Clone LD44910 Report

Search the DGRC for LD44910

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:449
Well:10
Vector:pOT2
Associated Gene/TranscriptCG16896-RA
Protein status:LD44910.pep: gold
Sequenced Size:3294

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16896 2003-01-01 Sim4 clustering to Release 3
CG16896 2003-02-13 Blastp of sequenced clone
CG16896 2008-04-29 Release 5.5 accounting
CG16896 2008-08-15 Release 5.9 accounting
CG16896 2008-12-18 5.12 accounting

Clone Sequence Records

LD44910.complete Sequence

3294 bp (3294 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003782

> LD44910.complete
TTTTCACTCACTTAATTGAACTGGAAATATTTATAGTCGAAAAAAAATAG
CCTGGATGGTGTTCATTTGGCTGCACTGGAACTAGGAACAAGCATTCAGT
TGTTAAATATACAAATTTGTAAATATCCTTGCTGGATAAATGAATAGCGG
TGTGGCGTTCCTTTTTTCATTGGCGAAAGTACACGTCCTTTGACAAATGG
AGTTACACCTCATTTGAGCCCATAACATGGACAGGATTATAAAATCTGAA
ATCAAGAAGGAACAGATCACGGGTATTCCTTCGGTGGCCCTTCATGGCAT
CGAGAACTCGATGCAGGACGATAGAGATGTCAACACTGACGTGGAGGAGG
ACTTCACGGAGGAGGAGTTGGAGCTATTCACAGATCAGGATTCAGACACG
GGAGATTCTGATGTGTCGCTCACGCAGCCTGAGGCAGCGCGCAGTGTGCT
TTTGAGCAATGCTCCTATGCGCAAGTACCCTTTTAAGCTGAAGCAAAGCG
AATCTGGGAACGTCCTAACCGTTCACCACACGATCAAGGAAGCAGGTCAG
GCACTGCGCATCCAGATTGCCGCCTGCTGCTTCAACGAACTTAGCAACAA
GCTGGTGGTAATAGACAAGCGTGGCAATGTTTTCGTCTTTGACTTTGTAC
GCAAACGCTACTGGCGGCTGGGATTCCGGATGCCCAAGGCCAAGCTCATT
CGGCCATCCCCTCTGCACGGTAGCGACTACATTGTAGGCAATAAAACGGG
CCACATTTTCACCATAGACGTGGACAACTCAATTCTTGGGGTCGACGGAG
AAGTGGGAAGCGCAGCGCTTGAGGAATTGAGTTGGAGCAATAGCCTGCAG
AATGCACGCTCCTCTATCGCTCTGATGCGTTTCGGCAGCGATGCACTTCT
GGTGAATCTCCATACTCTGGAGGTTTCCCATCAGCTGGATTTCGATCAGT
CGCGCTACACGCTGAAGTTCGCTGCCTTCCTGCCCCACTCGGACCAGTTC
TTTATAGGGTTTTCTAACGATTCTCTGCATGTGTGGTCCTCGCATTCATT
GAGCACTTTGCGGATGGGCCAGCCTATCAAGGCCAGGAATCGCAAACTGA
GACTGCTACCAGCCGCAGAATCTATACCGGAAATAGTTCTCCGAAGCCCG
GATGACAGTGACTTGGAGGAGGACTTGACGTTTGACTGCCAGCACTACGA
CTTTGCCGATGGAATGCTACTCAGCTACTGCTTCACCCCCGACGGCAACA
AGATGTGCCTTAGTACCTTGGATGGCTATCTTTTATTGCTGAGCGTGGCC
TCTTTTGATCTGGAAAAGATGTACCGCTTGACGGACTTTACTCTCCACCA
