BDGP Sequence Production Resources |
Search the DGRC for LD44887
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 448 |
Well: | 87 |
Vector: | pOT2 |
Associated Gene/Transcript | mus304-RA |
Protein status: | LD44887.pep: gold |
Preliminary Size: | 2809 |
Sequenced Size: | 2818 |
Gene | Date | Evidence |
---|---|---|
CG7347 | 2001-01-01 | Release 2 assignment |
CG7347 | 2002-05-20 | Blastp of sequenced clone |
CG7347 | 2003-01-01 | Sim4 clustering to Release 3 |
mus304 | 2008-04-29 | Release 5.5 accounting |
mus304 | 2008-08-15 | Release 5.9 accounting |
mus304 | 2008-12-18 | 5.12 accounting |
2818 bp (2818 high quality bases) assembled on 2002-05-20
GenBank Submission: AY118585
> LD44887.complete AAACAAAGCAAACCGGCAAAATAATCTACGACTTTCCATGGCCAAAAAGT AACGAAATATAGCGGAAACTGGAGGAACCATGGCCAAGCGCTTTTCTGCC ATGAAAGACTTCGCGCGGTGCAAGAAACCGCGCCTGGATGTTAGCGTTAC CCGCGGATCAGCGCGACCCAGTCCACCGAGGAACAATTTCGATGGGATTC TCTGGGACGACGATGACGATGTCATCCTGATGGCCACCCAGCTGGCGGAG GCGGAAATCGAGGCGGAGGAGCGGAAAAAGAAGGGCGGAACAGAGGTGGA CATCGGCAACAGCGAGGTCACCTTCAGCGAATTTGCACCCACTTTTCAGG GCTCAACCAGCACACAGCAAATGTTTCCGCCGCCACCGCCGCCACAAAAG AAGCCTACTTCCCTGGATATGGATGCGATTTTCGCGGATGATGATGATTT CGATTTTCTGGCCGTTACCCTCATGGACAGTGAGCCACAAAAGATGCCGG AGCCGAAGACCAGCACAAGTAGGATAACTACCAGCAGCATAAGTGTTCAG CAGAAAACCACGACCACGACGACCATCAATGCCACGCAATCCCGCCAGCA GGAGCATCAGCTAAAGTTTCTCATGGATAGGATTGAAGCCCTTAAGCGGG AAAACGCGCAGCTGGAAAAGAATTTGGGCGACAGTAAGGAACGCAATGAG ATCAAGTCTGGTGAGGTTTCCTTACTTCGTGATGAGCTGAAGCACTTGCG CCAGCAGCTGCAGGCTAGCAAAATGGAAAAGCTGGCTTTGGCCGACGAAA CGAATCGGGATTGCAACAAAAAAGTGGCAGAAGCGGCCAAACAAATTGCG GCCAAGGACATCGAGTTGAAGATTAAGAACGCCGAGTTCTCAAAGTTGAA GACACAGCAAAAAGCCCATGAAAGAAGCATGAATTCCAGCATGAGCATTT TACAGGCTGCTCCAGATCCTTTGGAGAAACGCTTATCACTTCGCTTGAAT AGGCTTAACATACACAGATCTGTGCCCGGGCTGAAAACCGATAATGGCAG TGTGTTCGAATACAGCGAAAATGAGGATCAGACTAAGAAACGAAGAAATC ATTTTGAACTGGAATTAAAGCAACTGCTACTTCATTACGCTCGGCTGCAG GCAAAGCCGGAATCTGTGGATAACCTCCTGCCAAGAATACTCTCGTCGGT CGGCAAGGTATTCACGGAGTTTGCTTCGTATGCTCAAAGTTTGGACTTTC CACACAACTGCATGCTGTATCCCTACAATCCCCACAACCTAGAGGAGGAA GTTCATCGCATTTCCCTGACCCATCAGAGCTGTTTGTATGATAACGAAAA GGCTGTTCCGCTGCGTCGCTTCATAGCTACCTTGGCTTTGATTTGCCGGC GAGAGGAAAGGATTTCTAGAGGTCTCACGGAGTGGAAAGAAAATGATCTG GGACTGCTAGATATGGCTATTGAAGCTATCACAAAACTAGGATTTTCCTA CGAGGTCGGCCAACACTTTGGATTGCTGGAAGCCTTGACTTCACTCCTAA ATAGCCTCCTACAAGAAAATGCCCTTCTTCAACATAACGAGGAGCTACTC TTCGATCTGCTTAAGCAGTTAGTTTTTACTCGTCCCAGTCCTTGGGTTTT TGCTGAGCTTAGCTCCTGCTTTTTAAGCTGCCTTAGACATCCCCAACTTA TGGATAAAATGTGTGTGAATAGTCCCAAGGACTGCTTTGTATCGGATCGC GTTCGCTCCGTTTATCGATTTGGTCCCGACTCCTGTTTACTTCAGGTCTA