BDGP Sequence Production Resources |
Search the DGRC for LD44824
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 448 |
Well: | 24 |
Vector: | pOT2 |
Associated Gene/Transcript | vlc-RE |
Protein status: | LD44824.pep: gold |
Preliminary Size: | 2715 |
Sequenced Size: | 2530 |
Gene | Date | Evidence |
---|---|---|
CG8390 | 2001-01-01 | Release 2 assignment |
CG8390 | 2001-10-10 | Blastp of sequenced clone |
CG8390 | 2003-01-01 | Sim4 clustering to Release 3 |
vlc | 2008-04-29 | Release 5.5 accounting |
vlc | 2008-08-15 | Release 5.9 accounting |
vlc | 2008-12-18 | 5.12 accounting |
2530 bp (2530 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061484
> LD44824.complete TCATGGCAACACAACCGCTGTTCACCGATCAGTTTTTATTGGTTTTCAGG AATAAGTAAATTGGATTATTGAAGGCTTCACTTGGCACGTATTAGCTTGG ATTTCTATACGCTCAAGCTGCGCAGTCTTCACGTTGTGTTATGAGACCAA AATAGATCGAAGCTCAGTTTTCATGGATCGCAGTCTGGACTCTATTGGCA GCTGTTCACTGGATGTAGACGCCGACTCCTCCGATATATCAGATACCAGT GGGAGCCTGAACTTTCCAACGCCGGTCTCAGTAAGGGACATAACACGCGA ATTTACTGCCAACCTTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGC CTCAGCACAAAACCCCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAG CACATGGTGCTGTCACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTC CAATGATTTTGACGAGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAA AGAAGCCCAGCTATTTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAAC CTTACCACCTACGACTCCAAGATTCGGCAGGACATAAACAAGTCACGTGA GGTTTCCCCGATTCGTCCCTCCACCAGCAGTCTACAGTACTGCAAACGCA ACCACTTTCTAGCGACACCAACTCTGCACAGCATGCCTTCTCCGGCCACC AAGTGCAAACCCATCGAGCCTAACAACAACAGCAACGACAGTAGCGGGAA TTTTAGTTCGGGTTCTGGTCACAGCAATGGAAATGGCAGTTTTATCAAGC AACGGGTGGAGCGACTTTACGGGCCGGGTGCATTAGCCCAGGGTTTCTAC AGCCCCAAAAAGCACGGCCAGTCACCATCGAATGCTGCAGGGCGATCGGA AAGGGGGCAGGTGGAGATCGACTCTCTACAAGGCTCCGAACTGGCTCGGA AATTCAAGCAGCTCTCCCCCAGTAAAGACTATGGGGAGTTTCGAAAAAAA ATGCAGAAGAAGTGTTCTCAGAGTACAACGGCGAGGATAGACGAGCCGTT GCATTCTCCAGGGCTTAACGGAGATCTTGACCTGCCCGTGTTTAGGCACC TTAGTCAAGAGTTCCGCGCCCAGTTGCCTACTGTGTCACCAAAAAGGGGT GCTCCTCGATCTTGCATGGCTCCTGATGTACTGCTTGTAGATAACGAGTC AAGTCCAGACCATGGTCCCACAGATGAAGTAGACCACGAATCCACAAAAA TGGACAAACTAGCCTCAGAGGAATACATCAGCACTTCCAATATTTCTGTT GAAGCTGTTGTTAAGGATGGAAATTTCTTTCTGAAAATACTAAAAGAGGA ACAAAGCCGTCTCTTGGTGCTAGCCGCTCTTGCTGAAAAATATGCAGACG CCTTGTCTACAAATCCAGATATCTCCGAAGATACCTTTGGGCTACTGCGA TCAGCGTCGGGTAAGGCCCGTCTCTTGGTATCGCAGAAAATGAAACAATT CGAGGGTCTTTGCCACAATAATCTGAATCGCTCACCAGAGGATAAGTTTC CAACAACTCTGGATGATTTACAAGGATTCTGGGATATGGTTTATTTGCAG GTGGAGCACGTGGATTCTATTTTTGCTGATATAGAGAAACTCAAAAGTAA CGACTGGAAGGTAAAAGCACAGTCCGTCGCTGACCAACCCGATTTGCACA CCATACCAACTAAGACAATAAAGCCGTCAAAAGTCGGTGTTTCGCAAGTG AAAACAGTCGGAAAGGCATCCAGCGTTCGTGTGAATGGCTCGGCACCTCC CCCACCTAACTCGGCAGCAGCTTTAAAGAGGGAGGCCCAGAGAAAACTGC TTCTAGAGATGAAACGTCAGCGTCGCGAGGCTATGACCGCAGCGGCCAAA TTGAATCCCATAAATGTTGATGCCGACCCGGACGTGCCGGGAATAATTGG CGATAGTTGTGCTAATCCTAGCGTTAGCAACGGAAGTTAAATAATGCTCA CTGCGAATAGCAACTCATGCTTTCTATTTATACATATATTTTTAACTAAC ACACGTGTACCCCACAAAGGCATACTTAAATTTATAGATATTTCTAGTTG AATTAATCATTTACTAGTCCCAACTAAAATTATTGTGTTGGAGCTCCTCA CTGAAATCTGTCACAAGGCGTCAAATATCTAGGAGATAACGAAGTATTGT CACCAATTGCGACTTACCTAAAGTTGTTCATAAATATTGCCTTATCCGCG AAAGATTTCGCTAATTAATCAATTTGCTGTGCACATTATGTAATTGAAAA TTAAAATTACTTGATTACATATAAAAAAGACATTTATTCACGTTTTACAT TATTTAAGTATTTTAAAAACCAACAAAATTTTTGTATAACATAATTTGAT GTTTTATAATTATTTTTGAGAAATTTAACTTATACAACTCTTGGAATATC ATTTCTATTAATAGGCAAAATATTTTTATACAACTGCAAATAAAAATAAC TCACACATTTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vlc-RA | 2538 | vlc-RA | 29..2538 | 1..2510 | 12550 | 100 | Plus |
