEMEKIEAERQWLRYTVLPSILRNGRLVDNYSESKVTTFHVG
DIDIDVIGHSEAFMLTFCYRTTINFEYDGQKFQRKMVVKKTPAMPPEMYE
SIQFGPLFTNEINFYTEILPEFQKFTDGKFAAPKYYYGELNQHSAVAILE
NFAEQGWRVTKDRVGLSLQHAMIAVSYLGRFHGFAYAMKHKNPEKFAQLT
DNLKESRYANDNIHPEWKLTMKTSIDRAAKAVATYQPQIDEEFVKKFCFM
ISDYSQYGRQRVAPREPLATLCHGDYVRNNVAYRYDDKEEPQEIMMFDYQ
TLRVSSPMVDLNVFLAVSIFAEVRDPNFEAIFCEYTLALHNSYREHAKEE
VPDFLSRGELLKEYVRFLPYSLSISASFLMSLVDPLDISPEEMFALQLSD
EEIIERTMNRGGEVVDREVAHQVKEMLELSQATGVSIDDGIDLDKLPKE*

LD44791.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-PA 439 CG3767-PA 1..439 11..449 2292 100 Plus
CG14314-PA 438 CG14314-PA 64..408 69..414 236 24.2 Plus
CG2004-PG 425 CG2004-PG 66..362 78..367 221 26.1 Plus
CG2004-PF 425 CG2004-PF 66..362 78..367 221 26.1 Plus
CG2004-PD 425 CG2004-PD 66..362 78..367 221 26.1 Plus

LD44791.pep Sequence

Translation from 31 to 1350

> LD44791.pep
MEKIEAERQWLRYTVLPSILRNGRLVDNYSESKVTTFHVGDIDIDVIGHS
EAFMLTFCYRTTINFEYDGQKFQRKMVVKKTPAMPPEMYESIQFGPLFTN
EINFYTEILPEFQKFTDGKFAAPKYYYGELNQHSAVAILENFAEQGWRVT
KDRVGLSLQHAMIAVSYLGRFHGFAYAMKHKNPEKFAQLTDNLKESRYAN
DNIHPEWKLTMKTSIDRAAKAVATYQPQIDEEFVKKFCFMISDYSQYGRQ
RVAPREPLATLCHGDYVRNNVAYRYDDKEEPQEIMMFDYQTLRVSSPMVD
LNVFLAVSIFAEVRDPNFEAIFCEYTLALHNSYREHAKEEVPDFLSRGEL
LKEYVRFLPYSLSISASFLMSLVDPLDISPEEMFALQLSDEEIIERTMNR
GGEVVDREVAHQVKEMLELSQATGVSIDDGIDLDKLPKE*

