Clone LD44821 Report

Search the DGRC for LD44821

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:448
Well:21
Vector:pOT2
Associated Gene/Transcriptmtsh-RC
Protein status:LD44821.pep: gold
Preliminary Size:2176
Sequenced Size:2539

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7795 2002-01-01 Sim4 clustering to Release 2
CG7795 2002-05-18 Blastp of sequenced clone
CG7795 2003-01-01 Sim4 clustering to Release 3
CG7795 2008-04-29 Release 5.5 accounting
CG7795 2008-08-15 Release 5.9 accounting
CG7795 2008-12-18 5.12 accounting

Clone Sequence Records

LD44821.complete Sequence

2539 bp (2539 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118966

> LD44821.complete
AAACCCTAGGGAGCAGACGGTTCTTACTTTTAGCCAAATCTTCGTCGTCA
GGGGATACCAACACCAGTCCGTGTAGTTGCCGCAGTGACTCGACAATCCA
CACGTGTGATTTGGATAGGATAACCTTAAAATCGAGATACGAATTCTGAG
CATTTCTGTTGTTTGCTTTCGCCAGTTTTTTTTTATTCAGTTTTAGAACC
CAACTGCCAGGCAGGATCATGAACATCCCCATCTACCAAGTGCCCTCGGT
GACCATGCAGTCGCTGCACCAGCAATCTTTGTACCAGCAAACCTATTTGG
ATCGCAATCGCATGGTCACCGATGTATTTGTGCAGGAACACGTCTCGCAG
AGCTCTTGGTCAATGGCCGGTTCATCGGCTGTTTTTATACCAGGCCCCAT
TATAACTGGTAGTGCCCATGGACACTGCCATCATACCGCGACAGTTTCGA
CTGTAAGTCCTCAATTAGCGACCTTTATGCCTTTTCCGGGCATGCAGTAC
TATGCGGCAAGCTCAGCCACGATGAACGCCTATGGCCATAATCAGATGTA
TTCTACTCGTGCTTCGGCCTCCGTCGGCTTCTATTTGCCACAGTACCATG
CAAGCTGCAGTCATGAACAGCCGAAAAAGACGTTCTGTGCGGCTCAAACG
CAGACCCAGCAGACGGCTAAGACCAGTTGCGATGTGGGCACCCAGGTGGA
TTTGGATGCTGAAGAATTGCGCTCGGAGGCTAGGAAGCCAAGACCAGAAA
GTGTTGTTCCTGAAGAATCGAGCATTAGTTCATTGGAAAGCGGCGCAGGC
GATGGTTTCCGAGTGCAAAAAAAGCTGCGCAACTCGGAGGTAAAGCTGCT
GGACCAGCGTCTCCATGATATTACCAGAGTTTCACTTCATGGCAGTGAGA
TAGCCGAACGTCTGGCCAATGCCCATCGCAATCGTCCGTGCTTCAAGAAG
ATCGATACACTGTGCGCCCGCCTGAAGCAGGATCTGCTGCGTCCGGATGG
CGTGCTGCCAAATATAAACTCACAGGGCATTGCTTGGGCCGTTAAGGATT
TCATATTCGTCTTTACGCGCATTGTGAATGCCTGGGTCATACTGAAGGGC
TACGTGTATAATACTCCCGATGCTTTGAACAAGATTAAAGATGAGCTGCC
GTCGGGCTTTATGGCTTCCTTTGATTCTTGGCAGATCTCAACCCTGTCCA
TCGTAAAGATGATTGTAAAATCCTTTGTAAATCTGGATGAGCTGCTGCAG
AAGCAGAAGAACAGCTTTTCCGGAAAAGATGGGGCTCCCATTAACCAAAG
CAATAGCATCTCTCTAAGAAGTTTTATAGATAGCAACGATAGCAGCGGCT
TGGCACAGAAGTACCTGGGAATGACCACTGGACATGGACCCAGTGCCTTT
AGTACACCTAATAACCAAATACGTAATAATGCAGCCTCAAAAGGCCAAGA
ACCCACTTCATCTGCACTTTACAAACCGAAATGTGCATTAAATCTAAACT
ATCTGTACACCATGATAGAGGATTCGGAGGAAACCCAACGCCATGTAGAT
GCCAATGGTACTTATCTGAAAACCGGAACGTATCAACCACTGCAAAAGGA
GTCGATGCAACTGGAGATGCCGCCAGCCAAGCCAAATGACCATTATGTGG
AGCGGAATGCTAACCAACAGGCTTTGCCATCTCAAGAGATTCCTAACGCT
CCAACTCCGAAATCATCTCCACAGTCGGATCGTCCGCGAGATGTGAGGTC
GTACACGAATCCATTTAGCGCGATCGGAAAAGAGGTTACCCGGCAGCTGT
ACGAGTTCAGTGACCGTGTCATGGAGCTAAAAAACTTGGAGCGCTTCTTT
AAGAAGCAGTTCACTCGCAACTATTATCCAAATTTCTATCAGCATTGCCA
GGATGATTTTATAGACGTGCGTGCCATTATTTTGCGGTGCGAGAATTCCT
CATACCATCACATTTATCAGGCTATCCATGATCTGCGCCGGATCATCTTT
ACGGTGCGCTGTTATCTGCAGGTCAAGGAATAATGTATCCAATCCAAGAT
GTACACGGACGAGAACCTCCTCTACTACATTGATCTCTACGAGCGCTCTG
TGAACGACATGCTTTCCAAGCCGCCACATTATCCCAACCAGTTTGATCAC
ATCATGGGCAGGCCAGGCGAAAAGCTCTTCAACTATGAAATCTAAGTGAA
AAAGTATTGACGGTTGAGATTATCAACTGAAATTTAAACGATTTATGCCA
CTTATTTAGCATTTACACGCGTGGGTTGAGTAGATTCATTAATTTTCGAA
ATCAGTGAATTGAGGCAAATTTTGACAAATCCATGCTTTAATGTTAATTG
ACATTAAATCAGATTCATTAATACCATAACTCCCGTTCTTTGGTCGCAAC
ATTTATTCAGCATGTAATTAATACAGGTCTTATATTTTATAATGTAGTAT
TTATAACATAACGTTTTGTTTTTTGTACACATTGAACGGATTCAACTGCT
TTGTTAAATTCACTAAAAAAAAAAAAAAAAAAAAAAAAA

