Clone LD44914 Report

Search the DGRC for LD44914

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:449
Well:14
Vector:pOT2
Associated Gene/TranscriptCG1635-RA
Protein status:LD44914.pep: gold
Preliminary Size:1666
Sequenced Size:1537

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1635 2001-01-01 Release 2 assignment
CG1635 2001-09-19 Blastp of sequenced clone
CG1635 2003-01-01 Sim4 clustering to Release 3
CG1635 2008-04-29 Release 5.5 accounting
CG1635 2008-08-15 Release 5.9 accounting
CG1635 2008-12-18 5.12 accounting

Clone Sequence Records

LD44914.complete Sequence

1537 bp (1537 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058713

> LD44914.complete
AGAAAGCTGCGAAACTAAGTTAAACCGAGATGATGCGTTCTTTGATAGGA
GCACAAAAGTGCTGGGGCCTGATCCGCACCAGGAACTTTATGGAATTACC
CACCAAACAGGTGCCAGCATCCTTCGCATTGTTCAAGCGTCACTACTCAC
CGCCCACGCATATCAAGCAATCAGCGGTCGCCAATGAATCCGGAACCATG
GCGGAGGTCAAGCAGGGGATGATGAAGCGATTGGGGCTGGAGCCCGGTTA
CAACCCGCTGCCCAAATCCAGGGAGCAGCTGCTCAAGTACCAGCCGAAGC
TGGAGGATCTGCCTCCAAGAGCTATGCAGGATTCCTTCACCTCGGCCATC
ATTCCTCTGAGCACGGACCGCAGTTTGCAGGACAAATATGTGACCTATCT
GGGCAATGTGCGATTCGGGCGACTTCTGGAGGACATGGACTTGTTTGCTG
CTTGGTGCTGTCATAAACACCTGGTTCTGCCCAATCTGCCGGAGGGAGTT
CATCTGCCGTACACCTTTGTGACCATTCTGGTGGACCGCATCGATTTCAC
CAATGTCTTGGCTTCAGGCACCCAAGATATCCGTTTGTCTGGGCACGTTT
CCTGGGTGGGAACCAGTTCAATTGAGGTGGTAGTGTGGCTGGAACAGATG
GTTGGCGGGAGGTACCAAAAGTTAACCCGTGCCTTGTTCCTGATGGCAGC
AAGAAACGCTAACAATACCGGAGCGGCTCCTGTGAACCCCTTACAGCCGG
CCAACGAGGAAGAGAAAGTGATTCTGGCTGGCGGCGCAGATAGAAAGAAG
AAACGTCAGATTCTCTGTGCTCAGTCCATCTTTAAGGTGGAACCCAATGA
CCCGGAGCAGACAATTATGTACGAGCTGTACAAAAGGACAACTCCCACCA
ACACTTTGGAACTCAACAAGCGCATCCTGCCACCAAACTGTCGCTGGATG
GAGGACTCTTTCCAGATGAGCACTATTCCCTCATTTCCGGAGCACAGGAA
CCACCACAACCGGGTCTTCGGAGGCTTCCTCATGCGAAGTGCCCTGGAGA
TAAGCTGGGCAGCAGCCTACCTCTACTGCAAAACGCGACCCAAGCTGGAG
CACATATCCGACATCAGCTTCGAGAAGCCCGTCAGCGTGAACAGCTTCAT
CAAGATGACCGCCTATGTGGTGTACACCAAGGAGAACTACGTGCAGATCA
TGACCGTTGCAGATGTGATGGACCCACAAACGGGCAGCCAGGTGACCACC
AACACGTTCTACTACACCTTCTCGTCTCCGGACACGGTTACCGAGGTGCT
GCCCCGCTCCTACCACGAAACCATGTGGTACATCCAAGGTCGTCGAAAGT
TCGAGGCCAGCATGGGCCCAGTGTAGACATGGTTCAGCCTGTGATTGTTA
CTCAAGATATTATGCAAGGCTATCCTACCAGATAAATGCAATTACCAGTT
CAGTGTTTACAAAAAGCAATAAATGTCTGTTGTTTAATGATGTGCTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD44914.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-RA 1755 CG1635-RA 127..1625 1..1499 7495 100 Plus
CG1638-RB 1657 CG1638-RB 972..1413 921..1362 1235 85.2 Plus
CG1638-RB 1657 CG1638-RB 477..612 423..558 305 81.6 Plus
CG1638-RB 1657 CG1638-RB 621..703 567..649 280 89.1 Plus
CG1638-RB 1657 CG1638-RB 739..901 685..847 275 77.9 Plus
CG1638-RB 1657 CG1638-RB 252..419 198..365 240 76.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27411711..27412758 450..1497 5210 99.8 Plus
chr3R 27901430 chr3R 27413567..27414476 450..1362 1710 79.6 Plus
chr3R 27901430 chr3R 27411409..27411652 207..450 1220 100 Plus
chr3R 27901430 chr3R 27411090..27411226 1..137 685 100 Plus
chr3R 27901430 chr3R 27411286..27411356 137..207 355 100 Plus
chr3R 27901430 chr3R 27413264..27413422 207..365 225 76.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31589345..31590394 450..1499 5250 100 Plus
3R 32079331 3R 31591201..31592110 450..1362 1710 79.6 Plus
3R 32079331 3R 31589043..31589286 207..450 1220 100 Plus
3R 32079331 3R 31588724..31588860 1..137 685 100 Plus
3R 32079331 3R 31588920..31588990 137..207 355 100 Plus
3R 32079331 3R 31590898..31591056 207..365 225 76.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31330176..31331225 450..1499 5250 100 Plus
3R 31820162 3R 31332500..31332941 921..1362 1235 85.2 Plus
3R 31820162 3R 31329874..31330117 207..450 1220 100 Plus
3R 31820162 3R 31329555..31329691 1..137 685 100 Plus
3R 31820162 3R 31329751..31329821 137..207 355 100 Plus
3R 31820162 3R 31332149..31332231 567..649 280 89.1 Plus
3R 31820162 3R 31332267..31332429 685..847 275 77.9 Plus
3R 31820162 3R 31332032..31332140 450..558 230 80.7 Plus
3R 31820162 3R 31331729..31331887 207..365 225 76.1 Plus
3R 31820162 3R 31334860..31334952 867..959 150 77.4 Plus
Blast to na_te.dros performed 2019-03-16 12:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 2707..2754 265..312 132 75 Plus