vlc-RE | 2631 | vlc-RE | 282..2631 | 161..2510 | 11750 | 100 | Plus |
vlc.h | 2470 | vlc.h | 623..2470 | 663..2510 | 9240 | 100 | Plus |
vlc.h | 2470 | vlc.h | 27..622 | 1..596 | 2980 | 100 | Plus |
vlc-RE | 2631 | vlc-RE | 27..188 | 1..162 | 810 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 1590421..1591589 | 240..1408 | 5845 | 100 | Plus |
chr2R | 21145070 | chr2R | 1591807..1592812 | 1505..2510 | 5015 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 1589506..1589667 | 1..162 | 810 | 100 | Plus |
chr2R | 21145070 | chr2R | 1591659..1591757 | 1409..1507 | 495 | 100 | Plus |
chr2R | 21145070 | chr2R | 1590240..1590320 | 162..242 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 5703048..5704216 | 240..1408 | 5845 | 100 | Plus |
2R | 25286936 | 2R | 5704434..5705452 | 1505..2523 | 5065 | 99.8 | Plus |
2R | 25286936 | 2R | 5702133..5702294 | 1..162 | 810 | 100 | Plus |
2R | 25286936 | 2R | 5704286..5704384 | 1409..1507 | 495 | 100 | Plus |
2R | 25286936 | 2R | 5702867..5702947 | 162..242 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 5704247..5705415 | 240..1408 | 5845 | 100 | Plus |
2R | 25260384 | 2R | 5705633..5706651 | 1505..2523 | 5065 | 99.8 | Plus |
2R | 25260384 | 2R | 5703332..5703493 | 1..162 | 810 | 100 | Plus |
2R | 25260384 | 2R | 5705485..5705583 | 1409..1507 | 495 | 100 | Plus |
2R | 25260384 | 2R | 5704066..5704146 | 162..242 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3831..3967 | 2283..2422 | 143 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5601..5673 | 673..745 | 122 | 63 | Plus |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 303..403 | 2387..2289 | 122 | 59.4 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1854..1960 | 1381..1275 | 120 | 60.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2420 | 629..750 | 118 | 62.9 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1289..1338 | 2417..2367 | 117 | 72.5 | Minus |
Tabor | 7345 | Tabor TABOR 7345bp | 6718..6823 | 2295..2397 | 116 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6928 | 622..762 | 115 | 61.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 1589506..1589666 | 1..161 | 100 | -> | Plus |
chr2R | 1590240..1590320 | 162..242 | 100 | -> | Plus |
chr2R | 1590424..1591589 | 243..1408 | 100 | -> | Plus |
chr2R | 1591659..1591755 | 1409..1505 | 100 | -> | Plus |
chr2R | 1591808..1592812 | 1506..2510 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RD | 73..1905 | 156..1990 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RD | 73..1905 | 156..1990 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RG | 1..1818 | 173..1990 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RD | 73..1905 | 156..1990 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RG | 1..1818 | 173..1990 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RA | 27..2536 | 1..2510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RA | 27..2536 | 1..2510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RA | 22..2531 | 1..2510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RA | 27..2536 | 1..2510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RA | 22..2531 | 1..2510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5702133..5702293 | 1..161 | 100 | -> | Plus |