AATGGCTTTCCTCTCGCAGCCAAAGGAGCGCATAGTGTTTGGAATCACCA
CCAGAAACCAAGCGGTCATGCTGGATTTAGCCAATACGGATCACAAGCTA
ATTGTGCAGCGCTCCAATGCACGAAGTTTGAGTCTGAGTCGGGATGGCAA
GCTGTTGAGTGTAACGTCTCGCTGCGGAGAAGTCAATGTGTGGTCCACGT
GCCGCATTTTTAACGCCCTGCAAGCTCAGATCCGCTGCCTCAGCCAGGTG
AAGTCCACTTTCAAACAACCGAATCCTCTGCCGCCCTGCAGCGTCGGTGG
AGGCGTTAGCAAAGAACTGCGAGATCTGCTCAATCCGCAGCGCCTAAAAA
CCATGCTCAAGGAGTACGGTTGCTATCCTGAAAAGTACAGGTACCTAATT
TGGACATCCCTCTTAGACCTGCCCTGCAATGGGCCTCAATTCCAGGAACT
GATCAAACTGGGGGCACCTCTCCTGGTCAGAAATCGGGCCAAGAAGCTTA
AGATTCGCAACGATCACCAACGCCGTGTTGTGATTAAGATTTGGAGTTGC
CTTGCTCAATGGTGCAAGGTCTTAGCTCACGCAGATTTTATGCCACACCT
GATTTTTCCGTTTGTGAAGCGAATGCCCAAGAATAGTCTGGTTTGCTTTG
AGTTAATCGCTACCCTTGTATTGAATCATTTTCAGCTGTGTTTCGAATTT
CATCCGCTGCCGCCCTCCAATTATCTGGCCATGTGCGAAAATATCCTGCA
GCACTGTGACGAACAGCTTTGCAAGTTTTATAAATCCCAGGAGATGTTGC
CTAAAGATTTTGCCTGGCCCCTTCTGAGCACTGCCTTTTCCGAGGTCCTT
GAAGAGGAGCAGTGGCTATCGCTGTGGGACAACATATTTTCGGAACCACC
CTGGTTTCCAGTCTTTCTTGTAGTGGCCTACAATTTGATTAATCGAGAGA
TAATCTTGCGGCTGCCAGACAAGCGATCAGTCCTCTTCTTCTTCCACGAT
CAGAACCCTGTGGACATCAGCAAACTTCTTTCCAAGGCGCGCAAACTAAT
GTCCAAATGTGCGCTTGCACTTCACCCACAGCGTTTCATGACACACTTCA
GCCCCATTCCGAAGGGTGTGTATCCAAAGTTTCTCAAATATCCCAGCGAG
TGGATCGATGAGCAGGAGTATCAAGCAGTATCGTTGATCAAGCACAACCA
GGAAATCGATGCCCGAATTCGCCATCTTGAGTTGGAGGAGGTTAAAATTA
TGGAACGCCTTGAAACAGGACTTAAGCAAGAGGAGCACGCTCGCCGCCTC
AAAGAAATGGAGAGAGTTTACCAGGACACAATCCATCGCGAGGAAGAGCG
CATCACCTGCCAACGGAAAATGCTGCTCACCTACCAAATGGAGGTGCGTC
GGCGCAAGAGCGAGGTCATCACTAAGTTACAGGAGTCTGAGCAGCGACGC
AAAATTCTGGAGATGGAGAAGGACATGGACCTGCTGATGCACAGTATTGA
GCGTGAGCGTCGGCGTCACAACCAAGAAATGCAGCTGGCCGAAGATGAAA
TTCGTAACCAGGAGATGGAGCTCCTTGCCCAGCGCTACTACTCGGATACG
GAGGGTGCTCCACTGGCACAGAAGTATTACGACAAAATCCAGAAACTTTG
CTATCAGCGTGATCAGCTGCAGAAAAACTTGCGTGATATGACCATGGAAC
AGCTGCGAACTCCAGCAACATCATCTGTGCAATTTAGTCCCCAGCTGGTG
GATATCGAGAATTCCATTTTTGAGATACAGAGAGAGTTTACGGAAATCAT
AACCACAGACAAAACATTGGAGTACAGAAGGAATTTAACTTAACTGAGGC
TTTTTTGTACGAATAAACTACAAGGCTAGGATTATGTACATGGCACTAGA
AAATAAATAAACAAGGCATATTGGTTAAAAAAAAAAAAAAAAAA