LD44914.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:07:59 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27411090..27411225 1..136 100 -> Plus
chr3R 27411286..27411356 137..207 100 -> Plus
chr3R 27411410..27411652 208..450 100 -> Plus
chr3R 27411712..27412758 451..1497 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:08 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 1..1347 30..1376 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:02 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 1..1347 30..1376 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:51:45 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 1..1347 30..1376 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:25 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 1..1347 30..1376 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:42 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 1..1347 30..1376 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:02 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 57..1550 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:02 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 57..1550 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:51:45 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 57..1550 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:25 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 57..1550 1..1494 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:42 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
CG1635-RA 52..1548 1..1497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:07:59 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31589044..31589286 208..450 100 -> Plus
3R 31589346..31590392 451..1497 100   Plus
3R 31588724..31588859 1..136 100 -> Plus
3R 31588920..31588990 137..207 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:07:59 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31589044..31589286 208..450 100 -> Plus
3R 31589346..31590392 451..1497 100   Plus
3R 31588724..31588859 1..136 100 -> Plus
3R 31588920..31588990 137..207 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:07:59 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31589044..31589286 208..450 100 -> Plus
3R 31589346..31590392 451..1497 100   Plus
3R 31588724..31588859 1..136 100 -> Plus
3R 31588920..31588990 137..207 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:51:45 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27414446..27414581 1..136 100 -> Plus
arm_3R 27414642..27414712 137..207 100 -> Plus
arm_3R 27414766..27415008 208..450 100 -> Plus
arm_3R 27415068..27416114 451..1497 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:43 Download gff for LD44914.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31329875..31330117 208..450 100 -> Plus
3R 31330177..31331223 451..1497 100   Plus
3R 31329555..31329690 1..136 100 -> Plus
3R 31329751..31329821 137..207 100 -> Plus

LD44914.pep Sequence

Translation from 29 to 1375

> LD44914.pep
MMRSLIGAQKCWGLIRTRNFMELPTKQVPASFALFKRHYSPPTHIKQSAV
ANESGTMAEVKQGMMKRLGLEPGYNPLPKSREQLLKYQPKLEDLPPRAMQ
DSFTSAIIPLSTDRSLQDKYVTYLGNVRFGRLLEDMDLFAAWCCHKHLVL
PNLPEGVHLPYTFVTILVDRIDFTNVLASGTQDIRLSGHVSWVGTSSIEV
VVWLEQMVGGRYQKLTRALFLMAARNANNTGAAPVNPLQPANEEEKVILA
GGADRKKKRQILCAQSIFKVEPNDPEQTIMYELYKRTTPTNTLELNKRIL
PPNCRWMEDSFQMSTIPSFPEHRNHHNRVFGGFLMRSALEISWAAAYLYC
KTRPKLEHISDISFEKPVSVNSFIKMTAYVVYTKENYVQIMTVADVMDPQ
TGSQVTTNTFYYTFSSPDTVTEVLPRSYHETMWYIQGRRKFEASMGPV*

