Clone LD44970 Report

Search the DGRC for LD44970

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:449
Well:70
Vector:pOT2
Associated Gene/TranscriptSucb-RA
Protein status:LD44970.pep: gold
Preliminary Size:1780
Sequenced Size:1576

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10622 2001-01-01 Release 2 assignment
CG10622 2001-07-04 Blastp of sequenced clone
CG10622 2003-01-01 Sim4 clustering to Release 3
Sucb 2008-04-29 Release 5.5 accounting
Sucb 2008-08-15 Release 5.9 accounting
Sucb 2008-12-18 5.12 accounting

Clone Sequence Records

LD44970.complete Sequence

1576 bp (1576 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051980

> LD44970.complete
TTTCGGTTGTGTTTTTAAACTAAATTTACCGACAAAGTTACGAAAATAAA
TTAATACCAAGTTAGCCAAGGTATTCAGTTACCACCGCAGATCAGCCAAG
ATGTCGTTCCTACTGAAAGCAGTTACCACAGCCCGTCACATCGTTCATAA
GGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTCCAGAGCAAGGATCTCC
TCCAGAAGTATGGAGTGGCCATACAGCAATTCAAGGTCTTGAATAACTCC
AAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGTGCCCGGAATACGTGGT
GAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAGGGAACTTTCGACAACG
GATTCAAAGGCGGCGTCCATATCACCACCAACAAGAGCGAGGTGCTTTCG
CTTACCCAGCAGATGATTGGAAACCGACTGATAACGAAACAAACGCCCAA
ATCGGGAATTTTGGTCAACAAGGTCATGGTGGCACGCAGTATCAACATCA
CCCGCGAGACCTATCTCTGCATCTTGCTGGACCGCGAGCACAATGGACCC
GTGCTGATTGCCTCACCTGCCGGTGGCATGGATATCGAGGCGGTGGCCGA
GGAAACCCCTGAGAAAATTAAGACTGTTCCGCTAGACATTGGCAAGCCCA
TACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTTCTTGGAGTTCAAGGGA
GACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAAAACTCTATACTCTCTT
CAAAGCTGTGGATGCCGTACAGATCGAGATCAACCCGCTGGCGGAGACGG
ATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCTCAACTTTGACGACAAT
GCCCAGTTCCGTCAGAAGGATATTTTCTCCATGGACGTCACCGAGGAGGA
ATCCGATCCCCGAGAAGTGGAGGCGGCCAAGTACAATCTGAACTACGTCG
CCATGGATGGCAACATTGGCTGCTTGGTTAATGGTGCCGGCCTGGCCATG
GCCACCATGGACATCATCAAGCTGAATGGAGGCGAGCCCGCCAACTTTTT
GGACGTCGGCGGTGGCGTCAGGGAGGATCAGGTGGCCAAAGCCTTCGAGA
TCCTCACTGCTGACCCGAAAGTCAAGGGAATCCTGGTCAATGTCTTTGGC
GGCATTGTCAATTGTGCCACCATTGCCAATGGCATTGTGGCTGCATCCAA
AAAGCTGCAACTGAATGTTCCACTGGTTGTGCGACTGGAGGGCACCAATG
TAAATCAGGCTCGCGAGATCCTGAAGAATTCGGGCCTGCCCATTCAGACA
GCCAGTGACTTGGATGATGCCGCCCACAAGGCTGTGGCAGCCCTTAATTA
GGGGAACGATTGAGGAGAGCATGTCTTCCAGAATGAAACGACGCTCATTA
GCATTTACAACGGTTGGGCCTTTTAAGTATAAGTTTTTATCGACAATATA
ACCAAAATATGTTATATTCTATATAAAAAGCTTTTTATTTGATTTAAGAA
GTACCTTAGCCATCTATCAAAAATTAATTAAATTTAAAATCATTTATTTC
TTAAAAAAAAAAAAAAAAAAAAAAAA

