Clone LD44824 Report

Search the DGRC for LD44824

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:448
Well:24
Vector:pOT2
Associated Gene/Transcriptvlc-RE
Protein status:LD44824.pep: gold
Preliminary Size:2715
Sequenced Size:2530

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8390 2001-01-01 Release 2 assignment
CG8390 2001-10-10 Blastp of sequenced clone
CG8390 2003-01-01 Sim4 clustering to Release 3
vlc 2008-04-29 Release 5.5 accounting
vlc 2008-08-15 Release 5.9 accounting
vlc 2008-12-18 5.12 accounting

Clone Sequence Records

LD44824.complete Sequence

2530 bp (2530 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061484

> LD44824.complete
TCATGGCAACACAACCGCTGTTCACCGATCAGTTTTTATTGGTTTTCAGG
AATAAGTAAATTGGATTATTGAAGGCTTCACTTGGCACGTATTAGCTTGG
ATTTCTATACGCTCAAGCTGCGCAGTCTTCACGTTGTGTTATGAGACCAA
AATAGATCGAAGCTCAGTTTTCATGGATCGCAGTCTGGACTCTATTGGCA
GCTGTTCACTGGATGTAGACGCCGACTCCTCCGATATATCAGATACCAGT
GGGAGCCTGAACTTTCCAACGCCGGTCTCAGTAAGGGACATAACACGCGA
ATTTACTGCCAACCTTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGC
CTCAGCACAAAACCCCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAG
CACATGGTGCTGTCACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTC
CAATGATTTTGACGAGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAA
AGAAGCCCAGCTATTTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAAC
CTTACCACCTACGACTCCAAGATTCGGCAGGACATAAACAAGTCACGTGA
GGTTTCCCCGATTCGTCCCTCCACCAGCAGTCTACAGTACTGCAAACGCA
ACCACTTTCTAGCGACACCAACTCTGCACAGCATGCCTTCTCCGGCCACC
AAGTGCAAACCCATCGAGCCTAACAACAACAGCAACGACAGTAGCGGGAA
TTTTAGTTCGGGTTCTGGTCACAGCAATGGAAATGGCAGTTTTATCAAGC
AACGGGTGGAGCGACTTTACGGGCCGGGTGCATTAGCCCAGGGTTTCTAC
AGCCCCAAAAAGCACGGCCAGTCACCATCGAATGCTGCAGGGCGATCGGA
AAGGGGGCAGGTGGAGATCGACTCTCTACAAGGCTCCGAACTGGCTCGGA
AATTCAAGCAGCTCTCCCCCAGTAAAGACTATGGGGAGTTTCGAAAAAAA
ATGCAGAAGAAGTGTTCTCAGAGTACAACGGCGAGGATAGACGAGCCGTT
GCATTCTCCAGGGCTTAACGGAGATCTTGACCTGCCCGTGTTTAGGCACC
TTAGTCAAGAGTTCCGCGCCCAGTTGCCTACTGTGTCACCAAAAAGGGGT
GCTCCTCGATCTTGCATGGCTCCTGATGTACTGCTTGTAGATAACGAGTC
AAGTCCAGACCATGGTCCCACAGATGAAGTAGACCACGAATCCACAAAAA
TGGACAAACTAGCCTCAGAGGAATACATCAGCACTTCCAATATTTCTGTT
GAAGCTGTTGTTAAGGATGGAAATTTCTTTCTGAAAATACTAAAAGAGGA
ACAAAGCCGTCTCTTGGTGCTAGCCGCTCTTGCTGAAAAATATGCAGACG
CCTTGTCTACAAATCCAGATATCTCCGAAGATACCTTTGGGCTACTGCGA
TCAGCGTCGGGTAAGGCCCGTCTCTTGGTATCGCAGAAAATGAAACAATT
CGAGGGTCTTTGCCACAATAATCTGAATCGCTCACCAGAGGATAAGTTTC
CAACAACTCTGGATGATTTACAAGGATTCTGGGATATGGTTTATTTGCAG
GTGGAGCACGTGGATTCTATTTTTGCTGATATAGAGAAACTCAAAAGTAA
CGACTGGAAGGTAAAAGCACAGTCCGTCGCTGACCAACCCGATTTGCACA
CCATACCAACTAAGACAATAAAGCCGTCAAAAGTCGGTGTTTCGCAAGTG
AAAACAGTCGGAAAGGCATCCAGCGTTCGTGTGAATGGCTCGGCACCTCC
CCCACCTAACTCGGCAGCAGCTTTAAAGAGGGAGGCCCAGAGAAAACTGC
TTCTAGAGATGAAACGTCAGCGTCGCGAGGCTATGACCGCAGCGGCCAAA
TTGAATCCCATAAATGTTGATGCCGACCCGGACGTGCCGGGAATAATTGG
CGATAGTTGTGCTAATCCTAGCGTTAGCAACGGAAGTTAAATAATGCTCA
CTGCGAATAGCAACTCATGCTTTCTATTTATACATATATTTTTAACTAAC
ACACGTGTACCCCACAAAGGCATACTTAAATTTATAGATATTTCTAGTTG
AATTAATCATTTACTAGTCCCAACTAAAATTATTGTGTTGGAGCTCCTCA
CTGAAATCTGTCACAAGGCGTCAAATATCTAGGAGATAACGAAGTATTGT
CACCAATTGCGACTTACCTAAAGTTGTTCATAAATATTGCCTTATCCGCG
AAAGATTTCGCTAATTAATCAATTTGCTGTGCACATTATGTAATTGAAAA
TTAAAATTACTTGATTACATATAAAAAAGACATTTATTCACGTTTTACAT
TATTTAAGTATTTTAAAAACCAACAAAATTTTTGTATAACATAATTTGAT
GTTTTATAATTATTTTTGAGAAATTTAACTTATACAACTCTTGGAATATC
ATTTCTATTAATAGGCAAAATATTTTTATACAACTGCAAATAAAAATAAC
TCACACATTTAAAAAAAAAAAAAAAAAAAA