LD44914.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22971-PA 448 GF22971-PA 1..447 1..447 2067 84.3 Plus
Dana\GF22972-PA 464 GF22972-PA 50..443 52..445 1103 51.1 Plus
Dana\GF15441-PA 449 GF15441-PA 31..416 52..442 888 44.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11815-PA 448 GG11815-PA 1..448 1..448 2211 89.7 Plus
Dere\GG11816-PA 382 GG11816-PA 1..382 64..446 1551 75.5 Plus
Dere\GG11817-PA 472 GG11817-PA 56..450 52..445 1141 50.6 Plus
Dere\GG23601-PA 436 GG23601-PA 34..423 46..442 900 43.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18638-PA 448 GH18638-PA 1..444 1..446 1991 81.7 Plus
Dgri\GH18639-PA 422 GH18639-PA 13..405 54..446 1120 50.8 Plus
Dgri\GH13347-PA 459 GH13347-PA 53..439 54..443 1028 47.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-PA 448 CG1635-PA 1..448 1..448 2362 100 Plus
CG1638-PB 443 CG1638-PB 16..441 5..444 1602 69.5 Plus
CG1774-PB 472 CG1774-PB 13..445 6..440 1115 46.9 Plus
CG1774-PA 472 CG1774-PA 13..445 6..440 1115 46.9 Plus
CG13771-PA 451 CG13771-PA 40..425 52..441 830 42.4 Plus
CG13771-PB 184 CG13771-PB 40..128 52..140 208 46.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23398-PA 442 GI23398-PA 1..436 1..446 1884 78.3 Plus
Dmoj\GI23399-PA 438 GI23399-PA 11..406 52..446 1059 49.2 Plus
Dmoj\GI17734-PA 407 GI17734-PA 1..383 57..443 1005 45.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23635-PA 449 GL23635-PA 1..447 1..446 2061 83.4 Plus
Dper\GL23636-PA 470 GL23636-PA 55..447 54..445 1164 52.7 Plus
Dper\GL26200-PA 410 GL26200-PA 20..405 52..443 932 45.9 Plus
Dper\GL26203-PA 313 GL26203-PA 1..308 99..443 640 40.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26673-PA 449 GA26673-PA 1..447 1..446 2057 83.4 Plus
Dpse\GA26674-PA 470 GA26674-PA 55..447 54..445 1168 52.9 Plus
Dpse\GA28071-PA 410 GA28071-PA 20..405 52..443 927 45.7 Plus
Dpse\GA27991-PA 321 GA27991-PA 2..316 123..443 734 45.8 Plus
Dpse\GA28073-PA 269 GA28073-PA 25..266 84..331 558 45.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16432-PA 448 GM16432-PA 1..448 1..448 2399 98.4 Plus
Dsec\GM16434-PA 389 GM16434-PA 1..387 57..444 1557 76 Plus
Dsec\GM16435-PA 472 GM16435-PA 19..450 12..445 1143 47.5 Plus
Dsec\GM14023-PA 452 GM14023-PA 25..425 37..441 846 41.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21587-PA 448 GD21587-PA 1..448 1..448 2409 98.9 Plus
Dsim\GD21588-PA 399 GD21588-PA 1..390 57..444 1537 75.2 Plus
Dsim\GD22557-PA 452 GD22557-PA 25..425 37..441 852 41.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23089-PA 455 GJ23089-PA 1..451 1..446 1971 82 Plus
Dvir\GJ23090-PA 427 GJ23090-PA 13..406 54..446 1125 51.5 Plus
Dvir\GJ17560-PA 465 GJ17560-PA 56..442 54..443 1088 49.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11721-PA 453 GK11721-PA 1..451 1..446 1973 83.8 Plus
Dwil\GK11722-PA 468 GK11722-PA 49..442 54..446 1166 52.8 Plus
Dwil\GK15457-PA 462 GK15457-PA 47..434 54..445 1029 46.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10948-PA 448 GE10948-PA 1..448 1..448 2329 94.4 Plus
Dyak\GE10950-PA 382 GE10950-PA 1..382 64..446 1602 78.6 Plus
Dyak\GE10951-PA 473 GE10951-PA 57..451 52..445 1152 50.9 Plus
Dyak\GE18421-PA 442 GE18421-PA 39..422 51..441 837 41.3 Plus

LD44914.hyp Sequence

Translation from 29 to 1375

> LD44914.hyp
MMRSLIGAQKCWGLIRTRNFMELPTKQVPASFALFKRHYSPPTHIKQSAV
ANESGTMAEVKQGMMKRLGLEPGYNPLPKSREQLLKYQPKLEDLPPRAMQ
DSFTSAIIPLSTDRSLQDKYVTYLGNVRFGRLLEDMDLFAAWCCHKHLVL
PNLPEGVHLPYTFVTILVDRIDFTNVLASGTQDIRLSGHVSWVGTSSIEV
VVWLEQMVGGRYQKLTRALFLMAARNANNTGAAPVNPLQPANEEEKVILA
GGADRKKKRQILCAQSIFKVEPNDPEQTIMYELYKRTTPTNTLELNKRIL
PPNCRWMEDSFQMSTIPSFPEHRNHHNRVFGGFLMRSALEISWAAAYLYC
KTRPKLEHISDISFEKPVSVNSFIKMTAYVVYTKENYVQIMTVADVMDPQ
TGSQVTTNTFYYTFSSPDTVTEVLPRSYHETMWYIQGRRKFEASMGPV*

LD44914.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1635-PA 448 CG1635-PA 1..448 1..448 2362 100 Plus
CG1638-PB 443 CG1638-PB 16..441 5..444 1602 69.5 Plus
CG1774-PB 472 CG1774-PB 13..445 6..440 1115 46.9 Plus
CG1774-PA 472 CG1774-PA 13..445 6..440 1115 46.9 Plus
CG13771-PA 451 CG13771-PA 40..425 52..441 830 42.4 Plus