LD44791.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13586-PA 441 GF13586-PA 1..437 1..438 1487 65.3 Plus
Dana\GF13588-PA 367 GF13588-PA 4..367 76..439 1385 69.8 Plus
Dana\GF18512-PA 449 GF18512-PA 80..385 64..357 255 26.5 Plus
Dana\GF19128-PA 426 GF19128-PA 48..363 55..357 232 27 Plus
Dana\GF15043-PA 413 GF15043-PA 117..332 123..335 181 26.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20590-PA 439 GG20590-PA 1..439 1..439 2060 84.7 Plus
Dere\GG22726-PA 438 GG22726-PA 64..336 59..326 243 26.2 Plus
Dere\GG19026-PA 425 GG19026-PA 66..346 68..351 225 25.6 Plus
Dere\GG15046-PA 459 GG15046-PA 122..423 98..382 191 23.5 Plus
Dere\GG23632-PA 417 GG23632-PA 57..308 59..313 187 24.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22112-PA 446 GH22112-PA 5..435 4..432 1345 56.1 Plus
Dgri\GH15763-PA 443 GH15763-PA 76..345 68..330 224 26.1 Plus
Dgri\GH12330-PA 420 GH12330-PA 59..323 66..325 220 24.6 Plus
Dgri\GH14961-PA 452 GH14961-PA 117..423 98..393 211 23.2 Plus
Dgri\GH10406-PA 415 GH10406-PA 51..333 57..349 186 22.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-PA 439 CG3767-PA 1..439 1..439 2292 100 Plus
CG14314-PA 438 CG14314-PA 64..408 59..404 236 24.2 Plus
CG2004-PG 425 CG2004-PG 66..362 68..357 221 26.1 Plus
CG2004-PF 425 CG2004-PF 66..362 68..357 221 26.1 Plus
CG2004-PD 425 CG2004-PD 66..362 68..357 221 26.1 Plus
CG2004-PC 425 CG2004-PC 66..362 68..357 221 26.1 Plus
CG2004-PA 425 CG2004-PA 66..362 68..357 221 26.1 Plus
CG5644-PA 459 CG5644-PA 43..443 29..417 198 20.1 Plus
CG11891-PI 417 CG11891-PI 16..308 25..314 194 22.9 Plus
CG11891-PH 417 CG11891-PH 16..308 25..314 194 22.9 Plus
CG16898-PA 407 CG16898-PA 85..300 97..315 191 27.9 Plus
CG10513-PB 422 CG10513-PB 101..333 99..335 191 25.4 Plus
CG31975-PC 416 CG31975-PC 55..343 68..344 183 24.7 Plus
CG31975-PB 416 CG31975-PB 55..343 68..344 183 24.7 Plus
CG9497-PB 417 CG9497-PB 57..308 59..313 183 23.5 Plus
CG9497-PA 417 CG9497-PA 57..308 59..313 183 23.5 Plus
CG9498-PA 424 CG9498-PA 76..396 73..399 180 21.9 Plus
CG33301-PB 407 CG33301-PB 56..327 68..342 176 24.1 Plus
CG33301-PA 407 CG33301-PA 56..327 68..342 176 24.1 Plus
CG11889-PB 417 CG11889-PB 53..308 61..314 176 24.2 Plus
CG11889-PA 417 CG11889-PA 53..308 61..314 176 24.2 Plus
CG6908-PB 415 CG6908-PB 86..316 90..325 174 26.5 Plus
CG6908-PA 449 CG6908-PA 120..350 90..325 174 26.5 Plus
CG13360-PA 421 CG13360-PA 78..391 76..396 170 23.6 Plus
CG13659-PA 417 CG13659-PA 57..299 59..301 168 23.9 Plus
CG7135-PA 417 CG7135-PA 52..367 59..373 165 24.1 Plus
CG13658-PB 422 CG13658-PB 20..304 10..301 163 22 Plus
CG11893-PA 416 CG11893-PA 20..299 10..302 161 22.3 Plus
CG1561-PB 635 CG1561-PB 275..533 73..325 159 24.2 Plus
CG33511-PB 415 CG33511-PB 58..296 68..314 156 24.3 Plus
CG11878-PA 420 CG11878-PA 56..311 61..314 156 22.8 Plus
CG32195-PC 401 CG32195-PC 77..335 97..360 155 26.8 Plus
CG32195-PB 401 CG32195-PB 77..335 97..360 155 26.8 Plus
CG32195-PA 401 CG32195-PA 77..335 97..360 155 26.8 Plus
CG5126-PA 455 CG5126-PA 58..448 70..418 154 20.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19246-PA 457 GI19246-PA 5..442 4..439 1364 55.9 Plus
Dmoj\GI19247-PA 457 GI19247-PA 5..435 4..432 1361 58.5 Plus
Dmoj\GI11487-PA 444 GI11487-PA 37..415 29..393 242 22.7 Plus
Dmoj\GI15575-PA 420 GI15575-PA 59..323 66..325 213 24.6 Plus
Dmoj\GI23724-PA 447 GI23724-PA 68..371 59..353 211 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10724-PA 439 GL10724-PA 1..438 1..438 1725 70.1 Plus
Dper\GL10725-PA 434 GL10725-PA 1..431 1..431 1624 67.5 Plus
Dper\GL12598-PA 448 GL12598-PA 84..345 70..326 238 28 Plus
Dper\GL15044-PA 456 GL15044-PA 116..415 98..382 223 24.6 Plus
Dper\GL13040-PA 424 GL13040-PA 77..327 83..325 219 26 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17673-PA 439 GA17673-PA 1..438 1..438 1722 69.9 Plus
Dpse\GA24458-PA 434 GA24458-PA 1..431 1..431 1615 67.1 Plus
Dpse\GA27957-PA 89 GA27957-PA 1..79 1..79 307 70.9 Plus
Dpse\GA12901-PA 448 GA12901-PA 84..345 70..326 244 28 Plus
Dpse\GA19027-PA 456 GA19027-PA 116..415 98..382 223 24.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21682-PA 439 GM21682-PA 1..439 1..439 2265 95 Plus
Dsec\GM15287-PA 439 GM15287-PA 65..337 59..326 241 27.2 Plus
Dsec\GM21117-PA 425 GM21117-PA 66..362 68..357 217 26.1 Plus
Dsec\GM24900-PA 459 GM24900-PA 43..418 29..382 200 22.6 Plus
Dsec\GM23388-PA 420 GM23388-PA 91..336 94..359 181 27.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11182-PA 81 GD11182-PA 1..79 1..79 411 94.9 Plus
Dsim\GD19214-PA 368 GD19214-PA 65..337 59..326 239 26.9 Plus
Dsim\GD16097-PA 425 GD16097-PA 66..362 68..357 224 26.7 Plus
Dsim\GD12950-PA 474 GD12950-PA 58..433 29..382 207 22.6 Plus
Dsim\GD18217-PA 439 GD18217-PA 118..344 99..329 190 27.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15533-PA 446 GJ15533-PA 5..435 4..432 1406 59.9 Plus
Dvir\GJ20324-PA 446 GJ20324-PA 5..435 4..432 1404 60.1 Plus
Dvir\GJ20323-PA 453 GJ20323-PA 5..435 4..432 1375 57.1 Plus
Dvir\GJ15532-PA 423 GJ15532-PA 1..412 23..432 1327 60.2 Plus
Dvir\GJ13682-PA 443 GJ13682-PA 105..414 95..393 240 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20724-PA 436 GK20724-PA 5..436 4..439 1414 58.9 Plus
Dwil\GK20725-PA 399 GK20725-PA 5..384 4..383 1065 53.3 Plus
Dwil\GK11249-PA 440 GK11249-PA 77..377 71..357 254 27.1 Plus
Dwil\GK12285-PA 492 GK12285-PA 152..439 98..375 211 24.6 Plus
Dwil\GK10325-PA 424 GK10325-PA 77..348 83..354 192 23.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\JhI-26-PA 439 GE11775-PA 1..438 1..438 2013 85.2 Plus
Dyak\GE25520-PA 438 GE25520-PA 64..336 59..326 242 26.1 Plus
Dyak\GE17434-PA 425 GE17434-PA 66..362 68..357 226 26.7 Plus
Dyak\GE13825-PA 407 GE13825-PA 85..326 97..350 190 26.7 Plus
Dyak\GE10718-PA 439 GE10718-PA 118..350 99..335 187 24.4 Plus