Clone LD44814 Report

Search the DGRC for LD44814

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:448
Well:14
Vector:pOT2
Associated Gene/TranscriptCG11980-RB
Protein status:LD44814.pep: gold
Preliminary Size:1415
Sequenced Size:1182

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11980 2001-01-01 Release 2 assignment
CG11980 2002-06-14 Blastp of sequenced clone
CG11980 2003-01-01 Sim4 clustering to Release 3
CG11980 2008-04-29 Release 5.5 accounting
CG11980 2008-08-15 Release 5.9 accounting
CG11980 2008-12-18 5.12 accounting

Clone Sequence Records

LD44814.complete Sequence

1182 bp (1182 high quality bases) assembled on 2002-06-14

GenBank Submission: AY128451

> LD44814.complete
TCGCTAATGTTCCGATTGTTACCTCGTTTTCGAAAACTATCTATAATGAC
TGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGCACACACAGCG
GCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCTCAAGCAATTG
GATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACAACAAGGCTTT
GAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTTTATGATCATG
CCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGAGACTTTTAGT
TCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCAGGCTAAGCAG
TGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATACAGAGCATCC
TGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCTGCAAACGGCC
TTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACGCAATTGATAA
TGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAAATCTCCACTC
ATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCAGGAAACTGGC
GTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTGCAGGTCGTGA
GTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATTCCAGCCCGGG
ATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCATCCCACCGGC
GAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTCATCTGTTCGA
TCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTGGTCGTCTTCA
ACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGTGACGCCTGGCAGC
TATCTGGGCCGCAAATTTCTGCCCACTCCTTGGCGCGGACTGATGGACGA
TGAACTATGCGATAAGGCGAGCATCAAAGATCTCGAATTCATCCATCACA
CAGGATTTATTGGCGGGGCAAAAACCGAGGAGGCTGCCATGTTGTTGGCC
AAGAAATCCACCGAGTGGACAGAAGAGCAATAATATAATACGACTTAAAG
TTATGCTTTTGAAATTGAAAAACAATAATTAGATCGCATTTAATTCTGGT
GTTATTACGCATTTAAAAAAAAAAAAAAAAAA

LD44814.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RB 1318 CG11980-RB 102..1267 1..1166 5830 100 Plus
CG11980-RC 1239 CG11980-RC 56..1224 1..1166 5775 99.7 Plus
CG11980-RA 1294 CG11980-RA 109..1243 32..1166 5675 100 Plus
CG11980-RA 1294 CG11980-RA 12..43 1..32 160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4830400..4831225 339..1164 4130 100 Plus
chr3R 27901430 chr3R 4830036..4830346 32..342 1540 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005333 339..1166 4140 100 Plus
3R 32079331 3R 9004142..9004452 32..342 1555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8745337..8746164 339..1166 4140 100 Plus
3R 31820162 3R 8744973..8745283 32..342 1555 100 Plus
3R 31820162 3R 8744876..8744907 1..32 160 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:36:20 has no hits.

LD44814.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:36:58 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4829939..4829969 1..31 100 -> Plus
chr3R 4830036..4830345 32..341 99 -> Plus
chr3R 4830403..4831225 342..1164 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:01 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 1..1077 7..1083 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:19:30 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 1..1077 7..1083 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:08:24 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 1..1077 7..1083 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:33 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 1..1077 7..1083 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:37:48 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 1..1077 7..1083 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:44:53 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 28..1191 1..1164 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:19:30 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 28..1191 1..1164 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:08:24 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 29..1192 1..1164 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:34 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 28..1191 1..1164 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:37:48 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 29..1192 1..1164 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:58 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004045..9004075 1..31 100 -> Plus
3R 9004142..9004451 32..341 100 -> Plus
3R 9004509..9005331 342..1164 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:58 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004045..9004075 1..31 100 -> Plus
3R 9004142..9004451 32..341 100 -> Plus
3R 9004509..9005331 342..1164 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:58 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004045..9004075 1..31 100 -> Plus
3R 9004142..9004451 32..341 100 -> Plus
3R 9004509..9005331 342..1164 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:08:24 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829767..4829797 1..31 100 -> Plus
arm_3R 4829864..4830173 32..341 100 -> Plus
arm_3R 4830231..4831053 342..1164 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:42:51 Download gff for LD44814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8744973..8745282 32..341 100 -> Plus
3R 8745340..8746162 342..1164 100   Plus
3R 8744876..8744906 1..31 100 -> Plus

LD44814.hyp Sequence

Translation from 0 to 1082

> LD44814.hyp
SLMFRLLPRFRKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQL
DEYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFS
SVRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTA
FIQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETG
VDIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTG
EILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGS
YLGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLA
KKSTEWTEEQ*

LD44814.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 358 CG11980-PB 1..358 3..360 1903 100 Plus
CG11980-PC 359 CG11980-PC 1..359 3..360 1884 99.4 Plus
CG11980-PA 345 CG11980-PA 1..345 16..360 1839 100 Plus

LD44814.pep Sequence

Translation from 6 to 1082

> LD44814.pep
MFRLLPRFRKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLDE
YKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSSV
RPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAFI
QIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGVD
IEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGEI
LVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSYL
GRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAKK
STEWTEEQ*

LD44814.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16574-PA 359 GF16574-PA 6..359 4..357 1554 78.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14318-PA 358 GG14318-PA 1..358 1..358 1666 86.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19378-PA 352 GH19378-PA 11..352 16..357 1361 72.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 358 CG11980-PB 1..358 1..358 1903 100 Plus
CG11980-PC 359 CG11980-PC 1..359 1..358 1884 99.4 Plus
CG11980-PA 345 CG11980-PA 1..345 14..358 1839 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22581-PA 349 GI22581-PA 10..349 18..357 1329 71 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12112-PA 344 GL12112-PA 1..344 14..357 1388 72.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11307-PA 344 GA11307-PA 1..344 14..357 1403 73 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23777-PA 362 GM23777-PA 1..359 1..358 1784 92.2 Plus
Dsec\GM19272-PA 172 GM19272-PA 1..169 190..358 846 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18587-PA 362 GD18587-PA 1..357 1..356 1776 91.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10302-PA 351 GJ10302-PA 10..348 19..357 1376 72.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11675-PA 363 GK11675-PA 1..361 1..357 1377 71 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25920-PA 358 GE25920-PA 1..358 1..358 1738 89.1 Plus