LD44970.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-RA 1595 Sucb-RA 42..1595 1..1554 7770 100 Plus
Sucb.c 1003 Sucb.c 42..1003 1..966 4745 99.5 Plus
Sucb.b 1220 Sucb.b 632..1220 378..966 2930 99.8 Plus
Sucb.b 1220 Sucb.b 42..422 1..381 1905 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5554291..5555465 1552..378 5860 99.9 Minus
chr3L 24539361 chr3L 5556080..5556233 154..1 770 100 Minus
chr3L 24539361 chr3L 5555856..5555987 281..150 660 100 Minus
chr3L 24539361 chr3L 5555675..5555775 381..281 490 99 Minus
chr3R 27901430 chr3R 4767435..4767586 914..1065 355 82.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5561699..5562875 1554..378 5870 99.9 Minus
3L 28110227 3L 5563490..5563643 154..1 770 100 Minus
3L 28110227 3L 5563266..5563397 281..150 660 100 Minus
3L 28110227 3L 5563085..5563185 381..281 505 100 Minus
3R 32079331 3R 8941506..8941657 914..1065 355 82.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5554799..5555975 1554..378 5870 99.9 Minus
3L 28103327 3L 5556590..5556743 154..1 770 100 Minus
3L 28103327 3L 5556366..5556497 281..150 660 100 Minus
3L 28103327 3L 5556185..5556285 381..281 505 100 Minus
3R 31820162 3R 8682337..8682488 914..1065 355 82.2 Plus
Blast to na_te.dros performed 2019-03-16 11:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2365..2503 1421..1552 112 58.2 Plus

LD44970.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:08:30 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5554328..5555461 382..1515 100 <- Minus
chr3L 5555675..5555774 282..381 99 <- Minus
chr3L 5555856..5555985 152..281 100 <- Minus
chr3L 5556083..5556233 1..151 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:11 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 1..1251 101..1351 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:15:37 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 1..1251 101..1351 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:57:16 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 1..1251 101..1351 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:02 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 1..1251 101..1351 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:43 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 1..1251 101..1351 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:09:27 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 42..1593 1..1552 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:15:37 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 42..1593 1..1552 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:57:16 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 49..1600 1..1552 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:02 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 42..1593 1..1552 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:43 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 49..1600 1..1552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:30 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5561701..5562871 382..1552 100 <- Minus
3L 5563085..5563184 282..381 100 <- Minus
3L 5563266..5563395 152..281 100 <- Minus
3L 5563493..5563643 1..151 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:30 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5561701..5562871 382..1552 100 <- Minus
3L 5563085..5563184 282..381 100 <- Minus
3L 5563266..5563395 152..281 100 <- Minus
3L 5563493..5563643 1..151 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:30 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5561701..5562871 382..1552 100 <- Minus
3L 5563085..5563184 282..381 100 <- Minus
3L 5563266..5563395 152..281 100 <- Minus
3L 5563493..5563643 1..151 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:57:16 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5554801..5555971 382..1552 100 <- Minus
arm_3L 5556185..5556284 282..381 100 <- Minus
arm_3L 5556366..5556495 152..281 100 <- Minus
arm_3L 5556593..5556743 1..151 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:24:57 Download gff for LD44970.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5554801..5555971 382..1552 100 <- Minus
3L 5556185..5556284 282..381 100 <- Minus
3L 5556366..5556495 152..281 100 <- Minus
3L 5556593..5556743 1..151 100   Minus

LD44970.pep Sequence

Translation from 100 to 1350

> LD44970.pep
MSFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNS
KADAEVVKTFECPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLS
LTQQMIGNRLITKQTPKSGILVNKVMVARSINITRETYLCILLDREHNGP
VLIASPAGGMDIEAVAEETPEKIKTVPLDIGKPIPESTLLEVAKFLEFKG
DSVKRCAEEIQKLYTLFKAVDAVQIEINPLAETDKGEVISVDAKLNFDDN
AQFRQKDIFSMDVTEEESDPREVEAAKYNLNYVAMDGNIGCLVNGAGLAM
ATMDIIKLNGGEPANFLDVGGGVREDQVAKAFEILTADPKVKGILVNVFG
GIVNCATIANGIVAASKKLQLNVPLVVRLEGTNVNQAREILKNSGLPIQT
ASDLDDAAHKAVAALN*

