Clone LD45056 Report

Search the DGRC for LD45056

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:450
Well:56
Vector:pOT2
Associated Gene/Transcriptmio-RA
Protein status:LD45056.pep: gold
Preliminary Size:2989
Sequenced Size:2918

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7074 2001-01-01 Release 2 assignment
CG7074 2001-10-10 Blastp of sequenced clone
CG7074 2003-01-01 Sim4 clustering to Release 3
mio 2008-04-29 Release 5.5 accounting
mio 2008-08-15 Release 5.9 accounting
mio 2008-12-18 5.12 accounting

Clone Sequence Records

LD45056.complete Sequence

2918 bp (2918 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061485

> LD45056.complete
ACGCGACGCAATTTAGTCTGTAGTGAAAATTGTTTTTTTTTACATCGATG
GAAAATCGGCCACGATGAGCGGCAATACACACGGACTCAGCTGGTTTCCA
CATTTTCCCGACAAATTCGTATCCTGGGGCCAGGAAATCCATTTATACGA
AGTGCGCCGCAAAGATGATCACAGCCAAAAAAGTCGCCTGCCTTATATAT
CCGTGAACTACCTCGCCAACGAGTCGCGCTATCAATATGCCCGCTGCGTG
GCCGCCTCCTACCACAGTGACCAGCCCATAATTGCAGTGGGTCTGGCGGA
TGGCAAAGTCGGGATTTGCAACTTCCGGGACACCTACGACAGCAGCTGGG
AGTACACACCGCGTCAGCAGCGCATGTGCACCTGCCTCGCCTGGAACGAG
CTGGATGCCAATATCCTGGCCATTGGACACGATCGCCATCGAAATGACAC
CTGCATCACCATCTGGGACATTGAGCGTGGAGTTCCCAAGGAGACGGCCA
ACTTCTTCGGCGTCGGCGAGTCGGCCAACTCCATTTGCTGGGATCGAAAT
CATCGCACGGTCATTGCGGGAATGAGCCAGAAGATGATAAAGCTGTTCGA
TCTGAGGCAGAGTAACGCCACCTGTCAAAGCATTCAAACAAAGACAGTGC
AGGGACTTTCCGTATCCCCCAATGGCAACTATCTCTGCAGCTATGTGGAC
TCGGTGATCACTCTGTGGGATCCGCGAAATATCAAGAGTCCCCTCAGGCA
GATTCAGTCCTCGAAAAACCATTTGCAGATCGCTTGGTGTCCGACCAGGA
CAAGCCTGCTTTCCTCGCTGCAACGCGATTCCTCCTACATCACTCTCTAC
GACATCCGGAGTGTGGACACGGACAATTCCGGAGAGATCTACCACGTAAA
ACGACAGATTAGCCCCTTTCCGGCTAGATACCAGCACAGTGGAAAGTTTT
CGTTTGTTAATTGCCTGTCGTGGCATTCGAGGGATTTCGAGAGAGCTCTG
CTTTTGGCAGATGCGCTGAACATCCTGGACTTTCGACTGCCAGCCACCTT
GCACACGGCGCACAGCAATCGCCGGAAATTGCCACTTCTGATGCAGCGTC
CGCTCTACACACCCGCCTCGCCGACTTCCACTGCGGCCACGCCCACTCAG
CAGCAGCCCACGAGCAGCTGCAGCACGAATAGCGGGAGTTCCCTGGACTT
TAGCACTCCTGGTGGTTCGCCCTTCAATGTGGACCTGCTGAAACCGGAAC
TCTTTGAGCTGGATCTGGTGGACGAGACGCGTCAGCGCGCTCTAGAGGAT
TACGGCATCAAACCCGATAACAAGCGATTCGGCGAACTCCACTTGACACC
GTATCTGCGAAATGTGTGGTCCACTTTGAACAATGTCTACAGCGAGGATC
GACTGACGGGCTTAAAGGCCACTTTGGGCATTAACTTGGGACACACCTCG
GAGGCCTTGATGGCCAGCTCCCGCATTGAATCTCAGGTGCTCCAGTGGCC
AGAGGGCATCAACAACTCCAACAAACTGATATGCTACAGGAGTGAGCAGC
GCGACCTGGCCCTCCAACTTTGCGGTTGGGCCTTTGAGCAGGAGCTGGAT
CGCTTTATAGACCAGTTGTATGCAAACAAGGAGTACAGCCGGGCAGCCAT
GATCTGCGTGTTCCACTTGAAAATTTTCCATGCCTGCAACATCCTATCGT
CGGCGGCGGACAACATGAGGGATCCCAGCATGTACAGGATCACCGTCATC
GCCTTGTCCAGTTTCAATGCAGATCGCTGCAGTTCCACGTGGCGGAATCA
GCGATCCAGCGCCAACATGCAGATACACGATCCACACTTAAGGGCTGTCT
TCTCCTTTCTAACGATGGAGAAGGACAATTTTGATGCAGTGCTCAAAGAG
GAAGGCGTTTCGTTATCAGACCGCATGGCCTTCGCCTGCAAATATCTATC
GGAGACCAAGCTGGCTGACTATGTTGCGCAGCAAATCCAGGCGGCCATAG
ATGGTGGCGATCTAAATGGCTTGTTGCTCACTGGAGAGTCGCAGGACGGA
ATCGATATACTGCAGTCCTATATGGACACCAGCTTCGATGTGCAGACGGT
AGCCCTGGTGGCCATTAACTACTTCCGGCAAGAGCTTTTCGAGGACAAGC
GCATCCAGTACTGGATCGCCAGCTACTTGGATCACCTCAATAGCTGGGGC
TTGTGGGAGAAGCGGGCCGAGCTGGACATCAAGATCGAGAGCATCCGCCC
ATCCTCCCGCAGTTCCCGCACCGTATTTCTGTCGTGCAACTTTTGCGGCA
AGTCTGTGTCCAACGCCTTGCTGGACGAGCCGCGTCCACGGAGCACCACC
ACCAGCACCAACAGGCTCTCCTCATGCCCCAGCTGCCGGAAACCCCTGCC
CCGCTGCTCGCTCTGCCTAATGCACATGGGCACAATGGTGAACATGAGCA
ATGGGGAGACCCCGACCACCACGCCCGACGTGCCCGGCTGGCAGACCAAG
CCCTTCTCAAAGTGGTTTTCCTGGTGTCAGACCTGTCGCCACGGCGGACA
CACCGAGCACATCATGCAGTGGTTCAAGCAAAATTCAGAGTGCCCCGTGT
CGTCGTGCAACTGCCGCTGCTTCGACATGGACGGCACCAAGCCGAACACA
TTGAGAGACATTTCCTAGCTGTCCGGAGCACCCACCATACACAGCCCTTA
CTCGCCCAGGCCATATGCATATGCATTAAGTTGTTGATTTGTTCCAAACG
CGTGCGCCTTAAACAAACTCAGAAGTGTTCATTGTACTTAGACAAGGGAT
GTGCCCGTAGCATTAGTGTTTATGACCTACCAGCTTTTAGCTGCTCAATT
GCATTTTATACTTACATTCAAATAAAGGGCTATAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

