Clone LD44813 Report

Search the DGRC for LD44813

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:448
Well:13
Vector:pOT2
Associated Gene/TranscriptCG17260-RA
Protein status:LD44813.pep: gold
Preliminary Size:1466
Sequenced Size:1282

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17260 2001-01-01 Release 2 assignment
CG17260 2001-11-02 Blastp of sequenced clone
CG17260 2003-01-01 Sim4 clustering to Release 3
CG17260 2008-04-29 Release 5.5 accounting
CG17260 2008-08-15 Release 5.9 accounting
CG17260 2008-12-18 5.12 accounting

Clone Sequence Records

LD44813.complete Sequence

1282 bp (1282 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069674

> LD44813.complete
CTGTTCAAAATAGTCCAATAGGAGGAGAACAGCAGCGAATTCGCAACAGA
TTCCGACTTCAACAATGAGCTTTATTGACCAGGAAGTCACGGAGTTCCGA
GCAAAATGTGAGAAGCAGGTGCCGCACACGAAGATCATTATTTGCTCCAA
CTCGCTGATCCGGGTTGACATATACCCGGAGCGGCCGAATCGCTCGATGA
CTATGTGCCTTCGATTTCCAGAAAACTACCCGCAGAGCACCCAAATTCTG
GTGGAGCTGAAGAGTCGTGTGTACTCCGAAATGCTTCTGACGGAGCTTAC
CCGGCTGATCGACGACTATGCCAGGGATTTCATCGGGAAGCCACAGGCAT
TGCAAGTGCTGGCCTTCGCCCAACAGTATTTAACTGATAATCCGCTGTGC
GTGTGCTTGGAGGAGATCAAGCAGCTGAGAGCGGACATCAAGACTGGAGG
CACGGAGAGCCAGTTGAAGCTGAAGCAGAAGAACAAAAGCGTGGAGCTGG
TCGCCAAGGGCGGACGCTACACCTACAGAGTAATCGCTGTTGTTCCGGAC
AGCTATCCCATGCAGAGTGTGGAGCTGCGCGGTCAAGATTCCAATCTCCC
AGCCGTGCTCGTGCGTTACCTAAACGGCCAGTCAAAGGAAATAGCCCGGC
AGTGCGTGGAGCCACCGATCCGTATGAGCAAGGAGGCTCTAGCCAATTTT
CGGCCTGTTAGGAGTCTGCAACGCTCGCTGAAATTCTGCCTGGAAGCCAC
CCGGGACTTTCACACCGAGCGTTGTCCCATATGTGATAGTACCGTGCTAC
CCGAATACCCAGAGGACATAGAAACGGATGACAATGCCGACTTCTTCATC
GAGCGCGTCTACTGTGGTCATCTCTTTCACCAAGGCTGCCTTAAGAAATA
CCTATCGGAGCCTCCGTTTCCAAAGGGTGGCAAATTATGTCCCGCCGCGC
GTCGCCATCCTCGTTCCGATGCCCAGACCTATATGGGCAGGTCACAGGGA
GGAGGAGCCACCGTTTCCAAAACTCCGGAGGACACTGTGTGCGGCATCAA
GCTGGCTCACGATCGGTGGGTGGTCAGCGTAAAGACCGCAGAGGCGCGCT
GGGCCCAGAAACAGGCTCGCCAAAGAGAACTGGAGGAGGTGGTCGACTTT
CTGCAATAACAGATGATCGACTCAAGAACAGCTTACTGTGTATGGTTATG
TATTTTGTGATTTCTATTCGAATACGCTTATATTGCTAAAGATTAAATAA
ATAAAGTGAAGATGAAAAAAAAAAAAAAAAAA

LD44813.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17260.a 1341 CG17260.a 70..1335 1..1266 6330 100 Plus
CG17260-RA 1383 CG17260-RA 120..1383 1..1264 6320 100 Plus
cnir-RA 1076 cnir-RA 953..1076 1266..1143 620 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3037178..3038441 1..1264 6320 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3037530..3038795 1..1266 6330 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3037530..3038795 1..1266 6330 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:35:53 has no hits.

