Clone LD44850 Report

Search the DGRC for LD44850

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:448
Well:50
Vector:pOT2
Associated Gene/TranscriptArp2-RC
Protein status:LD44850.pep: gold
Sequenced Size:1980

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Arp14D 2010-12-02 CDS novel splice

Clone Sequence Records

LD44850.complete Sequence

1980 bp assembled on 2011-02-17

GenBank Submission: BT126051.1

> LD44850.complete
TACAATCGCTCTCCGGCGGTCCAAATACAAAAAAAGCCGAAAAGGAATCA
ATTAACAGTAGTGCTCAACAAACGGCCCAGGAAGTCAACAGGAAAGGCGA
TTGATGTGCAATATTTTGTTTGGTTTTATCGAGCAGAGGCGCTGCGAGCT
GTGATTTCAAACCGAATCACAACCAACACCCAAAAAGGCAACCTGGTCGC
GTCATCAGTGGAAGTGGAAAGGCAGTTGCCACAGCAGAGGCAGAAGCAAC
GGGAGTAGCAGAAGCAGTGGTTTTCCAGAGATCCGGTTTTGAGTCCTTCA
AGCATGGACAGCAAGGGTCGAAATGTTATCGTCTGTGATAACGGCACTGG
GTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCCACCCACATTTTTC
CCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAACAAAATCGGCGAT
ATCGAAGTCAAGGATTTACATGTCGATGATCTGATGGTCGGCGATGAGGC
CTCACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTG
TGGTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGT
CCCAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGA
GCCGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGT
TCGAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTG
ACGCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGA
TGGTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATC
TGACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATT
AAGTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGA
AACGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCG
AGATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTAC
ACGCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGC
GCCAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCA
TTGCGGAACTGGCCTTCAACACCATCCAGGCGGCAGACATCGACATACGG
CCCGAACTCTACAAGCACATAGTTCTGTCCGGCGGCTCCACCATGTATCC
GGGTCTTCCCAGTCGGCTGGAGCGTGAGATCAAACAGCTGTACCTGGAGC
GGGTACTCAAGAACGATACGGAAAAGCTGGCGAAATTCAAAATACGCATT
GAGGATCCACCGCGACGCAAGGATATGGTCTTTATCGGCGGAGCTGTTCT
GGCGGAGGTGACAAAGGATCGCGACGGCTTCTGGATGTCCAAGCAGGAGT
ATCAGGAACAGGGTCTCAAAGTATTGCAAAAGCTGCAAAAGATCAGTCAC
TAGAGGCGGATGGATGCGAAATCAGTGTGTGTGTGTGTGCGGACCGCAAG
AAATAGGATAAAAAAGTGATAGATTTCTTTTCTCTATTTTCTATAGGTTT
AAACCTTTCAGATTTACGTGATATATCCGTCTATATATGTTTTTTTTTTT
GTGTGTGCCTGTGCGAGTGGGCGTGTCTGTTGAGCAGGATTGGTCCACTT
GCCCTTAGATTATCTATAATCGCAGACATGTCGTCACTGGTCGTTATCCC
CGTACAATATAATGTAATATTTCTTTGAGCGCGAAAACTTTAATTCGATA
GTCGCCTAAATTGTGTAACCCTGCATTAGTGTGTTTAATTGTTTATAATT
ACGTCTAAAATTCAAACCCAAAAGCCCTTTTCTTTAATGAATACGCATAT
ATAACTATATATATATACATATATAAATTCAAAGCACCTCGAGTGCGGCG
ATATTTTTGTAAAAAAAAAAAAAAAAAAAA

