Clone LD44960 Report

Search the DGRC for LD44960

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:449
Well:60
Vector:pOT2
Associated Gene/TranscriptMsr-110-RB
Protein status:LD44960.pep: gold
Preliminary Size:2779
Sequenced Size:2479

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10596 2001-01-01 Release 2 assignment
CG10596 2002-05-20 Blastp of sequenced clone
CG10596 2003-01-01 Sim4 clustering to Release 3
Msr-110 2008-04-29 Release 5.5 accounting
Msr-110 2008-08-15 Release 5.9 accounting
Msr-110 2008-12-18 5.12 accounting

Clone Sequence Records

LD44960.complete Sequence

2479 bp (2479 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118587

> LD44960.complete
TACAACAAAGACGTAGTAATCCAAAGTTTCCAGAGGCCCAAAAGTCTCCC
TGCTGAAAAGTTGGTCAGGCAACTTTTTCAAAAACCAACAAGACCGCTGA
AAAATAAATCGTACAACGAAATTCCTCTTACTTTTTGTCGAATTTTTGGA
AAATCCTCTACTGCTATAGATGACCGAGAAGGATACCGTCTCGATGGCTA
CCGTGCAAATGAAGCCCGACTATGCGGCTAGCGAGGTCTACAGCACCGCC
AGCGAACCGCCACCGGCCTACAAGCGCCAGGCGAATTCGGTGAAAATCGC
CAAGATCACCGCCTTCACCATCATCGTGTCAGCCTTCATCCTGGGATCCT
TCATCCTGGCCTCCTCCTACCTGCAGGCCAAGGCCTCGTGCGATCAGGTC
CAGGCCCTCGACTCGGTGCTGGAAAAGGAGCTAATGCTTGAGACTTTGCA
GCAGGTGGGCAAGGAACTTCCCCGTGCTGAACCCCTGCTGGGAGGAGCTG
CTGGAGCTGCCGATGACTCCGAACTGCAGAGCTTGGAGCCGGAAAGTCGT
AAGACTGAAGCCACCCAGGATGCCGAGGAGCACCCCGACAAGGACAACTC
CTACTCCGACAGCGATGAGACCGATGAGCTGCAGAAGTTCCCCGGCAAGA
TGCCACTCGAGCTGGACTTGAGTGACCTGGCTGCCGCCATTCTGCGCAAC
AACAAGAAATCCCGCATGAACTGTGTGGTGGAGCGCAAGCACGCCGAGGA
GATTGTCGACTCGCCCTCGAAGACGGTAGCCCTGCCCTTCGGAGTCAACC
TGACCACGGATCCCAAGAAGGCACGCATCACCGGCGAGCGGATCTCGATC
TTCTGCGACGGCGGCGACGACAAGGATAAGGAGGAGAAGGAGGCCAAGCG
CCAGCGGGAGCAGGAGGAGGAGGACTCCGATGAGGATGCCGAGCCGCTGA
GGCCCATGTTCATTCCCTTCCAGCGAGTGCCCATTCCCTTCGGACGCATT
CCCGACCAGATGCCGCTGACCCATATGCCCCAGAGGATGATGCCACCAGC
CATGCAGATGCAACAGCAATTGCCCCAGCAGCAACAGCAGGGACCCATCA
TCATCCGCCAGCTGCCACCTCCGTTCCAGCACCTGCCCATGCGTCCTCCC
ATGCCGCCACAGGTGATGCAGGCGCCTCGCATGGAGTCCTCCGAGGAAAT
GCAGATGCCCAAGGTCCAGACCGTGCGCATTCACATGCAGCAGATCCCCT
TCCGTGAGATCCATGTGGCCGACGATGTGCCCGTCCAGATCCCCGCCCAG
CAGCAACGTCTGGAGATGCAGCAACGTCAGGAGATGCAACAGCGCCAGGA
GATGCAGCAGCGCCATGAGATGCAGCAGCGCCAGGAGATGCAGCAGCGTC
ATGAGATGCAGCAGCGCCAGGAGCAGCGTGAGATCCCCCAGATTCAGATC
CAGCCCATGCCCTTCGGAATGGCCCTGCAGCGCGTTGGCATCACCGCCGA
GGATCTGAGGAACATCCAGCGCATGGCCGAGGATCGCATCACCGACGAGC
TGCGTCGTCTGGCCGCCGAGGAGGGTGCGGAATCCAGTGAGGGCAGCGAC
GAAGATGTCTCCAGCTCCGCCGAGCAGGCCACCACCGAGGCACAGACCAC
GGTGCCCCAGCAGCAGCAGCAACAGACCGTCCAGCCTGAGCAACAGCATC
CAGAGGAACAGCACCAGGAAGTCAGCCAGGAGCGACAGGAGCAGCAGCAG
CAGCAGGTGCCCCAGATGCGCATTCAGCGTTTGATCCTGCAGCCCCTGCC
TGAGCAGCCCCGTGACACCATGACCCCGCCGATGCCCGACCAGCCGCAGC
AGCTGCCCTTCGGCCGCATGGTCTACGGACGCAGTCTCGCTCAGCCCGTC
CGCATCCCGGTGCCCATGATGCAGGCCATGGAGGGAGGAGCTGCTGCCCC
CGAAGAGTCCCAGCGACCACACTTCGTCCAGCCTCGTTCCGTTTAAGTAA
CAAGAAGACCACGCCTGTGATTGCTGCTGTGCGAATCGAATCTCGACGAG
GGTGTAGACCGAGAGGAACTAGAAGAAGGAGTCATCATGTACCCAACTAA
ACCCGAAGAATCTAAGATTGTAACCGAATCGTCTCGATTTGTTTTGTAAT
TAAAGCAGCTTAAAAGAAAAAGTAAAAACCAAAACTAATCAACAAGTTTT
AAAACATGCCTTTCTACCATATTTGGCCTTCTTCAAAAAACGTATTCTCT
ATATATCATTTTTGTATATTTTATATTAATGCGTGTATAACATTCCAACC
AACCAACCAACAACAACAACTAGAACACAGAAAGCAATCGCTTGTGAAAA
AGAAAATTGTGAAAGTTTTCCAAGTATTTTTCTTTCAGTTTTTTGAATTG
TCTACAGTTTTGTTTTTCACAAATACACACAAATAAATCCGATGGAAATT
TTTGTACATAAAAAAAAAAAAAAAAAAAA