LD44821.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7795-RC 2540 CG7795-RC 27..2540 1..2514 12570 100 Plus
CG7795.a 2116 CG7795.a 27..2074 1..2048 10240 100 Plus
CG7795-RD 2620 CG7795-RD 60..2080 1..2021 10105 100 Plus
CG7795-RD 2620 CG7795-RD 2079..2553 2047..2521 2360 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8316767..8317891 1874..750 5610 99.9 Minus
chr2L 23010047 chr2L 8318309..8318824 516..1 2565 99.8 Minus
chr2L 23010047 chr2L 8315819..8316286 2514..2047 2340 100 Minus
chr2L 23010047 chr2L 8318006..8318242 751..515 1185 100 Minus
chr2L 23010047 chr2L 8316562..8316710 2023..1875 745 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8317837..8318961 1874..750 5625 100 Minus
2L 23513712 2L 8319379..8319894 516..1 2580 100 Minus
2L 23513712 2L 8316882..8317356 2521..2047 2360 99.8 Minus
2L 23513712 2L 8319076..8319312 751..515 1185 100 Minus
2L 23513712 2L 8317632..8317780 2023..1875 745 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8317837..8318961 1874..750 5625 100 Minus
2L 23513712 2L 8319379..8319894 516..1 2580 100 Minus
2L 23513712 2L 8316882..8317356 2521..2047 2360 99.7 Minus
2L 23513712 2L 8319076..8319312 751..515 1185 100 Minus
2L 23513712 2L 8317632..8317780 2023..1875 745 100 Minus
2L 23513712 2L 8317524..8317552 2048..2020 145 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:56:34 has no hits.