LD44813.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:36:56 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3037178..3038441 1..1264 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:00 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 1..1095 65..1159 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:22 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 1..1095 65..1159 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:08:45 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 1..1095 65..1159 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:03:36 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 1..1095 65..1159 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:19 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 1..1095 65..1159 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:17 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 120..1383 1..1264 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:21 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 120..1383 1..1264 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:08:45 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 120..1383 1..1264 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:03:37 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 120..1383 1..1264 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:19 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
CG17260-RA 120..1383 1..1264 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:56 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3037530..3038793 1..1264 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:56 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3037530..3038793 1..1264 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:36:56 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3037530..3038793 1..1264 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:08:45 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3037530..3038793 1..1264 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:02 Download gff for LD44813.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3037530..3038793 1..1264 100   Plus

LD44813.pep Sequence

Translation from 64 to 1158

> LD44813.pep
MSFIDQEVTEFRAKCEKQVPHTKIIICSNSLIRVDIYPERPNRSMTMCLR
FPENYPQSTQILVELKSRVYSEMLLTELTRLIDDYARDFIGKPQALQVLA
FAQQYLTDNPLCVCLEEIKQLRADIKTGGTESQLKLKQKNKSVELVAKGG
RYTYRVIAVVPDSYPMQSVELRGQDSNLPAVLVRYLNGQSKEIARQCVEP
PIRMSKEALANFRPVRSLQRSLKFCLEATRDFHTERCPICDSTVLPEYPE
DIETDDNADFFIERVYCGHLFHQGCLKKYLSEPPFPKGGKLCPAARRHPR
SDAQTYMGRSQGGGATVSKTPEDTVCGIKLAHDRWVVSVKTAEARWAQKQ
ARQRELEEVVDFLQ*

LD44813.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14397-PA 365 GF14397-PA 1..365 1..364 1711 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24914-PA 364 GG24914-PA 1..364 1..364 1878 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11399-PA 373 GH11399-PA 1..373 1..364 1347 68.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17260-PB 364 CG17260-PB 1..364 1..364 1907 100 Plus
CG17260-PC 364 CG17260-PC 1..364 1..364 1907 100 Plus
CG17260-PA 364 CG17260-PA 1..364 1..364 1907 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14531-PA 372 GI14531-PA 1..372 1..364 1418 71.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18546-PA 382 GL18546-PA 1..382 1..364 1558 75.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14421-PA 382 GA14421-PA 1..382 1..364 1558 75.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18390-PA 364 GM18390-PA 1..364 1..364 1923 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23202-PA 346 GD23202-PA 1..346 1..364 1808 93.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16934-PA 373 GJ16934-PA 1..373 1..364 1430 71.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15180-PA 380 GK15180-PA 1..380 1..364 1450 71.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18205-PA 364 GE18205-PA 1..364 1..364 1897 96.4 Plus

LD44813.hyp Sequence

Translation from 64 to 1158

> LD44813.hyp
MSFIDQEVTEFRAKCEKQVPHTKIIICSNSLIRVDIYPERPNRSMTMCLR
FPENYPQSTQILVELKSRVYSEMLLTELTRLIDDYARDFIGKPQALQVLA
FAQQYLTDNPLCVCLEEIKQLRADIKTGGTESQLKLKQKNKSVELVAKGG
RYTYRVIAVVPDSYPMQSVELRGQDSNLPAVLVRYLNGQSKEIARQCVEP
PIRMSKEALANFRPVRSLQRSLKFCLEATRDFHTERCPICDSTVLPEYPE
DIETDDNADFFIERVYCGHLFHQGCLKKYLSEPPFPKGGKLCPAARRHPR
SDAQTYMGRSQGGGATVSKTPEDTVCGIKLAHDRWVVSVKTAEARWAQKQ
ARQRELEEVVDFLQ*

LD44813.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17260-PB 364 CG17260-PB 1..364 1..364 1907 100 Plus
CG17260-PC 364 CG17260-PC 1..364 1..364 1907 100 Plus
CG17260-PA 364 CG17260-PA 1..364 1..364 1907 100 Plus