LD45056.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
mio-RA 3030 mio-RA 102..2984 1..2883 14400 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2217901..2218832 609..1540 4630 99.8 Plus
chr2L 23010047 chr2L 2218885..2219443 1537..2095 2780 99.8 Plus
chr2L 23010047 chr2L 2219502..2219986 2094..2578 2425 100 Plus
chr2L 23010047 chr2L 2220047..2220352 2578..2883 1515 99.7 Plus
chr2L 23010047 chr2L 2217557..2217808 357..608 1230 99.2 Plus
chr2L 23010047 chr2L 2217090..2217273 1..184 920 100 Plus
chr2L 23010047 chr2L 2217325..2217498 183..356 855 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2218174..2219105 609..1540 4660 100 Plus
2L 23513712 2L 2219158..2219716 1537..2095 2795 100 Plus
2L 23513712 2L 2219775..2220259 2094..2578 2425 100 Plus
2L 23513712 2L 2220320..2220625 2578..2883 1515 99.7 Plus
2L 23513712 2L 2217830..2218081 357..608 1260 100 Plus
2L 23513712 2L 2217363..2217546 1..184 920 100 Plus
2L 23513712 2L 2217598..2217771 183..356 870 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2218174..2219105 609..1540 4660 100 Plus
2L 23513712 2L 2219158..2219716 1537..2095 2795 100 Plus
2L 23513712 2L 2219775..2220259 2094..2578 2425 100 Plus
2L 23513712 2L 2220320..2220625 2578..2883 1515 99.6 Plus
2L 23513712 2L 2217830..2218081 357..608 1260 100 Plus
2L 23513712 2L 2217363..2217546 1..184 920 100 Plus
2L 23513712 2L 2217598..2217771 183..356 870 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:08:56 has no hits.