LD44960.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Msr-110-RB 3039 Msr-110-RB 364..2825 1..2462 12310 100 Plus
Msr-110-RA 2956 Msr-110-RA 545..2742 265..2462 10990 100 Plus
Msr-110.a 2704 Msr-110.a 490..2490 462..2462 10005 100 Plus
Msr-110.a 2704 Msr-110.a 38..492 1..455 2275 100 Plus
Msr-110-RA 2956 Msr-110-RA 254..518 1..265 1325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5560323..5561581 1973..709 6185 99.4 Minus
chr3L 24539361 chr3L 5559709..5560194 2459..1974 2415 99.8 Minus
chr3L 24539361 chr3L 5561702..5561948 708..462 1235 100 Minus
chr3L 24539361 chr3L 5566217..5566416 464..265 955 98.5 Minus
chr3L 24539361 chr3L 5569739..5569899 161..1 790 99.4 Minus
chr3L 24539361 chr3L 5569425..5569529 266..162 525 100 Minus
chr3L 24539361 chr3L 5560867..5560942 1387..1312 305 93.4 Minus
chr3L 24539361 chr3L 5560867..5560936 1369..1300 200 85.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
snmRNA:357-RA 77 CR33659-RA 1..77 1744..1820 385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5567732..5568996 1973..709 6325 100 Minus
3L 28110227 3L 5567115..5567603 2462..1974 2445 100 Minus
3L 28110227 3L 5569117..5569363 708..462 1235 100 Minus
3L 28110227 3L 5573631..5573830 464..265 1000 100 Minus
3L 28110227 3L 5577151..5577311 161..1 805 100 Minus
3L 28110227 3L 5576837..5576941 266..162 525 100 Minus
3L 28110227 3L 5568282..5568357 1387..1312 305 93.4 Minus
3L 28110227 3L 5568282..5568351 1369..1300 200 85.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5560832..5562096 1973..709 6325 100 Minus
3L 28103327 3L 5560215..5560703 2462..1974 2445 100 Minus
3L 28103327 3L 5562217..5562463 708..462 1235 100 Minus
3L 28103327 3L 5566731..5566930 464..265 1000 100 Minus
3L 28103327 3L 5570251..5570411 161..1 805 100 Minus
3L 28103327 3L 5569937..5570041 266..162 525 100 Minus
Blast to na_te.dros performed 2019-03-15 19:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6854 1297..1427 267 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6716..6924 1642..1854 262 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6856 1654..1765 237 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6996 1654..1851 226 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6878 1654..1769 214 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2793..2914 1298..1422 213 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2838..2970 1292..1427 195 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2315..2508 1654..1856 193 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6858 1658..1755 192 69.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2280..2449 1581..1764 184 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6957 1658..1761 166 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2880 1298..1769 157 52.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6823..6924 1654..1758 157 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2837..2967 1654..1778 154 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2402..2511 1654..1760 146 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6857 1054..1133 138 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6821 1054..1118 135 71.2 Plus
roo 9092 roo DM_ROO 9092bp 1053..1163 1628..1742 133 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2549 1658..1746 129 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6818 1054..1136 126 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6893 1044..1133 126 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6914 1056..1136 124 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1058..1151 1041..1133 124 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2415 1044..1136 119 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2357..2421 1054..1118 117 68.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3283..3347 1053..1117 117 68.2 Plus
roo 9092 roo DM_ROO 9092bp 1095..1141 1045..1090 115 74.5 Plus