LD44824.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
vlc-RA 2538 vlc-RA 29..2538 1..2510 12550 100 Plus
vlc-RE 2631 vlc-RE 282..2631 161..2510 11750 100 Plus
vlc.h 2470 vlc.h 623..2470 663..2510 9240 100 Plus
vlc.h 2470 vlc.h 27..622 1..596 2980 100 Plus
vlc-RE 2631 vlc-RE 27..188 1..162 810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1590421..1591589 240..1408 5845 100 Plus
chr2R 21145070 chr2R 1591807..1592812 1505..2510 5015 99.9 Plus
chr2R 21145070 chr2R 1589506..1589667 1..162 810 100 Plus
chr2R 21145070 chr2R 1591659..1591757 1409..1507 495 100 Plus
chr2R 21145070 chr2R 1590240..1590320 162..242 405 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5703048..5704216 240..1408 5845 100 Plus
2R 25286936 2R 5704434..5705452 1505..2523 5065 99.8 Plus
2R 25286936 2R 5702133..5702294 1..162 810 100 Plus
2R 25286936 2R 5704286..5704384 1409..1507 495 100 Plus
2R 25286936 2R 5702867..5702947 162..242 405 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5704247..5705415 240..1408 5845 100 Plus
2R 25260384 2R 5705633..5706651 1505..2523 5065 99.8 Plus
2R 25260384 2R 5703332..5703493 1..162 810 100 Plus
2R 25260384 2R 5705485..5705583 1409..1507 495 100 Plus
2R 25260384 2R 5704066..5704146 162..242 405 100 Plus
Blast to na_te.dros performed 2019-03-16 20:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3831..3967 2283..2422 143 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5601..5673 673..745 122 63 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 303..403 2387..2289 122 59.4 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1854..1960 1381..1275 120 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2420 629..750 118 62.9 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1289..1338 2417..2367 117 72.5 Minus
Tabor 7345 Tabor TABOR 7345bp 6718..6823 2295..2397 116 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6928 622..762 115 61.8 Plus

LD44824.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:43:53 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1589506..1589666 1..161 100 -> Plus
chr2R 1590240..1590320 162..242 100 -> Plus
chr2R 1590424..1591589 243..1408 100 -> Plus
chr2R 1591659..1591755 1409..1505 100 -> Plus
chr2R 1591808..1592812 1506..2510 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:05 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RD 73..1905 156..1990 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:12 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RD 73..1905 156..1990 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:00 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RG 1..1818 173..1990 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:09 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RD 73..1905 156..1990 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:56 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RG 1..1818 173..1990 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:11 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RA 27..2536 1..2510 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:11 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RA 27..2536 1..2510 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:00 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RA 22..2531 1..2510 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:09 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RA 27..2536 1..2510 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:56 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RA 22..2531 1..2510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:53 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5702133..5702293 1..161 100 -> Plus
2R 5702867..5702947 162..242 100 -> Plus
2R 5703051..5704216 243..1408 100 -> Plus
2R 5704286..5704382 1409..1505 100 -> Plus
2R 5704435..5705439 1506..2510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:53 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5702133..5702293 1..161 100 -> Plus
2R 5702867..5702947 162..242 100 -> Plus
2R 5703051..5704216 243..1408 100 -> Plus
2R 5704286..5704382 1409..1505 100 -> Plus
2R 5704435..5705439 1506..2510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:53 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5702133..5702293 1..161 100 -> Plus
2R 5702867..5702947 162..242 100 -> Plus
2R 5703051..5704216 243..1408 100 -> Plus
2R 5704286..5704382 1409..1505 100 -> Plus
2R 5704435..5705439 1506..2510 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:00 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1589638..1589798 1..161 100 -> Plus
arm_2R 1590372..1590452 162..242 100 -> Plus
arm_2R 1590556..1591721 243..1408 100 -> Plus
arm_2R 1591791..1591887 1409..1505 100 -> Plus
arm_2R 1591940..1592944 1506..2510 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:16 Download gff for LD44824.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5704250..5705415 243..1408 100 -> Plus
2R 5705485..5705581 1409..1505 100 -> Plus
2R 5705634..5706638 1506..2510 100   Plus
2R 5703332..5703492 1..161 100 -> Plus
2R 5704066..5704146 162..242 100 -> Plus