CGCGGGCCTACTCGAGCTATGCTTCTTTAGTGAAACTCCTCTGCGGCAGG ACTACTTTCAGTTGCTGCTCAAGATCGGAGGAAATCATGTGCGATTCGCG TTCGAGTGCTTCAAAAACCCACCGGATTTCATACTTGAAATGCTGCCTTA CTTTGCCGACGATGGCGACGAGGACTCCAGCGATGGTACTCTGATGAAAA CAGGCACCAGTCTGAGCTTCAACTCCACAGGAGCTGTGCAGGGATCGGTC TCCAATGGATCGACATCAGCGTCTGTTTCGAACCCGAATCAAAATTCAAA TTCAAGTACAACGCAGCGAGGAAAAGGCTGCGAGTGCTATGTAAAGTTGT GCCTCAGTGCGGTAACAATTGTCTTCCAGGTGATGCACCAATGGATGTTG CACAGCAGGAAAGCAGGCACCGAAGAAGTTGGCGAGATCTCCCGCATCGC AGTGCACCTTCTGTCCCTTGTCTTTCACGAGTATTACCTCACCTGTCTGT TTCGCGACTCCGAGGAGACGACCAAGCATTACCTTAGCCTCATATGCAAC TGGTGGAGCGAGCATGCGAACCTGCTTGGTTTTCAGTCAATACATTTGCG TTTGTTAAACCAACTGGTTAAAGCCCATTTCATGCTGAAACCCCTTCATC TGGAGGCCAAGCCCAATAATCCAGTCAACGACCTCTCCGAATGGAAACGC ATTGTCAAGAATGCGGATGACCAAAGGGCTGTGAAGTCGGCTGTGACAGT TGATCCCAGCAAATTACTCAACACCGACTTCTTTAGTGCCCTTAAACGGG AGGAGAACACTTTTGAGTAGTTATAGTTAGCTTAAACGTTTTAGTAATAT ATACATATAGGTGTGGCGTTAATTTATTGTGAAGTTTCAAATGCTATGTT AAGAATTGAAAAGGCTCGCTGCACAAATTTAGAGCTTAAAAAACGCATTC CAAAATACAAATATGTAATGCAGCGTTTAAAGAAACCGCTAAATAAAAAA AAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mus304-RA | 2944 | mus304-RA | 45..2840 | 1..2796 | 13980 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 18100314..18101817 | 714..2217 | 7460 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 18099522..18100238 | 1..717 | 3540 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 18102135..18102532 | 2397..2794 | 1990 | 100 | Plus |
chr3L | 24539361 | chr3L | 18101887..18102068 | 2215..2396 | 895 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 18110628..18112131 | 714..2217 | 7520 | 100 | Plus |
3L | 28110227 | 3L | 18109836..18110552 | 1..717 | 3585 | 100 | Plus |
3L | 28110227 | 3L | 18112450..18112849 | 2397..2796 | 2000 | 100 | Plus |
3L | 28110227 | 3L | 18112202..18112383 | 2215..2396 | 910 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 18103728..18105231 | 714..2217 | 7520 | 100 | Plus |
3L | 28103327 | 3L | 18102936..18103652 | 1..717 | 3585 | 100 | Plus |
3L | 28103327 | 3L | 18105550..18105949 | 2397..2796 | 2000 | 100 | Plus |
3L | 28103327 | 3L | 18105302..18105483 | 2215..2396 | 910 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rt1b | 5171 | Rt1b RT1B 5150bp | 119..156 | 2118..2081 | 118 | 78.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18099522..18100236 | 1..715 | 99 | -> | Plus |
chr3L | 18100316..18101816 | 716..2216 | 99 | -> | Plus |
chr3L | 18101889..18102068 | 2217..2396 | 99 | -> | Plus |