LD44970.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10458-PA 416 GF10458-PA 1..416 1..416 2050 92.8 Plus
Dana\GF17693-PA 513 GF17693-PA 35..426 20..412 970 50.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14126-PA 416 GG14126-PA 1..416 1..416 2154 98.8 Plus
Dere\GG13653-PA 505 GG13653-PA 35..426 20..412 980 50.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16246-PA 420 GH16246-PA 1..409 1..404 1912 87.8 Plus
Dgri\GH23962-PA 451 GH23962-PA 35..426 20..412 967 50.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
ScsbetaG-PC 416 CG10622-PC 1..416 1..416 2086 100 Plus
ScsbetaG-PA 416 CG10622-PA 1..416 1..416 2086 100 Plus
ScsbetaA-PH 451 CG11963-PH 35..426 20..412 962 50.8 Plus
ScsbetaA-PG 451 CG11963-PG 35..426 20..412 962 50.8 Plus
ScsbetaA-PB 502 CG11963-PB 35..426 20..412 962 50.8 Plus
ScsbetaA-PA 502 CG11963-PA 35..426 20..412 962 50.8 Plus
ScsbetaA-PJ 452 CG11963-PJ 35..427 20..412 955 50.9 Plus
ScsbetaA-PI 452 CG11963-PI 35..427 20..412 955 50.9 Plus
ScsbetaA-PD 503 CG11963-PD 35..427 20..412 955 50.9 Plus
ScsbetaA-PC 503 CG11963-PC 35..427 20..412 955 50.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13181-PA 420 GI13181-PA 1..420 1..415 1953 87.1 Plus
Dmoj\GI10056-PA 451 GI10056-PA 35..426 20..412 994 51.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12039-PA 422 GL12039-PA 1..422 1..416 1959 87.9 Plus
Dper\GL21555-PA 474 GL21555-PA 20..426 10..412 999 50.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10444-PA 422 GA10444-PA 1..422 1..416 1957 88.2 Plus
Dpse\GA26331-PA 451 GA26331-PA 20..426 10..412 999 50.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13912-PA 416 GM13912-PA 1..416 1..416 2147 98.3 Plus
Dsec\GM23771-PA 502 GM23771-PA 35..426 20..412 975 50.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13190-PA 416 GD13190-PA 1..416 1..416 2158 99 Plus
Dsim\GD18581-PA 507 GD18581-PA 35..431 20..412 954 49.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11957-PA 415 GJ11957-PA 1..415 1..415 1947 88.2 Plus
Dvir\GJ23792-PA 451 GJ23792-PA 20..426 10..412 987 50.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17298-PA 416 GK17298-PA 1..416 1..416 2012 90.9 Plus
Dwil\GK11971-PA 524 GK11971-PA 20..426 10..412 969 49.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20552-PA 416 GE20552-PA 1..416 1..416 2151 98.6 Plus
Dyak\GE25915-PA 503 GE25915-PA 35..426 20..412 977 50.8 Plus

LD44970.hyp Sequence

Translation from 100 to 1350

> LD44970.hyp
MSFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNS
KADAEVVKTFECPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLS
LTQQMIGNRLITKQTPKSGILVNKVMVARSINITRETYLCILLDREHNGP
VLIASPAGGMDIEAVAEETPEKIKTVPLDIGKPIPESTLLEVAKFLEFKG
DSVKRCAEEIQKLYTLFKAVDAVQIEINPLAETDKGEVISVDAKLNFDDN
AQFRQKDIFSMDVTEEESDPREVEAAKYNLNYVAMDGNIGCLVNGAGLAM
ATMDIIKLNGGEPANFLDVGGGVREDQVAKAFEILTADPKVKGILVNVFG
GIVNCATIANGIVAASKKLQLNVPLVVRLEGTNVNQAREILKNSGLPIQT
ASDLDDAAHKAVAALN*

LD44970.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-PC 416 CG10622-PC 1..416 1..416 2086 100 Plus
Sucb-PA 416 CG10622-PA 1..416 1..416 2086 100 Plus
skap-PH 451 CG11963-PH 35..426 20..412 962 50.8 Plus
skap-PG 451 CG11963-PG 35..426 20..412 962 50.8 Plus
skap-PB 502 CG11963-PB 35..426 20..412 962 50.8 Plus