LD44824.pep Sequence

Translation from 172 to 1989

> LD44824.pep
MDRSLDSIGSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRE
RCVPNLPPQPQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETS
AENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSREVSPIRPS
TSSLQYCKRNHFLATPTLHSMPSPATKCKPIEPNNNSNDSSGNFSSGSGH
SNGNGSFIKQRVERLYGPGALAQGFYSPKKHGQSPSNAAGRSERGQVEID
SLQGSELARKFKQLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSPGLNG
DLDLPVFRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLVDNESSPDHGPT
DEVDHESTKMDKLASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVL
AALAEKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNN
LNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLKSNDWKVKAQ
SVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAA
LKREAQRKLLLEMKRQRREAMTAAAKLNPINVDADPDVPGIIGDSCANPS
VSNGS*

LD44824.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11028-PA 521 GF11028-PA 1..516 1..498 1606 66.9 Plus
Dana\GF13697-PA 959 GF13697-PA 600..730 374..495 171 33.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23178-PA 582 GG23178-PA 1..582 1..605 2634 85.3 Plus
Dere\GG19263-PA 169 GG19263-PA 1..162 360..535 390 50.3 Plus
Dere\GG20384-PA 909 GG20384-PA 547..684 363..495 184 34.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21456-PA 647 GH21456-PA 1..636 1..604 1692 57 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
vlc-PI 605 CG8390-PI 1..605 1..605 3130 100 Plus
vlc-PH 605 CG8390-PH 1..605 1..605 3130 100 Plus
vlc-PG 605 CG8390-PG 1..605 1..605 3130 100 Plus
vlc-PF 605 CG8390-PF 1..605 1..605 3130 100 Plus
vlc-PE 605 CG8390-PE 1..605 1..605 3130 100 Plus
vlc-PC 605 CG8390-PC 1..605 1..605 3130 100 Plus
vlc-PA 605 CG8390-PA 1..605 1..605 3130 100 Plus
vlc-PB 583 CG8390-PB 1..583 1..605 2975 96.2 Plus
mars-PD 921 CG17064-PD 557..704 363..506 170 32.1 Plus
mars-PC 921 CG17064-PC 557..704 363..506 170 32.1 Plus
mars-PB 921 CG17064-PB 557..704 363..506 170 32.1 Plus
mars-PA 921 CG17064-PA 557..704 363..506 170 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19933-PA 628 GI19933-PA 1..596 1..571 1391 50.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17527-PA 628 GL17527-PA 1..628 1..605 1759 60.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21040-PA 628 GA21040-PA 1..628 1..605 1760 61.1 Plus
Dpse\GA21040-PB 597 GA21040-PB 1..597 1..605 1594 57.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16518-PA 586 GM16518-PA 1..586 1..605 2711 91.6 Plus
Dsec\GM21472-PA 929 GM21472-PA 564..712 368..506 183 34 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10382-PA 1053 GD10382-PA 469..1053 1..605 2708 91.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\vlc-PA 632 GJ15100-PA 1..611 1..576 1637 56.9 Plus
Dvir\GJ19758-PA 636 GJ19758-PA 328..425 424..522 159 37.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\vlc-PA 624 GK10764-PA 1..613 1..595 1735 59.1 Plus
Dwil\GK15960-PA 957 GK15960-PA 579..739 374..534 187 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20549-PA 620 GE20549-PA 41..620 1..605 2591 84.1 Plus
Dyak\GE15882-PA 124 GE15882-PA 11..124 383..496 390 66.7 Plus
Dyak\GE12546-PA 923 GE12546-PA 566..708 372..506 178 34 Plus

LD44824.hyp Sequence

Translation from 172 to 1989

> LD44824.hyp
MDRSLDSIGSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRE
RCVPNLPPQPQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETS
AENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSREVSPIRPS
TSSLQYCKRNHFLATPTLHSMPSPATKCKPIEPNNNSNDSSGNFSSGSGH
SNGNGSFIKQRVERLYGPGALAQGFYSPKKHGQSPSNAAGRSERGQVEID
SLQGSELARKFKQLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSPGLNG
DLDLPVFRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLVDNESSPDHGPT
DEVDHESTKMDKLASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVL
AALAEKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNN
LNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLKSNDWKVKAQ
SVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAA
LKREAQRKLLLEMKRQRREAMTAAAKLNPINVDADPDVPGIIGDSCANPS
VSNGS*

LD44824.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
vlc-PI 605 CG8390-PI 1..605 1..605 3130 100 Plus
vlc-PH 605 CG8390-PH 1..605 1..605 3130 100 Plus
vlc-PG 605 CG8390-PG 1..605 1..605 3130 100 Plus
vlc-PF 605 CG8390-PF 1..605 1..605 3130 100 Plus
vlc-PE 605 CG8390-PE 1..605 1..605 3130 100 Plus