chr3L | 18102135..18102532 | 2397..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 1..2541 | 80..2620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 1..2541 | 80..2620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 1..2541 | 80..2620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 1..2541 | 80..2620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 1..2541 | 80..2620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 8..2801 | 1..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 40..2833 | 1..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 23..2816 | 1..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 8..2801 | 1..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus304-RA | 23..2816 | 1..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18109836..18110550 | 1..715 | 100 | -> | Plus |
3L | 18110630..18112130 | 716..2216 | 100 | -> | Plus |
3L | 18112204..18112383 | 2217..2396 | 100 | -> | Plus |
3L | 18112450..18112847 | 2397..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18109836..18110550 | 1..715 | 100 | -> | Plus |
3L | 18110630..18112130 | 716..2216 | 100 | -> | Plus |
3L | 18112204..18112383 | 2217..2396 | 100 | -> | Plus |
3L | 18112450..18112847 | 2397..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18109836..18110550 | 1..715 | 100 | -> | Plus |
3L | 18110630..18112130 | 716..2216 | 100 | -> | Plus |
3L | 18112204..18112383 | 2217..2396 | 100 | -> | Plus |
3L | 18112450..18112847 | 2397..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18102936..18103650 | 1..715 | 100 | -> | Plus |
arm_3L | 18103730..18105230 | 716..2216 | 100 | -> | Plus |
arm_3L | 18105304..18105483 | 2217..2396 | 100 | -> | Plus |
arm_3L | 18105550..18105947 | 2397..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18102936..18103650 | 1..715 | 100 | -> | Plus |
3L | 18103730..18105230 | 716..2216 | 100 | -> | Plus |
3L | 18105304..18105483 | 2217..2396 | 100 | -> | Plus |
3L | 18105550..18105947 | 2397..2794 | 100 | Plus |
Translation from 79 to 2619
> LD44887.pep MAKRFSAMKDFARCKKPRLDVSVTRGSARPSPPRNNFDGILWDDDDDVIL MATQLAEAEIEAEERKKKGGTEVDIGNSEVTFSEFAPTFQGSTSTQQMFP PPPPPQKKPTSLDMDAIFADDDDFDFLAVTLMDSEPQKMPEPKTSTSRIT TSSISVQQKTTTTTTINATQSRQQEHQLKFLMDRIEALKRENAQLEKNLG DSKERNEIKSGEVSLLRDELKHLRQQLQASKMEKLALADETNRDCNKKVA EAAKQIAAKDIELKIKNAEFSKLKTQQKAHERSMNSSMSILQAAPDPLEK RLSLRLNRLNIHRSVPGLKTDNGSVFEYSENEDQTKKRRNHFELELKQLL LHYARLQAKPESVDNLLPRILSSVGKVFTEFASYAQSLDFPHNCMLYPYN PHNLEEEVHRISLTHQSCLYDNEKAVPLRRFIATLALICRREERISRGLT EWKENDLGLLDMAIEAITKLGFSYEVGQHFGLLEALTSLLNSLLQENALL QHNEELLFDLLKQLVFTRPSPWVFAELSSCFLSCLRHPQLMDKMCVNSPK DCFVSDRVRSVYRFGPDSCLLQVYAGLLELCFFSETPLRQDYFQLLLKIG