LD44960.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:52:36 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5559709..5560194 1974..2459 99 <- Minus
chr3L 5560323..5560539 1757..1973 100 == Minus
chr3L 5560633..5560862 1428..1657 100 == Minus
chr3L 5560993..5561581 709..1297 100 <- Minus
chr3L 5561702..5561946 464..708 100 <- Minus
chr3L 5566218..5566415 266..463 98 <- Minus
chr3L 5569426..5569529 162..265 100 <- Minus
chr3L 5569739..5569899 1..161 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:37:11 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 1..1827 170..1996 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:41 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 1..1827 170..1996 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:02:50 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 1..1827 170..1996 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:23 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 1..1827 170..1996 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:13 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 1..1827 170..1996 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:40:50 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
snmRNA:357-RA 1..77 1744..1820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:37:11 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 38..2496 1..2459 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:41 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 38..2496 1..2459 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:50 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 38..2496 1..2459 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:23 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 38..2496 1..2459 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:13 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
Msr-110-RB 38..2496 1..2459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:36 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5569117..5569361 464..708 100 <- Minus
3L 5573632..5573829 266..463 100 <- Minus
3L 5576838..5576941 162..265 100 <- Minus
3L 5577151..5577311 1..161 100   Minus
3L 5567118..5567603 1974..2459 100 <- Minus
3L 5567732..5568996 709..1973 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:36 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5569117..5569361 464..708 100 <- Minus
3L 5573632..5573829 266..463 100 <- Minus
3L 5576838..5576941 162..265 100 <- Minus
3L 5577151..5577311 1..161 100   Minus
3L 5567118..5567603 1974..2459 100 <- Minus
3L 5567732..5568996 709..1973 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:36 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5569117..5569361 464..708 100 <- Minus
3L 5573632..5573829 266..463 100 <- Minus
3L 5576838..5576941 162..265 100 <- Minus
3L 5577151..5577311 1..161 100   Minus
3L 5567118..5567603 1974..2459 100 <- Minus
3L 5567732..5568996 709..1973 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:50 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5560218..5560703 1974..2459 100 <- Minus
arm_3L 5560832..5562096 709..1973 100 <- Minus
arm_3L 5562217..5562461 464..708 100 <- Minus
arm_3L 5566732..5566929 266..463 100 <- Minus
arm_3L 5569938..5570041 162..265 100 <- Minus
arm_3L 5570251..5570411 1..161 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:58 Download gff for LD44960.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5570251..5570411 1..161 100   Minus
3L 5562217..5562461 464..708 100 <- Minus
3L 5566732..5566929 266..463 100 <- Minus
3L 5569938..5570041 162..265 100 <- Minus
3L 5560218..5560703 1974..2459 100 <- Minus
3L 5560832..5562096 709..1973 100 <- Minus

