Clone LD44919 Report

Search the DGRC for LD44919

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:449
Well:19
Vector:pOT2
Associated Gene/TranscriptCG8950-RA
Protein status:LD44919.pep: gold
Preliminary Size:2919
Sequenced Size:2730

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8950 2001-01-01 Release 2 assignment
CG8950 2002-05-25 Blastp of sequenced clone
CG8950 2003-01-01 Sim4 clustering to Release 3
CG8950 2008-04-29 Release 5.5 accounting
CG8950 2008-08-15 Release 5.9 accounting
CG8950 2008-12-18 5.12 accounting

Clone Sequence Records

LD44919.complete Sequence

2730 bp (2730 high quality bases) assembled on 2002-05-25

GenBank Submission: AY118586

> LD44919.complete
ATTTGTTTACAAAATAAAATTGGCGGAAATGGCCGATTCAGATTCGAATG
AGGTCCTAATTGAGGAAATAGACAGCAACGATGTGCCGGAAAACGAATTG
GAGCAGTTCCAGGAGACAGAGCCGCTGCGCGTGGTAGACATCATCGACTG
CGATACAGACGGCGAACGGCGCTGCATCGCTGATGACGAGGAGGAGGGTG
CGCTGATTAAGCGCTACGTGCAGGGTGTTCAGTGCCTAGAGTTCCCGGAC
TTCTGCACCAAGCTGGAGGCCAGCGACGAGGATGAGGAGGGCAATGATGA
GGAGCCCAGTGAGGCGGCCGGCAGCATCGAGAAGCCGAACACTTCGGCGC
AAGCGAAAACGTCACAGGAACAGTCGACGGGAAGTGGTCGTTCTGGAGGA
GGTGGCTTTCGGAAAAGCCAACTAAGCACCGCCCTGCAAGGACTGATGGG
CGAGGCCAATCTGAGCTTTGTGTACGGCCGCTATGAAACAGCCGAGCGCA
TCTGCATGGAGATCATCCGACAGAATCCACTGGCCAGTGAACCGTTTTAC
ACGCTGGCCGAGATTTATGAGAACCGTGATGAGGTCAAGTTCCTGAACTT
CTCCACATTGGCGGCCCACTTGAATCCCCAGGACCGAGACATGTGGATAC
GTGTCTCCGATCTGCTGGTGCAGCAGGGCAACTTGGCCCGTGCGCGTCTC
ATCTACACGAAGGCCATCAAAATGCTGCCCAAAGTGTACCAGCTTCGGCT
GCGTAAGGCGCAGCTGTTGCAAAAAATGGGCGAAACCAATGCCTCCATGT
TTACGTACTTGAAAATGCTGCCACTGATGCCCCCAGATGAGTGGAAAATG
TGCCTGAATACGGCCAAGAACGTAGCCCGATACTTTCATGTGCTGGAGAA
GCACTCGCTTGCCCTAGAGGCCATGGAGGGGGCGTACAGTGTGTGTGGTG
CGCGATTCACCCTGGAGGATATAAACATCTACTTGGAACTGCTGATCCTA
AATAAACAGTATGCCAAGGTTCTGCGGTGCCTGCGAGAGCGCACCAATTT
TGAGCTGGAGAACGACCAAGAGGAGAGTCTGGAACTTATATACTTCTGCG
AGATCCCAGATGACTATGTCCCCGAGCTGCGGGCCAAGCTCTGCGTCAGT
CTCATCCACATGCGGGCCCACCATTTGCTGGGCTATCTTATCCAGAATGT
CCAAGAGCACATCACATTGACGGCGGATAGAGTCGAGCTATACATGGACA
TCACCGAGGCTTTGATGCAGGAGCACAAGTATGCCGAAGCCATTGCGCTG
ATGAGTCCCATAACCGATGGCGACACCGTAGAGTGTCCGGCATTCGTGTG
GCTGCGGCAGGCCGAGTGTCTTCGCCAGCTGAACCGAACCAACGAGGCCA
TTCAGAGCTACGAGAAGGTAGTGCAACTGGCGCCCTTCTGCTACGACGCG
CGGTTCACCCTCTCCGCTCTGCTAAAACAGCAAGGCCGGCACGAGGAGGC
TGTCCAGGCATTGGAGCAACCGGGAGAGGCTGAGGGCCAGCCTCTTATTG
CCCGCCTGCTGTATGAGAGATGTGTAATGCTACAGCAGATTGGGCGCATT
GAGGAGTTCTTGGATGTGGGATATGCCCTGCTCAGTCGGCACTCCATCAA
GTTGTACAACCGCGAGGAGATGATGGCGGCCGCAAATGGAGGCAGTGCTT
ACAATTCGGAGAGCCTCAAGACCATCATCCAAATGAGGAGCAAGGCGGTT
GACAACTCTGCGGAGCAGGATCTTCAGGATCCTGCTAAAAATGCCGCCAG
CGAAACCTCCGATCTGACCGTCAAAGATGAATTTGAGCTCTTTCGGGAGC
TTGTGCGTACGGCTTTCAAGCATGGCATGCACAGCGCCGCTGAGAAGATC
TGCTTTGCCATGGTTACAACAAAAAGATTCACCTACTACCATCACGAGAT
CGAGAGAATTATGGTACTAACCTGCTACTACAACGACGACTGTGCCATAG
CCTTCTCGTATCTGCGTGAGCTGATCGCCAAACAGCCCAGCCAGACAACG
CTGTGGAACATGCTATCTCTGATGATTCAAAAGGGTGACGAAGTGCGTTA
TTATCGCTATATGCGCCGCCTGATGCAACGACATCCGGTCGATACCAAGC
CGATGCGAATATTCCAGGGCCATTATCACCTCAACTGCGCATCTTTTAAG
TATGCTCTAAACATCTACATGCCCATTCTGCGCGAGAATCCCGATCCCCT
GGTGGCCCTCTGCATAGCCGTTGCCTTTAACCAGCTGTCGCTGCAGAAGA
AGGTGCTCCGCAAGTCGGCTTCTGTGGCCCAAGCCGTGGCCTTTGGCCAG
CGCTACAAGGAGTTACGATCTGCCGGCCATGAGTTAGCAGATTGCGCCGC
ACAGCAGGAGATCTTTTACAACATCGGACGTATCTATCACCAAGCCAACA
TCCTTCACCTGGCCGTGGACTACTATGAAAAGGCACTGGCCGTGCCCGTG
CATCCACTTATCGCAGAGCATGAATCTACGCTTGGTCTGCAGCATGAAGT
GGCATTCAACCTGCACCTCATCTACCGAGCCAATGGAAACAAGTGGAAGG
CACGGCAATATTTAATGCGATACTGTGTGGTTTAATCAGCGGCGTGAATT
AATTTGTTACTCGACTGTTAGTTTTAATTATTGTAAATATATTTCTTTAT
TTTCACGTTAAAAAAAAAAAAAAAAAAAAA