LD44910.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG16896-RA 3308 CG16896-RA 32..3308 1..3277 16385 100 Plus
Atf-2-RC 1451 Atf-2-RC 1297..1451 3277..3123 775 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20757668..20760084 3037..621 12025 99.8 Minus
chr2R 21145070 chr2R 20760318..20760825 508..1 2525 99.8 Minus
chr2R 21145070 chr2R 20757366..20757604 3276..3038 1195 100 Minus
chr2R 21145070 chr2R 20760146..20760260 621..507 575 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24871709..24874125 3037..621 12085 100 Minus
2R 25286936 2R 24874359..24874866 508..1 2540 100 Minus
2R 25286936 2R 24871406..24871645 3277..3038 1200 100 Minus
2R 25286936 2R 24874187..24874301 621..507 575 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24872908..24875324 3037..621 12085 100 Minus
2R 25260384 2R 24875558..24876065 508..1 2540 100 Minus
2R 25260384 2R 24872605..24872844 3277..3038 1200 100 Minus
2R 25260384 2R 24875386..24875500 621..507 575 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:25:56 has no hits.

LD44910.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:26:58 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20757366..20757604 3038..3276 100 <- Minus
chr2R 20757668..20760083 622..3037 99 <- Minus
chr2R 20760146..20760259 508..621 100 <- Minus
chr2R 20760319..20760825 1..507 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:07 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 1..2967 227..3193 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:34 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 1..2967 227..3193 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:52 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 1..2967 227..3193 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:42 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 1..2967 227..3193 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:10:14 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 1..2967 227..3193 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:05:13 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 32..3307 1..3276 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:34 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 32..3307 1..3276 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:52 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 47..3322 1..3276 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:43 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 32..3307 1..3276 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:10:14 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
CG16896-RA 47..3322 1..3276 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:58 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24871407..24871645 3038..3276 100 <- Minus
2R 24871709..24874124 622..3037 100 <- Minus
2R 24874187..24874300 508..621 100 <- Minus
2R 24874360..24874866 1..507 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:58 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24871407..24871645 3038..3276 100 <- Minus
2R 24871709..24874124 622..3037 100 <- Minus
2R 24874187..24874300 508..621 100 <- Minus
2R 24874360..24874866 1..507 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:58 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24871407..24871645 3038..3276 100 <- Minus
2R 24871709..24874124 622..3037 100 <- Minus
2R 24874187..24874300 508..621 100 <- Minus
2R 24874360..24874866 1..507 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:52 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20758930..20759168 3038..3276 100 <- Minus
arm_2R 20759232..20761647 622..3037 100 <- Minus
arm_2R 20761710..20761823 508..621 100 <- Minus
arm_2R 20761883..20762389 1..507 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:26 Download gff for LD44910.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24872624..24872862 3038..3276 100 <- Minus
2R 24872926..24875341 622..3037 100 <- Minus
2R 24875404..24875517 508..621 100 <- Minus
2R 24875577..24876083 1..507 100   Minus

LD44910.pep Sequence

Translation from 226 to 3192

> LD44910.pep
MDRIIKSEIKKEQITGIPSVALHGIENSMQDDRDVNTDVEEDFTEEELEL
FTDQDSDTGDSDVSLTQPEAARSVLLSNAPMRKYPFKLKQSESGNVLTVH
HTIKEAGQALRIQIAACCFNELSNKLVVIDKRGNVFVFDFVRKRYWRLGF
RMPKAKLIRPSPLHGSDYIVGNKTGHIFTIDVDNSILGVDGEVGSAALEE
LSWSNSLQNARSSIALMRFGSDALLVNLHTLEVSHQLDFDQSRYTLKFAA
FLPHSDQFFIGFSNDSLHVWSSHSLSTLRMGQPIKARNRKLRLLPAAESI
PEIVLRSPDDSDLEEDLTFDCQHYDFADGMLLSYCFTPDGNKMCLSTLDG
YLLLLSVASFDLEKMYRLTDFTLHQMAFLSQPKERIVFGITTRNQAVMLD
LANTDHKLIVQRSNARSLSLSRDGKLLSVTSRCGEVNVWSTCRIFNALQA
QIRCLSQVKSTFKQPNPLPPCSVGGGVSKELRDLLNPQRLKTMLKEYGCY
PEKYRYLIWTSLLDLPCNGPQFQELIKLGAPLLVRNRAKKLKIRNDHQRR
VVIKIWSCLAQWCKVLAHADFMPHLIFPFVKRMPKNSLVCFELIATLVLN
HFQLCFEFHPLPPSNYLAMCENILQHCDEQLCKFYKSQEMLPKDFAWPLL
STAFSEVLEEEQWLSLWDNIFSEPPWFPVFLVVAYNLINREIILRLPDKR
SVLFFFHDQNPVDISKLLSKARKLMSKCALALHPQRFMTHFSPIPKGVYP
KFLKYPSEWIDEQEYQAVSLIKHNQEIDARIRHLELEEVKIMERLETGLK
QEEHARRLKEMERVYQDTIHREEERITCQRKMLLTYQMEVRRRKSEVITK
LQESEQRRKILEMEKDMDLLMHSIERERRRHNQEMQLAEDEIRNQEMELL
AQRYYSDTEGAPLAQKYYDKIQKLCYQRDQLQKNLRDMTMEQLRTPATSS
VQFSPQLVDIENSIFEIQREFTEIITTDKTLEYRRNLT*