LD44960.pep Sequence

Translation from 169 to 1995

> LD44960.pep
MTEKDTVSMATVQMKPDYAASEVYSTASEPPPAYKRQANSVKIAKITAFT
IIVSAFILGSFILASSYLQAKASCDQVQALDSVLEKELMLETLQQVGKEL
PRAEPLLGGAAGAADDSELQSLEPESRKTEATQDAEEHPDKDNSYSDSDE
TDELQKFPGKMPLELDLSDLAAAILRNNKKSRMNCVVERKHAEEIVDSPS
KTVALPFGVNLTTDPKKARITGERISIFCDGGDDKDKEEKEAKRQREQEE
EDSDEDAEPLRPMFIPFQRVPIPFGRIPDQMPLTHMPQRMMPPAMQMQQQ
LPQQQQQGPIIIRQLPPPFQHLPMRPPMPPQVMQAPRMESSEEMQMPKVQ
TVRIHMQQIPFREIHVADDVPVQIPAQQQRLEMQQRQEMQQRQEMQQRHE
MQQRQEMQQRHEMQQRQEQREIPQIQIQPMPFGMALQRVGITAEDLRNIQ
RMAEDRITDELRRLAAEEGAESSEGSDEDVSSSAEQATTEAQTTVPQQQQ
QQTVQPEQQHPEEQHQEVSQERQEQQQQQVPQMRIQRLILQPLPEQPRDT
MTPPMPDQPQQLPFGRMVYGRSLAQPVRIPVPMMQAMEGGAAAPEESQRP
HFVQPRSV*