LD44919.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8950-RA 2844 CG8950-RA 48..2758 1..2712 13520 99.9 Plus
CG8950.a 3268 CG8950.a 21..2731 1..2712 13520 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12948057..12949834 1778..1 8890 100 Minus
chr2R 21145070 chr2R 12947071..12948003 2709..1776 4620 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17060857..17062634 1778..1 8890 100 Minus
2R 25286936 2R 17059868..17060803 2712..1776 4635 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17062056..17063833 1778..1 8890 100 Minus
2R 25260384 2R 17061067..17062002 2712..1776 4645 99.8 Minus
Blast to na_te.dros performed 2019-03-16 20:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dhyd\Bungy 227 Dhyd\Bungy DH14600 227bp Derived from U14600 (Rel. 63, Last updated, Version 2). 56..121 2708..2644 120 66.7 Minus

LD44919.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:43:54 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12947071..12948001 1778..2709 99 <- Minus
chr2R 12948058..12949834 1..1777 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:09 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2607 29..2635 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:18 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2607 29..2635 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:05 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2607 29..2635 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:54 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2607 29..2635 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:59 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2607 29..2635 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:09:44 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2708 1..2709 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:18 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2708 1..2709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:05 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2708 1..2709 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:54 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2708 1..2709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:59 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
CG8950-RA 1..2708 1..2709 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:54 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17059871..17060801 1778..2709 99 <- Minus
2R 17060858..17062634 1..1777 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:54 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17059871..17060801 1778..2709 99 <- Minus
2R 17060858..17062634 1..1777 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:54 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17059871..17060801 1778..2709 99 <- Minus
2R 17060858..17062634 1..1777 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:05 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12947376..12948306 1778..2709 99 <- Minus
arm_2R 12948363..12950139 1..1777 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:01:29 Download gff for LD44919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17061070..17062000 1778..2709 99 <- Minus
2R 17062057..17063833 1..1777 100   Minus