2R | 5702867..5702947 | 162..242 | 100 | -> | Plus |
2R | 5703051..5704216 | 243..1408 | 100 | -> | Plus |
2R | 5704286..5704382 | 1409..1505 | 100 | -> | Plus |
2R | 5704435..5705439 | 1506..2510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5702133..5702293 | 1..161 | 100 | -> | Plus |
2R | 5702867..5702947 | 162..242 | 100 | -> | Plus |
2R | 5703051..5704216 | 243..1408 | 100 | -> | Plus |
2R | 5704286..5704382 | 1409..1505 | 100 | -> | Plus |
2R | 5704435..5705439 | 1506..2510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5702133..5702293 | 1..161 | 100 | -> | Plus |
2R | 5702867..5702947 | 162..242 | 100 | -> | Plus |
2R | 5703051..5704216 | 243..1408 | 100 | -> | Plus |
2R | 5704286..5704382 | 1409..1505 | 100 | -> | Plus |
2R | 5704435..5705439 | 1506..2510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 1589638..1589798 | 1..161 | 100 | -> | Plus |
arm_2R | 1590372..1590452 | 162..242 | 100 | -> | Plus |
arm_2R | 1590556..1591721 | 243..1408 | 100 | -> | Plus |
arm_2R | 1591791..1591887 | 1409..1505 | 100 | -> | Plus |
arm_2R | 1591940..1592944 | 1506..2510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5704250..5705415 | 243..1408 | 100 | -> | Plus |
2R | 5705485..5705581 | 1409..1505 | 100 | -> | Plus |
2R | 5705634..5706638 | 1506..2510 | 100 | Plus | |
2R | 5703332..5703492 | 1..161 | 100 | -> | Plus |
2R | 5704066..5704146 | 162..242 | 100 | -> | Plus |
Translation from 172 to 1989
> LD44824.pep MDRSLDSIGSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRE RCVPNLPPQPQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETS AENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSREVSPIRPS TSSLQYCKRNHFLATPTLHSMPSPATKCKPIEPNNNSNDSSGNFSSGSGH SNGNGSFIKQRVERLYGPGALAQGFYSPKKHGQSPSNAAGRSERGQVEID SLQGSELARKFKQLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSPGLNG DLDLPVFRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLVDNESSPDHGPT DEVDHESTKMDKLASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVL AALAEKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNN LNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLKSNDWKVKAQ SVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAA LKREAQRKLLLEMKRQRREAMTAAAKLNPINVDADPDVPGIIGDSCANPS VSNGS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11028-PA | 521 | GF11028-PA | 1..516 | 1..498 | 1606 | 66.9 | Plus |
Dana\GF13697-PA | 959 | GF13697-PA | 600..730 | 374..495 | 171 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23178-PA | 582 | GG23178-PA | 1..582 | 1..605 | 2634 | 85.3 | Plus |
Dere\GG19263-PA | 169 | GG19263-PA | 1..162 | 360..535 | 390 | 50.3 | Plus |
