Clone LD44887 Report

Search the DGRC for LD44887

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:448
Well:87
Vector:pOT2
Associated Gene/Transcriptmus304-RA
Protein status:LD44887.pep: gold
Preliminary Size:2809
Sequenced Size:2818

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7347 2001-01-01 Release 2 assignment
CG7347 2002-05-20 Blastp of sequenced clone
CG7347 2003-01-01 Sim4 clustering to Release 3
mus304 2008-04-29 Release 5.5 accounting
mus304 2008-08-15 Release 5.9 accounting
mus304 2008-12-18 5.12 accounting

Clone Sequence Records

LD44887.complete Sequence

2818 bp (2818 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118585

> LD44887.complete
AAACAAAGCAAACCGGCAAAATAATCTACGACTTTCCATGGCCAAAAAGT
AACGAAATATAGCGGAAACTGGAGGAACCATGGCCAAGCGCTTTTCTGCC
ATGAAAGACTTCGCGCGGTGCAAGAAACCGCGCCTGGATGTTAGCGTTAC
CCGCGGATCAGCGCGACCCAGTCCACCGAGGAACAATTTCGATGGGATTC
TCTGGGACGACGATGACGATGTCATCCTGATGGCCACCCAGCTGGCGGAG
GCGGAAATCGAGGCGGAGGAGCGGAAAAAGAAGGGCGGAACAGAGGTGGA
CATCGGCAACAGCGAGGTCACCTTCAGCGAATTTGCACCCACTTTTCAGG
GCTCAACCAGCACACAGCAAATGTTTCCGCCGCCACCGCCGCCACAAAAG
AAGCCTACTTCCCTGGATATGGATGCGATTTTCGCGGATGATGATGATTT
CGATTTTCTGGCCGTTACCCTCATGGACAGTGAGCCACAAAAGATGCCGG
AGCCGAAGACCAGCACAAGTAGGATAACTACCAGCAGCATAAGTGTTCAG
CAGAAAACCACGACCACGACGACCATCAATGCCACGCAATCCCGCCAGCA
GGAGCATCAGCTAAAGTTTCTCATGGATAGGATTGAAGCCCTTAAGCGGG
AAAACGCGCAGCTGGAAAAGAATTTGGGCGACAGTAAGGAACGCAATGAG
ATCAAGTCTGGTGAGGTTTCCTTACTTCGTGATGAGCTGAAGCACTTGCG
CCAGCAGCTGCAGGCTAGCAAAATGGAAAAGCTGGCTTTGGCCGACGAAA
CGAATCGGGATTGCAACAAAAAAGTGGCAGAAGCGGCCAAACAAATTGCG
GCCAAGGACATCGAGTTGAAGATTAAGAACGCCGAGTTCTCAAAGTTGAA
GACACAGCAAAAAGCCCATGAAAGAAGCATGAATTCCAGCATGAGCATTT
TACAGGCTGCTCCAGATCCTTTGGAGAAACGCTTATCACTTCGCTTGAAT
AGGCTTAACATACACAGATCTGTGCCCGGGCTGAAAACCGATAATGGCAG
TGTGTTCGAATACAGCGAAAATGAGGATCAGACTAAGAAACGAAGAAATC
ATTTTGAACTGGAATTAAAGCAACTGCTACTTCATTACGCTCGGCTGCAG
GCAAAGCCGGAATCTGTGGATAACCTCCTGCCAAGAATACTCTCGTCGGT
CGGCAAGGTATTCACGGAGTTTGCTTCGTATGCTCAAAGTTTGGACTTTC
CACACAACTGCATGCTGTATCCCTACAATCCCCACAACCTAGAGGAGGAA
GTTCATCGCATTTCCCTGACCCATCAGAGCTGTTTGTATGATAACGAAAA
GGCTGTTCCGCTGCGTCGCTTCATAGCTACCTTGGCTTTGATTTGCCGGC
GAGAGGAAAGGATTTCTAGAGGTCTCACGGAGTGGAAAGAAAATGATCTG
GGACTGCTAGATATGGCTATTGAAGCTATCACAAAACTAGGATTTTCCTA
CGAGGTCGGCCAACACTTTGGATTGCTGGAAGCCTTGACTTCACTCCTAA
ATAGCCTCCTACAAGAAAATGCCCTTCTTCAACATAACGAGGAGCTACTC
TTCGATCTGCTTAAGCAGTTAGTTTTTACTCGTCCCAGTCCTTGGGTTTT
TGCTGAGCTTAGCTCCTGCTTTTTAAGCTGCCTTAGACATCCCCAACTTA
TGGATAAAATGTGTGTGAATAGTCCCAAGGACTGCTTTGTATCGGATCGC
GTTCGCTCCGTTTATCGATTTGGTCCCGACTCCTGTTTACTTCAGGTCTA
CGCGGGCCTACTCGAGCTATGCTTCTTTAGTGAAACTCCTCTGCGGCAGG
ACTACTTTCAGTTGCTGCTCAAGATCGGAGGAAATCATGTGCGATTCGCG
TTCGAGTGCTTCAAAAACCCACCGGATTTCATACTTGAAATGCTGCCTTA
CTTTGCCGACGATGGCGACGAGGACTCCAGCGATGGTACTCTGATGAAAA
CAGGCACCAGTCTGAGCTTCAACTCCACAGGAGCTGTGCAGGGATCGGTC
TCCAATGGATCGACATCAGCGTCTGTTTCGAACCCGAATCAAAATTCAAA
TTCAAGTACAACGCAGCGAGGAAAAGGCTGCGAGTGCTATGTAAAGTTGT
GCCTCAGTGCGGTAACAATTGTCTTCCAGGTGATGCACCAATGGATGTTG
CACAGCAGGAAAGCAGGCACCGAAGAAGTTGGCGAGATCTCCCGCATCGC
AGTGCACCTTCTGTCCCTTGTCTTTCACGAGTATTACCTCACCTGTCTGT
TTCGCGACTCCGAGGAGACGACCAAGCATTACCTTAGCCTCATATGCAAC
TGGTGGAGCGAGCATGCGAACCTGCTTGGTTTTCAGTCAATACATTTGCG
TTTGTTAAACCAACTGGTTAAAGCCCATTTCATGCTGAAACCCCTTCATC
TGGAGGCCAAGCCCAATAATCCAGTCAACGACCTCTCCGAATGGAAACGC
ATTGTCAAGAATGCGGATGACCAAAGGGCTGTGAAGTCGGCTGTGACAGT
TGATCCCAGCAAATTACTCAACACCGACTTCTTTAGTGCCCTTAAACGGG
AGGAGAACACTTTTGAGTAGTTATAGTTAGCTTAAACGTTTTAGTAATAT
ATACATATAGGTGTGGCGTTAATTTATTGTGAAGTTTCAAATGCTATGTT
AAGAATTGAAAAGGCTCGCTGCACAAATTTAGAGCTTAAAAAACGCATTC
CAAAATACAAATATGTAATGCAGCGTTTAAAGAAACCGCTAAATAAAAAA
AAAAAAAAAAAAAAAAAA