LD44919.hyp Sequence

Translation from 0 to 2634

> LD44919.hyp
FVYKIKLAEMADSDSNEVLIEEIDSNDVPENELEQFQETEPLRVVDIIDC
DTDGERRCIADDEEEGALIKRYVQGVQCLEFPDFCTKLEASDEDEEGNDE
EPSEAAGSIEKPNTSAQAKTSQEQSTGSGRSGGGGFRKSQLSTALQGLMG
EANLSFVYGRYETAERICMEIIRQNPLASEPFYTLAEIYENRDEVKFLNF
STLAAHLNPQDRDMWIRVSDLLVQQGNLARARLIYTKAIKMLPKVYQLRL
RKAQLLQKMGETNASMFTYLKMLPLMPPDEWKMCLNTAKNVARYFHVLEK
HSLALEAMEGAYSVCGARFTLEDINIYLELLILNKQYAKVLRCLRERTNF
ELENDQEESLELIYFCEIPDDYVPELRAKLCVSLIHMRAHHLLGYLIQNV
QEHITLTADRVELYMDITEALMQEHKYAEAIALMSPITDGDTVECPAFVW
LRQAECLRQLNRTNEAIQSYEKVVQLAPFCYDARFTLSALLKQQGRHEEA
VQALEQPGEAEGQPLIARLLYERCVMLQQIGRIEEFLDVGYALLSRHSIK
LYNREEMMAAANGGSAYNSESLKTIIQMRSKAVDNSAEQDLQDPAKNAAS
ETSDLTVKDEFELFRELVRTAFKHGMHSAAEKICFAMVTTKRFTYYHHEI
ERIMVLTCYYNDDCAIAFSYLRELIAKQPSQTTLWNMLSLMIQKGDEVRY
YRYMRRLMQRHPVDTKPMRIFQGHYHLNCASFKYALNIYMPILRENPDPL
VALCIAVAFNQLSLQKKVLRKSASVAQAVAFGQRYKELRSAGHELADCAA
QQEIFYNIGRIYHQANILHLAVDYYEKALAVPVHPLIAEHESTLGLQHEV
AFNLHLIYRANGNKWKARQYLMRYCVV*

LD44919.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8950-PB 868 CG8950-PB 1..868 10..877 4492 100 Plus
CG8950-PA 868 CG8950-PA 1..868 10..877 4492 100 Plus

LD44919.pep Sequence

Translation from 28 to 2634

> LD44919.pep
MADSDSNEVLIEEIDSNDVPENELEQFQETEPLRVVDIIDCDTDGERRCI
ADDEEEGALIKRYVQGVQCLEFPDFCTKLEASDEDEEGNDEEPSEAAGSI
EKPNTSAQAKTSQEQSTGSGRSGGGGFRKSQLSTALQGLMGEANLSFVYG
RYETAERICMEIIRQNPLASEPFYTLAEIYENRDEVKFLNFSTLAAHLNP
QDRDMWIRVSDLLVQQGNLARARLIYTKAIKMLPKVYQLRLRKAQLLQKM
GETNASMFTYLKMLPLMPPDEWKMCLNTAKNVARYFHVLEKHSLALEAME
GAYSVCGARFTLEDINIYLELLILNKQYAKVLRCLRERTNFELENDQEES
LELIYFCEIPDDYVPELRAKLCVSLIHMRAHHLLGYLIQNVQEHITLTAD
RVELYMDITEALMQEHKYAEAIALMSPITDGDTVECPAFVWLRQAECLRQ
LNRTNEAIQSYEKVVQLAPFCYDARFTLSALLKQQGRHEEAVQALEQPGE
AEGQPLIARLLYERCVMLQQIGRIEEFLDVGYALLSRHSIKLYNREEMMA
AANGGSAYNSESLKTIIQMRSKAVDNSAEQDLQDPAKNAASETSDLTVKD
EFELFRELVRTAFKHGMHSAAEKICFAMVTTKRFTYYHHEIERIMVLTCY
YNDDCAIAFSYLRELIAKQPSQTTLWNMLSLMIQKGDEVRYYRYMRRLMQ
RHPVDTKPMRIFQGHYHLNCASFKYALNIYMPILRENPDPLVALCIAVAF
NQLSLQKKVLRKSASVAQAVAFGQRYKELRSAGHELADCAAQQEIFYNIG
RIYHQANILHLAVDYYEKALAVPVHPLIAEHESTLGLQHEVAFNLHLIYR
ANGNKWKARQYLMRYCVV*

LD44919.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13427-PA 855 GF13427-PA 2..855 3..868 3845 84.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22221-PA 869 GG22221-PA 1..869 1..868 4547 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20885-PA 906 GH20885-PA 13..906 3..868 3307 73.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8950-PB 868 CG8950-PB 1..868 1..868 4492 100 Plus
CG8950-PA 868 CG8950-PA 1..868 1..868 4492 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18897-PA 902 GI18897-PA 14..902 5..868 3387 73.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10554-PA 867 GL10554-PA 1..867 1..868 3638 79.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21430-PA 867 GA21430-PA 1..867 1..868 3646 80 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20009-PA 868 GM20009-PA 1..868 1..868 4642 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25498-PA 868 GD25498-PA 1..868 1..868 4651 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20720-PA 916 GJ20720-PA 14..916 5..868 3353 72.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17935-PA 908 GK17935-PA 10..908 3..868 3321 72.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14218-PA 869 GE14218-PA 1..869 1..868 4573 97.6 Plus