LD44850.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16438508..16439136 1960..1332 3145 100 Minus
chrX 22417052 chrX 16439201..16439631 1332..902 2155 100 Minus
chrX 22417052 chrX 16443065..16443416 351..1 1710 99.7 Minus
chrX 22417052 chrX 16439969..16440188 697..478 1100 100 Minus
chrX 22417052 chrX 16439700..16439911 903..692 1060 100 Minus
chrX 22417052 chrX 16442060..16442172 463..351 565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16548782..16549413 1963..1332 3160 100 Minus
X 23542271 X 16549478..16549908 1332..902 2155 100 Minus
X 23542271 X 16553344..16553694 351..1 1755 100 Minus
X 23542271 X 16550246..16550465 697..478 1100 100 Minus
X 23542271 X 16549977..16550188 903..692 1060 100 Minus
X 23542271 X 16552339..16552451 463..351 565 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16556880..16557511 1963..1332 3160 100 Minus
X 23527363 X 16557576..16558006 1332..902 2155 100 Minus
X 23527363 X 16561442..16561792 351..1 1755 100 Minus
X 23527363 X 16558344..16558563 697..478 1100 100 Minus
X 23527363 X 16558075..16558286 903..692 1060 100 Minus
X 23527363 X 16560437..16560549 463..351 565 100 Minus
Blast to na_te.dros performed 2019-03-17 01:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1037..1099 207..267 129 71.4 Plus
invader6 4885 invader6 INVADER6 4885bp 1215..1270 770..715 127 69.6 Minus

LD44850.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:42:14 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16438508..16439135 1333..1960 100 <- Minus
chrX 16439201..16439629 904..1332 100 <- Minus
chrX 16439700..16439909 694..903 100 <- Minus
chrX 16439973..16440188 478..693 100 <- Minus
chrX 16441196..16441210 463..477 100 <- Minus
chrX 16442061..16442171 352..462 100 <- Minus
chrX 16443065..16443416 1..351 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-17 12:46:44 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
Arp14D-RB 1..153 304..456 100 == Plus
Arp14D-RB 154..1185 472..1503 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:48:56 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
Arp2-RC 1..1200 304..1503 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:07:26 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
Arp2-RC 1..1200 304..1503 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 12:46:42 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
Arp14D-RB 167..486 137..456 100 == Plus
Arp14D-RB 487..1975 472..1960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:48:56 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
Arp2-RC 258..2217 1..1960 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:07:26 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
Arp2-RC 258..2217 1..1960 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:14 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
X 16553344..16553694 1..351 100   Minus
X 16548785..16549412 1333..1960 100 <- Minus
X 16549478..16549906 904..1332 100 <- Minus
X 16549977..16550186 694..903 100 <- Minus
X 16550250..16550465 478..693 100 <- Minus
X 16551475..16551489 463..477 100 <- Minus
X 16552340..16552450 352..462 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:14 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
X 16553344..16553694 1..351 100   Minus
X 16548785..16549412 1333..1960 100 <- Minus
X 16549478..16549906 904..1332 100 <- Minus
X 16549977..16550186 694..903 100 <- Minus
X 16550250..16550465 478..693 100 <- Minus
X 16551475..16551489 463..477 100 <- Minus
X 16552340..16552450 352..462 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:14 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
X 16553344..16553694 1..351 100   Minus
X 16548785..16549412 1333..1960 100 <- Minus
X 16549478..16549906 904..1332 100 <- Minus
X 16549977..16550186 694..903 100 <- Minus
X 16550250..16550465 478..693 100 <- Minus
X 16551475..16551489 463..477 100 <- Minus
X 16552340..16552450 352..462 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:48:56 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16442818..16443445 1333..1960 100 <- Minus
arm_X 16443511..16443939 904..1332 100 <- Minus
arm_X 16444010..16444219 694..903 100 <- Minus
arm_X 16444283..16444498 478..693 100 <- Minus
arm_X 16445508..16445522 463..477 100 <- Minus
arm_X 16446373..16446483 352..462 100 <- Minus
arm_X 16447377..16447727 1..351 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:58:47 Download gff for LD44850.complete
Subject Subject Range Query Range Percent Splice Strand
X 16556883..16557510 1333..1960 100 <- Minus
X 16557576..16558004 904..1332 100 <- Minus
X 16558075..16558284 694..903 100 <- Minus
X 16558348..16558563 478..693 100 <- Minus
X 16559573..16559587 463..477 100 <- Minus
X 16560438..16560548 352..462 100 <- Minus
X 16561442..16561792 1..351 100   Minus

LD44850.hyp Sequence

Translation from 303 to 1502

> LD44850.hyp
MDSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDI
EVKDLHVDDLMVGDEASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGP
KKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAVLT
LYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIK
LLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYT
LPDGRVIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRP
ELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIE
DPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKLQKISH*