LD44887.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
mus304-RA 2944 mus304-RA 45..2840 1..2796 13980 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18100314..18101817 714..2217 7460 99.7 Plus
chr3L 24539361 chr3L 18099522..18100238 1..717 3540 99.6 Plus
chr3L 24539361 chr3L 18102135..18102532 2397..2794 1990 100 Plus
chr3L 24539361 chr3L 18101887..18102068 2215..2396 895 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18110628..18112131 714..2217 7520 100 Plus
3L 28110227 3L 18109836..18110552 1..717 3585 100 Plus
3L 28110227 3L 18112450..18112849 2397..2796 2000 100 Plus
3L 28110227 3L 18112202..18112383 2215..2396 910 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18103728..18105231 714..2217 7520 100 Plus
3L 28103327 3L 18102936..18103652 1..717 3585 100 Plus
3L 28103327 3L 18105550..18105949 2397..2796 2000 100 Plus
3L 28103327 3L 18105302..18105483 2215..2396 910 100 Plus
Blast to na_te.dros performed 2019-03-16 20:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 119..156 2118..2081 118 78.9 Minus

LD44887.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:09:20 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18099522..18100236 1..715 99 -> Plus
chr3L 18100316..18101816 716..2216 99 -> Plus
chr3L 18101889..18102068 2217..2396 99 -> Plus
chr3L 18102135..18102532 2397..2794 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:06 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 1..2541 80..2620 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:33 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 1..2541 80..2620 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:59 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 1..2541 80..2620 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:22 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 1..2541 80..2620 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:53:25 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 1..2541 80..2620 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:37 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 8..2801 1..2794 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:33 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 40..2833 1..2794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:59 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 23..2816 1..2794 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:22 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 8..2801 1..2794 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:25 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
mus304-RA 23..2816 1..2794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:20 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18109836..18110550 1..715 100 -> Plus
3L 18110630..18112130 716..2216 100 -> Plus
3L 18112204..18112383 2217..2396 100 -> Plus
3L 18112450..18112847 2397..2794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:20 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18109836..18110550 1..715 100 -> Plus
3L 18110630..18112130 716..2216 100 -> Plus
3L 18112204..18112383 2217..2396 100 -> Plus
3L 18112450..18112847 2397..2794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:20 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18109836..18110550 1..715 100 -> Plus
3L 18110630..18112130 716..2216 100 -> Plus
3L 18112204..18112383 2217..2396 100 -> Plus
3L 18112450..18112847 2397..2794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:59 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18102936..18103650 1..715 100 -> Plus
arm_3L 18103730..18105230 716..2216 100 -> Plus
arm_3L 18105304..18105483 2217..2396 100 -> Plus
arm_3L 18105550..18105947 2397..2794 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:50 Download gff for LD44887.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18102936..18103650 1..715 100 -> Plus
3L 18103730..18105230 716..2216 100 -> Plus
3L 18105304..18105483 2217..2396 100 -> Plus
3L 18105550..18105947 2397..2794 100   Plus

