Clone LD45115 Report

Search the DGRC for LD45115

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:451
Well:15
Vector:pOT2
Associated Gene/TranscriptRcp-RA
Protein status:LD45115.pep: wuzgold
Preliminary Size:1223
Sequenced Size:1069

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4875 2001-01-01 Release 2 assignment
CG4875 2001-10-10 Blastp of sequenced clone
CG4875 2003-01-01 Sim4 clustering to Release 3
CG4875 2008-04-29 Release 5.5 accounting
CG4875 2008-08-15 Release 5.9 accounting
CG4875 2008-12-18 5.12 accounting

Clone Sequence Records

LD45115.complete Sequence

1069 bp (1069 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061486

> LD45115.complete
ATCAATCCCACGTTCTCGTACCTCACCAATCTGGAGGTAATGCAGATTCT
ACAGAAGATCAAAAGCACCAAAAAGAAGTTCGGCATGCGCAACTTGGCCA
CGGTTACCTATGAGGCACTGCAGTATCTGGAGGAGTCGCCCTGCAAGACA
CAAACTCGTGAGAACATTATGAATTACGTTAAAGACCTGTCTTCTTATCG
TCTAAAGTCCCAAGAGATCCTGCAAATGATCAACGATCCGCCTACAAGTG
CACTACACACGCAACTGCTCATCGACGACAATAAAGCTCCACTAACCGAT
GAGGAGAACGAGAAAATCATTCAGCTGAGCTACAAACACTTCCATGGTGG
AGAAACCAAAGGCGCTGCTAAGGAAACACCGGCGGAAAAGCCTGCGGAGT
CCACTGCGAAGGCCGGCAAGCAATCTGGCGTAAAGCGTAATGCCCAGGCA
AAATCCAATCCAGCGGAACAAATAGCTCCAGCGGACAAAACCACGCCAGG
TGATGGAGTTACTCCTGCGAATGTCGCTACTCCTTCAAGTGAAGCCACTA
CTACTACTCCAGCAGAAGAAGCAAGCCCAGTGGAAACATCGTCTTCAGAA
AATAATGCTACTCCAGCAAATGAAGCCACTACAGCGCCTGCAACGGATGC
ACCCACTTCAATGGAAACCAAGTCCAATCCGACACCAGATGGAGAAAACC
TCGGGTAGCAGCCGCCAAAATAACCCATCCGCTTATTACGTTTAACGTTT
CATATATTTATGTTGATGGAGCGTATAAAATAAGCTAAAAAAAAAGGTAA
ATTATTTATGTTCGCTTCTGATCGCCCAAATCCTCGATGACGTCCTCATC
GATCTCGGCCCATTTTTCGGGTATGACATCGAACAAGTCATCCTTGACGT
CACCCTGAATGACGATCTCGTCGTCTCCGGTAACCGAGGAGCCGCAGGCA
AATTTCGTGCCAAAGAACTTGGCGGCCACCTTGAGATCAATATCTGGAAC
AGACAGGGAATGTATTATGCTTAGTTAACAATAAAGCTCATAAGTATATC
TAAAAAAAAAAAAAAAAAA

LD45115.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RA 1185 Rcp-RA 95..1147 1..1053 5265 100 Plus
Rcp-RB 1150 Rcp-RB 95..1147 1..1053 5265 100 Plus
Rcp.b 1048 Rcp.b 104..1045 112..1053 4710 100 Plus
Rcp.b 1048 Rcp.b 71..115 1..45 195 95.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16774702..16775486 267..1051 3850 99.4 Plus
chrX 22417052 chrX 16774489..16774643 113..267 745 98.7 Plus
chrX 22417052 chrX 16774314..16774428 1..115 575 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:40:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885075..16885861 267..1053 3935 100 Plus
X 23542271 X 16884862..16885016 113..267 775 100 Plus
X 23542271 X 16884687..16884801 1..115 575 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16893173..16893959 267..1053 3935 100 Plus
X 23527363 X 16892960..16893114 113..267 775 100 Plus
X 23527363 X 16892785..16892899 1..115 575 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:43:02 has no hits.

LD45115.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:43:59 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16774314..16774427 1..114 100 -> Plus
chrX 16774491..16774643 115..267 98 -> Plus
chrX 16774703..16775486 268..1051 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:20 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 10..717 1..708 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:50:26 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 10..717 1..708 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:13 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 10..717 1..708 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:19:30 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 10..717 1..708 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:52:09 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 10..717 1..708 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:35:07 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 28..1078 1..1051 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:50:26 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 28..1078 1..1051 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:13 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 30..1080 1..1051 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:19:30 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 28..1078 1..1051 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:09 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 30..1080 1..1051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:59 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
X 16884687..16884800 1..114 100 -> Plus
X 16884864..16885016 115..267 100 -> Plus
X 16885076..16885859 268..1051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:59 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
X 16884687..16884800 1..114 100 -> Plus
X 16884864..16885016 115..267 100 -> Plus
X 16885076..16885859 268..1051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:59 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
X 16884687..16884800 1..114 100 -> Plus
X 16884864..16885016 115..267 100 -> Plus
X 16885076..16885859 268..1051 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:13 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16778720..16778833 1..114 100 -> Plus
arm_X 16778897..16779049 115..267 100 -> Plus
arm_X 16779109..16779892 268..1051 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:56:12 Download gff for LD45115.complete
Subject Subject Range Query Range Percent Splice Strand
X 16893174..16893957 268..1051 100   Plus
X 16892785..16892898 1..114 100 -> Plus
X 16892962..16893114 115..267 100 -> Plus

LD45115.hyp Sequence

Translation from 0 to 707

> LD45115.hyp
INPTFSYLTNLEVMQILQKIKSTKKKFGMRNLATVTYEALQYLEESPCKT
QTRENIMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLLIDDNKAPLTD
EENEKIIQLSYKHFHGGETKGAAKETPAEKPAESTAKAGKQSGVKRNAQA
KSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETSSSE
NNATPANEATTAPATDAPTSMETKSNPTPDGENLG*

LD45115.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-PC 238 CG4875-PC 4..238 1..235 1199 100 Plus
Rcp-PB 238 CG4875-PB 4..238 1..235 1199 100 Plus

LD45115.pep Sequence

Translation from 39 to 707

> LD45115.pep
MQILQKIKSTKKKFGMRNLATVTYEALQYLEESPCKTQTRENIMNYVKDL
SSYRLKSQEILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQLSYKH
FHGGETKGAAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADK
TTPGDGVTPANVATPSSEATTTTPAEEASPVETSSSENNATPANEATTAP
ATDAPTSMETKSNPTPDGENLG*

LD45115.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13917-PA 178 GF13917-PA 17..167 1..149 544 72.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19087-PA 257 GG19087-PA 17..206 1..191 809 83.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11926-PA 137 GH11926-PA 17..126 1..108 448 75.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-PC 238 CG4875-PC 17..238 1..222 1132 100 Plus
Rcp-PB 238 CG4875-PB 17..238 1..222 1132 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15347-PA 133 GI15347-PA 17..117 1..101 443 80.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22778-PA 162 GL22778-PA 17..122 1..106 529 89.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18494-PA 166 GA18494-PA 17..122 1..106 528 89.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13474-PA 234 GM13474-PA 17..234 1..222 981 89.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17317-PA 234 GD17317-PA 17..234 1..222 985 89.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19451-PA 132 GJ19451-PA 17..129 1..116 447 70.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18530-PA 139 GK18530-PA 17..119 1..103 505 89.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17632-PA 216 GE17632-PA 17..211 1..222 734 72.1 Plus