LD44850.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-PC 399 CG9901-PC 1..399 1..399 2081 100 Plus
Arp2-PB 394 CG9901-PB 1..394 1..399 2037 98.7 Plus
Arp2-PA 394 CG9901-PA 1..394 1..399 2037 98.7 Plus
Act88F-PA 376 CG5178-PA 9..373 9..393 910 46.8 Plus
Act87E-PC 376 CG18290-PC 9..373 9..393 908 46.2 Plus

LD44850.pep Sequence

Translation from 303 to 1502

> LD44850.pep
MDSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDI
EVKDLHVDDLMVGDEASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGP
KKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAVLT
LYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIK
LLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYT
LPDGRVIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRP
ELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIE
DPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKLQKISH*

LD44850.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20797-PA 394 GF20797-PA 1..393 1..398 2058 97.2 Plus
Dana\GF13827-PA 376 GF13827-PA 8..373 8..393 939 46.1 Plus
Dana\GF18300-PA 376 GF18300-PA 7..373 7..393 937 46.5 Plus
Dana\GF17602-PA 376 GF17602-PA 8..373 8..393 936 46.1 Plus
Dana\GF10940-PA 376 GF10940-PA 7..373 7..393 933 46.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19317-PA 394 GG19317-PA 1..394 1..399 2091 98.7 Plus
Dere\GG18797-PA 376 GG18797-PA 8..373 8..393 939 46.4 Plus
Dere\GG16929-PA 376 GG16929-PA 7..373 7..393 937 46.5 Plus
Dere\GG10840-PA 376 GG10840-PA 8..373 8..393 936 46.1 Plus
Dere\GG19688-PA 376 GG19688-PA 8..373 8..393 936 46.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24891-PA 394 GH24891-PA 1..394 1..399 2060 97.2 Plus
Dgri\GH19077-PA 376 GH19077-PA 7..373 7..393 940 46.5 Plus
Dgri\GH20408-PA 376 GH20408-PA 8..373 8..393 940 46.4 Plus
Dgri\GH24372-PA 376 GH24372-PA 8..373 8..393 939 46.4 Plus
Dgri\GH19045-PA 376 GH19045-PA 8..373 8..393 936 46.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-PC 399 CG9901-PC 1..399 1..399 2081 100 Plus
Arp2-PB 394 CG9901-PB 1..394 1..399 2037 98.7 Plus
Arp2-PA 394 CG9901-PA 1..394 1..399 2037 98.7 Plus
Act88F-PA 376 CG5178-PA 9..373 9..393 910 46.8 Plus
Act87E-PC 376 CG18290-PC 9..373 9..393 908 46.2 Plus
Act87E-PB 376 CG18290-PB 9..373 9..393 908 46.2 Plus
Act87E-PA 376 CG18290-PA 9..373 9..393 908 46.2 Plus
Act5C-PE 376 CG4027-PE 9..373 9..393 907 46.5 Plus
Act5C-PD 376 CG4027-PD 9..373 9..393 907 46.5 Plus
Act5C-PC 376 CG4027-PC 9..373 9..393 907 46.5 Plus
Act5C-PA 376 CG4027-PA 9..373 9..393 907 46.5 Plus
Act5C-PB 376 CG4027-PB 9..373 9..393 907 46.5 Plus
Act57B-PA 376 CG10067-PA 9..373 9..393 906 46 Plus
Act42A-PA 376 CG12051-PA 9..373 9..393 905 46.2 Plus
Act79B-PB 376 CG7478-PB 7..373 7..393 904 46.3 Plus
Act79B-PA 376 CG7478-PA 7..373 7..393 904 46.3 Plus
Arp1-PA 376 CG6174-PA 12..373 9..393 777 41.3 Plus
Arp53D-PB 411 CG5409-PB 49..408 9..393 775 42.3 Plus
Arp3-PB 418 CG7558-PB 9..404 10..387 479 33.3 Plus