LD44887.pep Sequence

Translation from 79 to 2619

> LD44887.pep
MAKRFSAMKDFARCKKPRLDVSVTRGSARPSPPRNNFDGILWDDDDDVIL
MATQLAEAEIEAEERKKKGGTEVDIGNSEVTFSEFAPTFQGSTSTQQMFP
PPPPPQKKPTSLDMDAIFADDDDFDFLAVTLMDSEPQKMPEPKTSTSRIT
TSSISVQQKTTTTTTINATQSRQQEHQLKFLMDRIEALKRENAQLEKNLG
DSKERNEIKSGEVSLLRDELKHLRQQLQASKMEKLALADETNRDCNKKVA
EAAKQIAAKDIELKIKNAEFSKLKTQQKAHERSMNSSMSILQAAPDPLEK
RLSLRLNRLNIHRSVPGLKTDNGSVFEYSENEDQTKKRRNHFELELKQLL
LHYARLQAKPESVDNLLPRILSSVGKVFTEFASYAQSLDFPHNCMLYPYN
PHNLEEEVHRISLTHQSCLYDNEKAVPLRRFIATLALICRREERISRGLT
EWKENDLGLLDMAIEAITKLGFSYEVGQHFGLLEALTSLLNSLLQENALL
QHNEELLFDLLKQLVFTRPSPWVFAELSSCFLSCLRHPQLMDKMCVNSPK
DCFVSDRVRSVYRFGPDSCLLQVYAGLLELCFFSETPLRQDYFQLLLKIG
GNHVRFAFECFKNPPDFILEMLPYFADDGDEDSSDGTLMKTGTSLSFNST
GAVQGSVSNGSTSASVSNPNQNSNSSTTQRGKGCECYVKLCLSAVTIVFQ
VMHQWMLHSRKAGTEEVGEISRIAVHLLSLVFHEYYLTCLFRDSEETTKH
YLSLICNWWSEHANLLGFQSIHLRLLNQLVKAHFMLKPLHLEAKPNNPVN
DLSEWKRIVKNADDQRAVKSAVTVDPSKLLNTDFFSALKREENTFE*

LD44887.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23614-PA 844 GF23614-PA 3..844 2..846 2889 72.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13649-PA 847 GG13649-PA 3..847 2..846 3801 91.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10057-PA 808 GH10057-PA 1..808 1..809 1620 43.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
mus304-PA 846 CG7347-PA 1..846 1..846 4377 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16418-PA 837 GI16418-PA 1..837 1..846 1644 42.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22861-PA 848 GL22861-PA 3..848 2..846 2842 66.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23899-PA 848 GA23899-PA 3..848 2..846 2810 65.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14964-PA 847 GM14964-PA 3..847 2..846 4400 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14744-PA 733 GD14744-PA 1..733 114..846 3807 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16213-PA 843 GJ16213-PA 1..843 1..846 1805 45.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21090-PA 828 GK21090-PA 3..828 2..846 1566 43.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19943-PA 849 GE19943-PA 3..849 2..846 3903 91.7 Plus

LD44887.hyp Sequence

Translation from 79 to 2619

> LD44887.hyp
MAKRFSAMKDFARCKKPRLDVSVTRGSARPSPPRNNFDGILWDDDDDVIL
MATQLAEAEIEAEERKKKGGTEVDIGNSEVTFSEFAPTFQGSTSTQQMFP
PPPPPQKKPTSLDMDAIFADDDDFDFLAVTLMDSEPQKMPEPKTSTSRIT
TSSISVQQKTTTTTTINATQSRQQEHQLKFLMDRIEALKRENAQLEKNLG
DSKERNEIKSGEVSLLRDELKHLRQQLQASKMEKLALADETNRDCNKKVA
EAAKQIAAKDIELKIKNAEFSKLKTQQKAHERSMNSSMSILQAAPDPLEK
RLSLRLNRLNIHRSVPGLKTDNGSVFEYSENEDQTKKRRNHFELELKQLL
LHYARLQAKPESVDNLLPRILSSVGKVFTEFASYAQSLDFPHNCMLYPYN
PHNLEEEVHRISLTHQSCLYDNEKAVPLRRFIATLALICRREERISRGLT
EWKENDLGLLDMAIEAITKLGFSYEVGQHFGLLEALTSLLNSLLQENALL
QHNEELLFDLLKQLVFTRPSPWVFAELSSCFLSCLRHPQLMDKMCVNSPK
DCFVSDRVRSVYRFGPDSCLLQVYAGLLELCFFSETPLRQDYFQLLLKIG
GNHVRFAFECFKNPPDFILEMLPYFADDGDEDSSDGTLMKTGTSLSFNST
GAVQGSVSNGSTSASVSNPNQNSNSSTTQRGKGCECYVKLCLSAVTIVFQ
VMHQWMLHSRKAGTEEVGEISRIAVHLLSLVFHEYYLTCLFRDSEETTKH
YLSLICNWWSEHANLLGFQSIHLRLLNQLVKAHFMLKPLHLEAKPNNPVN
DLSEWKRIVKNADDQRAVKSAVTVDPSKLLNTDFFSALKREENTFE*

LD44887.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
mus304-PA 846 CG7347-PA 1..846 1..846 4377 100 Plus