LD44960.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10457-PA 586 GF10457-PA 1..586 1..608 2313 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14125-PA 623 GG14125-PA 1..623 1..608 2982 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16245-PA 632 GH16245-PA 1..632 1..608 1842 66.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Msr-110-PB 608 CG10596-PB 1..608 1..608 3111 100 Plus
Msr-110-PA 617 CG10596-PA 1..617 1..608 3091 98.5 Plus
Msr-110-PD 605 CG10596-PD 1..605 1..608 3082 99.5 Plus
Msr-110-PC 625 CG10596-PC 50..625 33..608 2948 100 Plus
CG44085-PH 756 CG44085-PH 273..616 248..608 245 25 Plus
CG44085-PL 833 CG44085-PL 350..693 248..608 245 25 Plus
CG44085-PI 833 CG44085-PI 350..693 248..608 245 25 Plus
CG44085-PC 836 CG44085-PC 350..693 248..608 245 25 Plus
CG44085-PM 864 CG44085-PM 235..578 248..608 245 25 Plus
CG44085-PF 902 CG44085-PF 273..616 248..608 245 25 Plus
CG44085-PD 918 CG44085-PD 273..616 248..608 245 25 Plus
CG44085-PG 942 CG44085-PG 273..616 248..608 245 25 Plus
CG44085-PK 979 CG44085-PK 350..693 248..608 245 25 Plus
CG44085-PJ 979 CG44085-PJ 350..693 248..608 245 25 Plus
CG44085-PN 1007 CG44085-PN 350..693 248..608 245 25 Plus
CG44085-PP 2246 CG44085-PP 246..589 248..608 245 25 Plus
CG44085-PO 2381 CG44085-PO 235..578 248..608 245 25 Plus
Ptip-PA 2294 CG32133-PA 970..1344 242..600 237 25 Plus
Ptip-PA 2294 CG32133-PA 667..1032 237..599 233 25.7 Plus
Ptip-PA 2294 CG32133-PA 882..1257 235..604 233 24 Plus
Ptip-PA 2294 CG32133-PA 614..869 286..561 222 27.5 Plus
Ptip-PA 2294 CG32133-PA 378..741 240..607 215 23.1 Plus
velo-PC 1833 CG10107-PC 70..396 231..560 206 24.5 Plus
velo-PA 1833 CG10107-PA 70..396 231..560 206 24.5 Plus
Ptip-PA 2294 CG32133-PA 397..672 280..608 204 25.9 Plus
Wnk-PO 2243 CG7177-PO 722..1020 268..583 202 27.1 Plus
Wnk-PN 2441 CG7177-PN 920..1218 268..583 202 27.1 Plus
Wnk-PL 2441 CG7177-PL 920..1218 268..583 202 27.1 Plus
Wnk-PM 2462 CG7177-PM 920..1218 268..583 202 27.1 Plus
CG15740-PB 975 CG15740-PB 168..463 282..565 201 26.7 Plus
Wnk-PO 2243 CG7177-PO 809..1193 249..578 189 24.2 Plus
Wnk-PN 2441 CG7177-PN 1007..1391 249..578 189 24.2 Plus
Wnk-PL 2441 CG7177-PL 1007..1391 249..578 189 24.2 Plus
Wnk-PM 2462 CG7177-PM 1007..1391 249..578 189 24.2 Plus
Daxx-PB 1659 CG9537-PB 451..768 296..600 186 22.3 Plus
Daxx-PA 1659 CG9537-PA 451..768 296..600 186 22.3 Plus
Ptip-PA 2294 CG32133-PA 208..461 373..600 181 26.8 Plus
Usp10-PC 1517 CG32479-PC 462..692 278..528 179 24.7 Plus
Usp10-PA 1517 CG32479-PA 462..692 278..528 179 24.7 Plus
CG10543-PD 1631 CG10543-PD 1174..1426 280..529 178 27.7 Plus
CG10543-PE 1634 CG10543-PE 1177..1429 280..529 178 27.7 Plus
CG10543-PA 1634 CG10543-PA 1177..1429 280..529 178 27.7 Plus
CG10543-PF 1635 CG10543-PF 1178..1430 280..529 178 27.7 Plus
velo-PC 1833 CG10107-PC 77..406 288..603 177 24.7 Plus
velo-PA 1833 CG10107-PA 77..406 288..603 177 24.7 Plus
Smr-PF 3601 CG4013-PF 49..260 368..556 177 25.1 Plus
Smr-PE 3601 CG4013-PE 49..260 368..556 177 25.1 Plus
Smr-PD 3601 CG4013-PD 49..260 368..556 177 25.1 Plus
Trl-PF 582 CG33261-PF 327..582 292..535 175 25.4 Plus
Trl-PA 582 CG33261-PA 327..582 292..535 175 25.4 Plus
CG10543-PD 1631 CG10543-PD 1101..1390 298..606 174 24.5 Plus
CG10543-PE 1634 CG10543-PE 1104..1393 298..606 174 24.5 Plus
CG10543-PA 1634 CG10543-PA 1104..1393 298..606 174 24.5 Plus
CG10543-PF 1635 CG10543-PF 1105..1394 298..606 174 24.5 Plus
Smr-PF 3601 CG4013-PF 91..365 235..547 174 22.7 Plus
Smr-PE 3601 CG4013-PE 91..365 235..547 174 22.7 Plus
Smr-PD 3601 CG4013-PD 91..365 235..547 174 22.7 Plus
CG15740-PB 975 CG15740-PB 265..554 277..561 171 24.7 Plus
Clk-PH 895 CG7391-PH 419..700 295..546 170 25.5 Plus
Clk-PG 895 CG7391-PG 419..700 295..546 170 25.5 Plus
Clk-PF 961 CG7391-PF 485..766 295..546 170 25.5 Plus
Clk-PA 1023 CG7391-PA 547..828 295..546 170 25.5 Plus
Clk-PD 1027 CG7391-PD 551..832 295..546 170 25.5 Plus
mei-P26-PD 1189 CG12218-PD 524..731 361..575 170 27.5 Plus
mei-P26-PB 1189 CG12218-PB 524..731 361..575 170 27.5 Plus
mei-P26-PA 1189 CG12218-PA 524..731 361..575 170 27.5 Plus
mei-P26-PC 1206 CG12218-PC 524..731 361..575 170 27.5 Plus
mei-P26-PE 1206 CG12218-PE 524..731 361..575 170 27.5 Plus
CG34417-PW 4808 CG34417-PW 3582..3872 326..607 170 23.6 Plus
CG34417-PL 4862 CG34417-PL 3636..3926 326..607 170 23.6 Plus
Trl-PK 623 CG33261-PK 438..623 341..535 169 27.2 Plus
Daxx-PB 1659 CG9537-PB 451..814 241..608 165 21.4 Plus
Daxx-PA 1659 CG9537-PA 451..814 241..608 165 21.4 Plus
Ptip-PA 2294 CG32133-PA 208..474 276..563 161 24.6 Plus
velo-PC 1833 CG10107-PC 64..297 360..587 161 25.6 Plus
velo-PA 1833 CG10107-PA 64..297 360..587 161 25.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13180-PA 610 GI13180-PA 1..610 1..608 1944 69.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12028-PA 627 GL12028-PA 1..627 1..608 2039 76.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10426-PA 621 GA10426-PA 1..621 1..608 2041 76.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13911-PA 627 GM13911-PA 1..627 1..608 3029 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13189-PA 616 GD13189-PA 1..616 1..608 3056 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11956-PA 610 GJ11956-PA 1..610 1..608 1981 72 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17297-PA 586 GK17297-PA 1..586 1..608 1875 69.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20550-PA 633 GE20550-PA 1..633 1..608 2992 93.9 Plus