LD44910.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11534-PA 983 GF11534-PA 76..973 82..978 3689 74.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19882-PA 988 GG19882-PA 1..988 1..988 4838 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21532-PA 989 GH21532-PA 84..988 78..980 3243 64.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG16896-PA 988 CG16896-PA 1..988 1..988 5145 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19504-PA 904 GI19504-PA 1..900 81..978 2933 59 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16783-PA 956 GL16783-PA 15..954 40..980 3609 70.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14203-PA 956 GA14203-PA 15..954 40..980 3586 70.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11784-PA 989 GM11784-PA 1..988 1..987 4987 94.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24912-PA 978 GD24912-PA 1..977 1..987 4909 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21073-PA 976 GJ21073-PA 65..975 72..980 3213 64.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21641-PA 962 GK21641-PA 64..960 80..979 3343 67.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11407-PA 990 GE11407-PA 1..990 1..988 4804 92.4 Plus

LD44910.hyp Sequence

Translation from 226 to 3192

> LD44910.hyp
MDRIIKSEIKKEQITGIPSVALHGIENSMQDDRDVNTDVEEDFTEEELEL
FTDQDSDTGDSDVSLTQPEAARSVLLSNAPMRKYPFKLKQSESGNVLTVH
HTIKEAGQALRIQIAACCFNELSNKLVVIDKRGNVFVFDFVRKRYWRLGF
RMPKAKLIRPSPLHGSDYIVGNKTGHIFTIDVDNSILGVDGEVGSAALEE
LSWSNSLQNARSSIALMRFGSDALLVNLHTLEVSHQLDFDQSRYTLKFAA
FLPHSDQFFIGFSNDSLHVWSSHSLSTLRMGQPIKARNRKLRLLPAAESI
PEIVLRSPDDSDLEEDLTFDCQHYDFADGMLLSYCFTPDGNKMCLSTLDG
YLLLLSVASFDLEKMYRLTDFTLHQMAFLSQPKERIVFGITTRNQAVMLD
LANTDHKLIVQRSNARSLSLSRDGKLLSVTSRCGEVNVWSTCRIFNALQA
QIRCLSQVKSTFKQPNPLPPCSVGGGVSKELRDLLNPQRLKTMLKEYGCY
PEKYRYLIWTSLLDLPCNGPQFQELIKLGAPLLVRNRAKKLKIRNDHQRR
VVIKIWSCLAQWCKVLAHADFMPHLIFPFVKRMPKNSLVCFELIATLVLN
HFQLCFEFHPLPPSNYLAMCENILQHCDEQLCKFYKSQEMLPKDFAWPLL
STAFSEVLEEEQWLSLWDNIFSEPPWFPVFLVVAYNLINREIILRLPDKR
SVLFFFHDQNPVDISKLLSKARKLMSKCALALHPQRFMTHFSPIPKGVYP
KFLKYPSEWIDEQEYQAVSLIKHNQEIDARIRHLELEEVKIMERLETGLK
QEEHARRLKEMERVYQDTIHREEERITCQRKMLLTYQMEVRRRKSEVITK
LQESEQRRKILEMEKDMDLLMHSIERERRRHNQEMQLAEDEIRNQEMELL
AQRYYSDTEGAPLAQKYYDKIQKLCYQRDQLQKNLRDMTMEQLRTPATSS
VQFSPQLVDIENSIFEIQREFTEIITTDKTLEYRRNLT*

LD44910.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG16896-PA 988 CG16896-PA 1..988 1..988 5145 100 Plus