LD44821.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:57:24 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8315819..8316284 2049..2514 100 <- Minus
chr2L 8316454..8316480 2022..2048 100 <- Minus
chr2L 8316564..8316710 1875..2021 100 <- Minus
chr2L 8316767..8317889 752..1874 99 <- Minus
chr2L 8318006..8318240 517..751 100 <- Minus
chr2L 8318309..8318824 1..516 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:03 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
CG7795-RB 1..1659 219..1877 99 == Plus
CG7795-RB 1660..1797 1896..2033 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:01 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
mtsh-RC 1..1815 219..2033 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:14:03 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
mtsh-RC 1..1815 219..2033 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:09 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
CG7795-RB 1660..1797 1896..2033 100   Plus
CG7795-RB 1..1659 219..1877 99 == Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:12:09 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
mtsh-RC 1..1815 219..2033 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:50 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
CG7795-RA 2028..2495 2047..2514 100   Plus
CG7795-RA 27..1903 1..1877 99 == Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:01 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
mtsh-RC 1..2514 1..2514 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:03 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
mtsh-RC 15..2528 1..2514 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:09 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
CG7795-RA 27..1903 1..1877 99 == Plus
CG7795-RA 2028..2495 2047..2514 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:12:09 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
mtsh-RC 15..2528 1..2514 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:24 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8316889..8317354 2049..2514 100 <- Minus
2L 8317524..8317550 2022..2048 100 <- Minus
2L 8317634..8317780 1875..2021 100 <- Minus
2L 8317837..8318959 752..1874 100 <- Minus
2L 8319076..8319310 517..751 100 <- Minus
2L 8319379..8319894 1..516 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:24 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8316889..8317354 2049..2514 100 <- Minus
2L 8317524..8317550 2022..2048 100 <- Minus
2L 8317634..8317780 1875..2021 100 <- Minus
2L 8317837..8318959 752..1874 100 <- Minus
2L 8319076..8319310 517..751 100 <- Minus
2L 8319379..8319894 1..516 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:24 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8316889..8317354 2049..2514 100 <- Minus
2L 8317524..8317550 2022..2048 100 <- Minus
2L 8317634..8317780 1875..2021 100 <- Minus
2L 8317837..8318959 752..1874 100 <- Minus
2L 8319076..8319310 517..751 100 <- Minus
2L 8319379..8319894 1..516 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:03 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8319076..8319310 517..751 100 <- Minus
arm_2L 8316889..8317354 2049..2514 100 <- Minus
arm_2L 8317524..8317550 2022..2048 100 <- Minus
arm_2L 8317634..8317780 1875..2021 100 <- Minus
arm_2L 8317837..8318959 752..1874 100 <- Minus
arm_2L 8319379..8319894 1..516 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:35 Download gff for LD44821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8316889..8317354 2049..2514 100 <- Minus
2L 8317524..8317550 2022..2048 100 <- Minus
2L 8317634..8317780 1875..2021 100 <- Minus
2L 8317837..8318959 752..1874 100 <- Minus
2L 8319076..8319310 517..751 100 <- Minus
2L 8319379..8319894 1..516 100   Minus