LD44960.hyp Sequence

Translation from 169 to 1995

> LD44960.hyp
MTEKDTVSMATVQMKPDYAASEVYSTASEPPPAYKRQANSVKIAKITAFT
IIVSAFILGSFILASSYLQAKASCDQVQALDSVLEKELMLETLQQVGKEL
PRAEPLLGGAAGAADDSELQSLEPESRKTEATQDAEEHPDKDNSYSDSDE
TDELQKFPGKMPLELDLSDLAAAILRNNKKSRMNCVVERKHAEEIVDSPS
KTVALPFGVNLTTDPKKARITGERISIFCDGGDDKDKEEKEAKRQREQEE
EDSDEDAEPLRPMFIPFQRVPIPFGRIPDQMPLTHMPQRMMPPAMQMQQQ
LPQQQQQGPIIIRQLPPPFQHLPMRPPMPPQVMQAPRMESSEEMQMPKVQ
TVRIHMQQIPFREIHVADDVPVQIPAQQQRLEMQQRQEMQQRQEMQQRHE
MQQRQEMQQRHEMQQRQEQREIPQIQIQPMPFGMALQRVGITAEDLRNIQ
RMAEDRITDELRRLAAEEGAESSEGSDEDVSSSAEQATTEAQTTVPQQQQ
QQTVQPEQQHPEEQHQEVSQERQEQQQQQVPQMRIQRLILQPLPEQPRDT
MTPPMPDQPQQLPFGRMVYGRSLAQPVRIPVPMMQAMEGGAAAPEESQRP
HFVQPRSV*

LD44960.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Msr-110-PB 608 CG10596-PB 1..608 1..608 3111 100 Plus
Msr-110-PA 617 CG10596-PA 1..617 1..608 3091 98.5 Plus
Msr-110-PD 605 CG10596-PD 1..605 1..608 3082 99.5 Plus
Msr-110-PC 625 CG10596-PC 50..625 33..608 2948 100 Plus
CG44085-PH 756 CG44085-PH 273..616 248..608 245 25 Plus