Dere\GG20384-PA | 909 | GG20384-PA | 547..684 | 363..495 | 184 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21456-PA | 647 | GH21456-PA | 1..636 | 1..604 | 1692 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vlc-PI | 605 | CG8390-PI | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PH | 605 | CG8390-PH | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PG | 605 | CG8390-PG | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PF | 605 | CG8390-PF | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PE | 605 | CG8390-PE | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PC | 605 | CG8390-PC | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PA | 605 | CG8390-PA | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PB | 583 | CG8390-PB | 1..583 | 1..605 | 2975 | 96.2 | Plus |
mars-PD | 921 | CG17064-PD | 557..704 | 363..506 | 170 | 32.1 | Plus |
mars-PC | 921 | CG17064-PC | 557..704 | 363..506 | 170 | 32.1 | Plus |
mars-PB | 921 | CG17064-PB | 557..704 | 363..506 | 170 | 32.1 | Plus |
mars-PA | 921 | CG17064-PA | 557..704 | 363..506 | 170 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19933-PA | 628 | GI19933-PA | 1..596 | 1..571 | 1391 | 50.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17527-PA | 628 | GL17527-PA | 1..628 | 1..605 | 1759 | 60.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21040-PA | 628 | GA21040-PA | 1..628 | 1..605 | 1760 | 61.1 | Plus |
Dpse\GA21040-PB | 597 | GA21040-PB | 1..597 | 1..605 | 1594 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16518-PA | 586 | GM16518-PA | 1..586 | 1..605 | 2711 | 91.6 | Plus |
Dsec\GM21472-PA | 929 | GM21472-PA | 564..712 | 368..506 | 183 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10382-PA | 1053 | GD10382-PA | 469..1053 | 1..605 | 2708 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\vlc-PA | 632 | GJ15100-PA | 1..611 | 1..576 | 1637 | 56.9 | Plus |
Dvir\GJ19758-PA | 636 | GJ19758-PA | 328..425 | 424..522 | 159 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\vlc-PA | 624 | GK10764-PA | 1..613 | 1..595 | 1735 | 59.1 | Plus |
Dwil\GK15960-PA | 957 | GK15960-PA | 579..739 | 374..534 | 187 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20549-PA | 620 | GE20549-PA | 41..620 | 1..605 | 2591 | 84.1 | Plus |
Dyak\GE15882-PA | 124 | GE15882-PA | 11..124 | 383..496 | 390 | 66.7 | Plus |
Dyak\GE12546-PA | 923 | GE12546-PA | 566..708 | 372..506 | 178 | 34 | Plus |
Translation from 172 to 1989
> LD44824.hyp MDRSLDSIGSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRE RCVPNLPPQPQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETS AENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSREVSPIRPS TSSLQYCKRNHFLATPTLHSMPSPATKCKPIEPNNNSNDSSGNFSSGSGH SNGNGSFIKQRVERLYGPGALAQGFYSPKKHGQSPSNAAGRSERGQVEID SLQGSELARKFKQLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSPGLNG DLDLPVFRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLVDNESSPDHGPT DEVDHESTKMDKLASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVL AALAEKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNN LNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLKSNDWKVKAQ SVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAA LKREAQRKLLLEMKRQRREAMTAAAKLNPINVDADPDVPGIIGDSCANPS VSNGS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vlc-PI | 605 | CG8390-PI | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PH | 605 | CG8390-PH | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PG | 605 | CG8390-PG | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PF | 605 | CG8390-PF | 1..605 | 1..605 | 3130 | 100 | Plus |
vlc-PE | 605 | CG8390-PE | 1..605 | 1..605 | 3130 | 100 | Plus |