LD45056.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:09:36 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2217090..2217271 1..182 100 -> Plus
chr2L 2217325..2217498 183..356 99 -> Plus
chr2L 2217557..2217808 357..608 99 -> Plus
chr2L 2217901..2218831 609..1539 99 -> Plus
chr2L 2218888..2219443 1540..2095 99 -> Plus
chr2L 2219504..2219985 2096..2577 100 -> Plus
chr2L 2220047..2220352 2578..2883 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:18 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1..2604 65..2668 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:30 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1..2604 65..2668 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:40:07 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1..2604 65..2668 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:17 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1..2604 65..2668 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:53:55 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1..2604 65..2668 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:51 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1..2883 1..2883 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:30 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1..2883 1..2883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:07 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 74..2956 1..2883 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:17 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 1..2883 1..2883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:55 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
mio-RA 74..2956 1..2883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:36 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2217363..2217544 1..182 100 -> Plus
2L 2217598..2217771 183..356 100 -> Plus
2L 2217830..2218081 357..608 100 -> Plus
2L 2218174..2219104 609..1539 100 -> Plus
2L 2219161..2219716 1540..2095 100 -> Plus
2L 2219777..2220258 2096..2577 100 -> Plus
2L 2220320..2220625 2578..2883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:36 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2217363..2217544 1..182 100 -> Plus
2L 2217598..2217771 183..356 100 -> Plus
2L 2217830..2218081 357..608 100 -> Plus
2L 2218174..2219104 609..1539 100 -> Plus
2L 2219161..2219716 1540..2095 100 -> Plus
2L 2219777..2220258 2096..2577 100 -> Plus
2L 2220320..2220625 2578..2883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:36 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2217363..2217544 1..182 100 -> Plus
2L 2217598..2217771 183..356 100 -> Plus
2L 2217830..2218081 357..608 100 -> Plus
2L 2218174..2219104 609..1539 100 -> Plus
2L 2219161..2219716 1540..2095 100 -> Plus
2L 2219777..2220258 2096..2577 100 -> Plus
2L 2220320..2220625 2578..2883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:07 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2217830..2218081 357..608 100 -> Plus
arm_2L 2218174..2219104 609..1539 100 -> Plus
arm_2L 2217363..2217544 1..182 100 -> Plus
arm_2L 2217598..2217771 183..356 100 -> Plus
arm_2L 2219161..2219716 1540..2095 100 -> Plus
arm_2L 2219777..2220258 2096..2577 100 -> Plus
arm_2L 2220320..2220625 2578..2883 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:31 Download gff for LD45056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2217830..2218081 357..608 100 -> Plus
2L 2218174..2219104 609..1539 100 -> Plus
2L 2219161..2219716 1540..2095 100 -> Plus
2L 2219777..2220258 2096..2577 100 -> Plus
2L 2220320..2220625 2578..2883 99   Plus
2L 2217363..2217544 1..182 100 -> Plus
2L 2217598..2217771 183..356 100 -> Plus

LD45056.pep Sequence

Translation from 64 to 2667

> LD45056.pep
MSGNTHGLSWFPHFPDKFVSWGQEIHLYEVRRKDDHSQKSRLPYISVNYL
ANESRYQYARCVAASYHSDQPIIAVGLADGKVGICNFRDTYDSSWEYTPR
QQRMCTCLAWNELDANILAIGHDRHRNDTCITIWDIERGVPKETANFFGV
GESANSICWDRNHRTVIAGMSQKMIKLFDLRQSNATCQSIQTKTVQGLSV
SPNGNYLCSYVDSVITLWDPRNIKSPLRQIQSSKNHLQIAWCPTRTSLLS
SLQRDSSYITLYDIRSVDTDNSGEIYHVKRQISPFPARYQHSGKFSFVNC
LSWHSRDFERALLLADALNILDFRLPATLHTAHSNRRKLPLLMQRPLYTP
ASPTSTAATPTQQQPTSSCSTNSGSSLDFSTPGGSPFNVDLLKPELFELD
LVDETRQRALEDYGIKPDNKRFGELHLTPYLRNVWSTLNNVYSEDRLTGL
KATLGINLGHTSEALMASSRIESQVLQWPEGINNSNKLICYRSEQRDLAL
QLCGWAFEQELDRFIDQLYANKEYSRAAMICVFHLKIFHACNILSSAADN
MRDPSMYRITVIALSSFNADRCSSTWRNQRSSANMQIHDPHLRAVFSFLT
MEKDNFDAVLKEEGVSLSDRMAFACKYLSETKLADYVAQQIQAAIDGGDL
NGLLLTGESQDGIDILQSYMDTSFDVQTVALVAINYFRQELFEDKRIQYW
IASYLDHLNSWGLWEKRAELDIKIESIRPSSRSSRTVFLSCNFCGKSVSN
ALLDEPRPRSTTTSTNRLSSCPSCRKPLPRCSLCLMHMGTMVNMSNGETP
TTTPDVPGWQTKPFSKWFSWCQTCRHGGHTEHIMQWFKQNSECPVSSCNC
RCFDMDGTKPNTLRDIS*