LD44821.pep Sequence

Translation from 218 to 2032

> LD44821.pep
MNIPIYQVPSVTMQSLHQQSLYQQTYLDRNRMVTDVFVQEHVSQSSWSMA
GSSAVFIPGPIITGSAHGHCHHTATVSTVSPQLATFMPFPGMQYYAASSA
TMNAYGHNQMYSTRASASVGFYLPQYHASCSHEQPKKTFCAAQTQTQQTA
KTSCDVGTQVDLDAEELRSEARKPRPESVVPEESSISSLESGAGDGFRVQ
KKLRNSEVKLLDQRLHDITRVSLHGSEIAERLANAHRNRPCFKKIDTLCA
RLKQDLLRPDGVLPNINSQGIAWAVKDFIFVFTRIVNAWVILKGYVYNTP
DALNKIKDELPSGFMASFDSWQISTLSIVKMIVKSFVNLDELLQKQKNSF
SGKDGAPINQSNSISLRSFIDSNDSSGLAQKYLGMTTGHGPSAFSTPNNQ
IRNNAASKGQEPTSSALYKPKCALNLNYLYTMIEDSEETQRHVDANGTYL
KTGTYQPLQKESMQLEMPPAKPNDHYVERNANQQALPSQEIPNAPTPKSS
PQSDRPRDVRSYTNPFSAIGKEVTRQLYEFSDRVMELKNLERFFKKQFTR
NYYPNFYQHCQDDFIDVRAIILRCENSSYHHIYQAIHDLRRIIFTVRCYL
QVKE*

LD44821.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15264-PA 661 GF15264-PA 1..614 1..602 1986 63.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23455-PA 657 GG23455-PA 1..610 1..602 2595 80.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10176-PA 663 GH10176-PA 6..613 2..596 984 40.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
mtsh-PC 604 CG7795-PC 1..604 1..604 3161 100 Plus
mtsh-PD 649 CG7795-PD 1..602 1..602 3148 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14236-PA 681 GI14236-PA 6..636 2..601 1399 51.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19382-PA 822 GL19382-PA 1..447 1..461 683 39.1 Plus
Dper\GL19382-PA 822 GL19382-PA 675..774 503..602 326 53 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20593-PA 872 GA20593-PA 1..497 1..461 716 39.3 Plus
Dpse\GA20593-PA 872 GA20593-PA 730..824 508..602 331 55.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13056-PA 628 GM13056-PA 1..581 1..602 2704 86.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22420-PA 635 GD22420-PA 1..588 1..602 2820 88.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20536-PA 741 GJ20536-PA 442..692 379..597 513 41.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24232-PA 662 GK24232-PA 4..614 3..601 1679 55.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11052-PA 658 GE11052-PA 1..611 1..602 2532 79.2 Plus

LD44821.hyp Sequence

Translation from 218 to 2032

> LD44821.hyp
MNIPIYQVPSVTMQSLHQQSLYQQTYLDRNRMVTDVFVQEHVSQSSWSMA
GSSAVFIPGPIITGSAHGHCHHTATVSTVSPQLATFMPFPGMQYYAASSA
TMNAYGHNQMYSTRASASVGFYLPQYHASCSHEQPKKTFCAAQTQTQQTA
KTSCDVGTQVDLDAEELRSEARKPRPESVVPEESSISSLESGAGDGFRVQ
KKLRNSEVKLLDQRLHDITRVSLHGSEIAERLANAHRNRPCFKKIDTLCA
RLKQDLLRPDGVLPNINSQGIAWAVKDFIFVFTRIVNAWVILKGYVYNTP
DALNKIKDELPSGFMASFDSWQISTLSIVKMIVKSFVNLDELLQKQKNSF
SGKDGAPINQSNSISLRSFIDSNDSSGLAQKYLGMTTGHGPSAFSTPNNQ
IRNNAASKGQEPTSSALYKPKCALNLNYLYTMIEDSEETQRHVDANGTYL
KTGTYQPLQKESMQLEMPPAKPNDHYVERNANQQALPSQEIPNAPTPKSS
PQSDRPRDVRSYTNPFSAIGKEVTRQLYEFSDRVMELKNLERFFKKQFTR
NYYPNFYQHCQDDFIDVRAIILRCENSSYHHIYQAIHDLRRIIFTVRCYL
QVKE*

LD44821.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
mtsh-PC 604 CG7795-PC 1..604 1..604 3161 100 Plus
mtsh-PD 649 CG7795-PD 1..602 1..602 3148 99.8 Plus