GNHVRFAFECFKNPPDFILEMLPYFADDGDEDSSDGTLMKTGTSLSFNST GAVQGSVSNGSTSASVSNPNQNSNSSTTQRGKGCECYVKLCLSAVTIVFQ VMHQWMLHSRKAGTEEVGEISRIAVHLLSLVFHEYYLTCLFRDSEETTKH YLSLICNWWSEHANLLGFQSIHLRLLNQLVKAHFMLKPLHLEAKPNNPVN DLSEWKRIVKNADDQRAVKSAVTVDPSKLLNTDFFSALKREENTFE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23614-PA | 844 | GF23614-PA | 3..844 | 2..846 | 2889 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13649-PA | 847 | GG13649-PA | 3..847 | 2..846 | 3801 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10057-PA | 808 | GH10057-PA | 1..808 | 1..809 | 1620 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mus304-PA | 846 | CG7347-PA | 1..846 | 1..846 | 4377 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16418-PA | 837 | GI16418-PA | 1..837 | 1..846 | 1644 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22861-PA | 848 | GL22861-PA | 3..848 | 2..846 | 2842 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23899-PA | 848 | GA23899-PA | 3..848 | 2..846 | 2810 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14964-PA | 847 | GM14964-PA | 3..847 | 2..846 | 4400 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14744-PA | 733 | GD14744-PA | 1..733 | 114..846 | 3807 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16213-PA | 843 | GJ16213-PA | 1..843 | 1..846 | 1805 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21090-PA | 828 | GK21090-PA | 3..828 | 2..846 | 1566 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19943-PA | 849 | GE19943-PA | 3..849 | 2..846 | 3903 | 91.7 | Plus |
Translation from 79 to 2619
> LD44887.hyp MAKRFSAMKDFARCKKPRLDVSVTRGSARPSPPRNNFDGILWDDDDDVIL MATQLAEAEIEAEERKKKGGTEVDIGNSEVTFSEFAPTFQGSTSTQQMFP PPPPPQKKPTSLDMDAIFADDDDFDFLAVTLMDSEPQKMPEPKTSTSRIT TSSISVQQKTTTTTTINATQSRQQEHQLKFLMDRIEALKRENAQLEKNLG DSKERNEIKSGEVSLLRDELKHLRQQLQASKMEKLALADETNRDCNKKVA EAAKQIAAKDIELKIKNAEFSKLKTQQKAHERSMNSSMSILQAAPDPLEK RLSLRLNRLNIHRSVPGLKTDNGSVFEYSENEDQTKKRRNHFELELKQLL LHYARLQAKPESVDNLLPRILSSVGKVFTEFASYAQSLDFPHNCMLYPYN PHNLEEEVHRISLTHQSCLYDNEKAVPLRRFIATLALICRREERISRGLT EWKENDLGLLDMAIEAITKLGFSYEVGQHFGLLEALTSLLNSLLQENALL QHNEELLFDLLKQLVFTRPSPWVFAELSSCFLSCLRHPQLMDKMCVNSPK DCFVSDRVRSVYRFGPDSCLLQVYAGLLELCFFSETPLRQDYFQLLLKIG GNHVRFAFECFKNPPDFILEMLPYFADDGDEDSSDGTLMKTGTSLSFNST GAVQGSVSNGSTSASVSNPNQNSNSSTTQRGKGCECYVKLCLSAVTIVFQ VMHQWMLHSRKAGTEEVGEISRIAVHLLSLVFHEYYLTCLFRDSEETTKH YLSLICNWWSEHANLLGFQSIHLRLLNQLVKAHFMLKPLHLEAKPNNPVN DLSEWKRIVKNADDQRAVKSAVTVDPSKLLNTDFFSALKREENTFE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mus304-PA | 846 | CG7347-PA | 1..846 | 1..846 | 4377 | 100 | Plus |