LD45056.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14608-PA 868 GF14608-PA 1..868 1..867 4326 92.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24837-PA 867 GG24837-PA 1..867 1..867 4588 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13084-PA 883 GH13084-PA 1..883 1..867 3813 81.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
mio-PA 867 CG7074-PA 1..867 1..867 4645 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21560-PA 866 GI21560-PA 1..866 1..867 3799 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18708-PA 870 GL18708-PA 1..870 1..867 4066 88.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20081-PA 870 GA20081-PA 1..870 1..867 4066 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18321-PA 867 GM18321-PA 1..867 1..867 4686 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23137-PA 867 GD23137-PA 1..867 1..867 4693 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17489-PA 865 GJ17489-PA 1..865 1..867 3817 82.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15144-PA 897 GK15144-PA 1..701 1..697 2926 78.9 Plus
Dwil\GK15143-PA 727 GK15143-PA 1..695 1..691 2918 79.2 Plus
Dwil\GK15144-PA 897 GK15144-PA 852..897 822..867 266 95.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18029-PA 866 GE18029-PA 1..866 1..867 4616 98.2 Plus

LD45056.hyp Sequence

Translation from 64 to 2667

> LD45056.hyp
MSGNTHGLSWFPHFPDKFVSWGQEIHLYEVRRKDDHSQKSRLPYISVNYL
ANESRYQYARCVAASYHSDQPIIAVGLADGKVGICNFRDTYDSSWEYTPR
QQRMCTCLAWNELDANILAIGHDRHRNDTCITIWDIERGVPKETANFFGV
GESANSICWDRNHRTVIAGMSQKMIKLFDLRQSNATCQSIQTKTVQGLSV
SPNGNYLCSYVDSVITLWDPRNIKSPLRQIQSSKNHLQIAWCPTRTSLLS
SLQRDSSYITLYDIRSVDTDNSGEIYHVKRQISPFPARYQHSGKFSFVNC
LSWHSRDFERALLLADALNILDFRLPATLHTAHSNRRKLPLLMQRPLYTP
ASPTSTAATPTQQQPTSSCSTNSGSSLDFSTPGGSPFNVDLLKPELFELD
LVDETRQRALEDYGIKPDNKRFGELHLTPYLRNVWSTLNNVYSEDRLTGL
KATLGINLGHTSEALMASSRIESQVLQWPEGINNSNKLICYRSEQRDLAL
QLCGWAFEQELDRFIDQLYANKEYSRAAMICVFHLKIFHACNILSSAADN
MRDPSMYRITVIALSSFNADRCSSTWRNQRSSANMQIHDPHLRAVFSFLT
MEKDNFDAVLKEEGVSLSDRMAFACKYLSETKLADYVAQQIQAAIDGGDL
NGLLLTGESQDGIDILQSYMDTSFDVQTVALVAINYFRQELFEDKRIQYW
IASYLDHLNSWGLWEKRAELDIKIESIRPSSRSSRTVFLSCNFCGKSVSN
ALLDEPRPRSTTTSTNRLSSCPSCRKPLPRCSLCLMHMGTMVNMSNGETP
TTTPDVPGWQTKPFSKWFSWCQTCRHGGHTEHIMQWFKQNSECPVSSCNC
RCFDMDGTKPNTLRDIS*

LD45056.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
mio-PA 867 CG7074-PA 1..867 1..867 4645 100 Plus