Arp3-PA 418 CG7558-PA 9..404 10..387 479 33.3 Plus
Bap55-PA 425 CG6546-PA 16..422 9..393 315 26 Plus
Arp6-PA 398 CG11678-PA 5..393 8..389 300 25.4 Plus
Arp5-PB 648 CG7940-PB 3..245 5..235 194 24.6 Plus
Arp5-PA 648 CG7940-PA 3..245 5..235 194 24.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15155-PA 394 GI15155-PA 1..393 1..398 2053 97 Plus
Dmoj\GI23222-PA 376 GI23222-PA 7..373 7..393 940 46.5 Plus
Dmoj\GI19595-PA 376 GI19595-PA 8..373 8..393 940 46.4 Plus
Dmoj\GI15312-PA 376 GI15312-PA 8..373 8..393 939 46.4 Plus
Dmoj\GI24339-PA 376 GI24339-PA 8..373 8..393 936 46.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19308-PA 408 GL19308-PA 1..388 1..391 1604 73.1 Plus
Dper\GL17787-PA 376 GL17787-PA 8..373 8..393 940 46.4 Plus
Dper\GL14888-PA 376 GL14888-PA 8..373 8..393 939 46.4 Plus
Dper\GL17061-PA 376 GL17061-PA 8..373 8..393 932 45.9 Plus
Dper\GL26327-PA 376 GL26327-PA 8..373 8..393 924 45.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22112-PA 394 GA22112-PA 1..394 1..399 2051 96.7 Plus
Dpse\GA25912-PA 406 GA25912-PA 1..388 1..391 1606 73.1 Plus
Dpse\GA24908-PB 376 GA24908-PB 8..373 8..393 940 46.4 Plus
Dpse\GA24908-PA 376 GA24908-PA 8..373 8..393 940 46.4 Plus
Dpse\GA17886-PA 376 GA17886-PA 8..373 8..393 939 46.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13391-PA 399 GM13391-PA 1..399 1..399 2120 99.5 Plus
Dsec\GM12447-PA 376 GM12447-PA 8..373 8..393 939 46.4 Plus
Dsec\GM16492-PA 376 GM16492-PA 8..373 8..393 936 46.1 Plus
Dsec\GM24109-PA 376 GM24109-PA 8..373 8..393 935 46.1 Plus
Dsec\GM22426-PA 376 GM22426-PA 7..373 7..393 933 46.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15743-PA 400 GD15743-PA 1..400 1..399 1825 88.6 Plus
Dsim\GD16764-PA 376 GD16764-PA 8..373 8..393 939 46.4 Plus
Dsim\Act88F-PA 376 GD19025-PA 7..373 7..393 937 46.5 Plus
Dsim\GD10342-PA 376 GD10342-PA 8..373 8..393 936 46.1 Plus
Dsim\GD18909-PA 376 GD18909-PA 8..373 8..393 936 46.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19344-PA 394 GJ19344-PA 1..394 1..399 2051 96.7 Plus
Dvir\ActE2-PA 376 GJ22881-PA 7..373 7..393 940 46.5 Plus
Dvir\GJ18395-PA 376 GJ18395-PA 8..373 8..393 940 46.4 Plus
Dvir\GJ14747-PA 376 GJ14747-PA 8..373 8..393 939 46.4 Plus
Dvir\ActE1-PA 376 GJ10425-PA 8..373 8..393 936 46.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25245-PA 394 GK25245-PA 1..394 1..399 2047 96.2 Plus
Dwil\GK20124-PA 376 GK20124-PA 8..373 8..393 939 46.4 Plus
Dwil\GK11462-PA 376 GK11462-PA 7..373 7..393 937 46.5 Plus
Dwil\GK21751-PA 376 GK21751-PA 8..373 8..393 936 46.1 Plus
Dwil\GK13943-PA 376 GK13943-PA 8..373 8..393 936 46.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15964-PA 394 GE15964-PA 1..394 1..399 2091 98.7 Plus
Dyak\Act57B-PA 376 GE17558-PA 8..373 8..393 939 46.4 Plus
Dyak\GE24312-PA 376 GE24312-PA 7..373 7..393 937 46.5 Plus
Dyak\GE19434-PA 376 GE19434-PA 8..373 8..393 936 46.1 Plus
Dyak\GE26273-PA 376 GE26273-PA 8..373 8..393 936 46.1 Plus