Clone LD45152 Report

Search the DGRC for LD45152

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:451
Well:52
Vector:pOT2
Associated Gene/TranscriptCG3605-RA
Protein status:LD45152.pep: gold
Preliminary Size:2331
Sequenced Size:2442

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3605 2001-01-01 Release 2 assignment
CG3605 2001-10-10 Blastp of sequenced clone
CG3605 2003-01-01 Sim4 clustering to Release 3
CG3605 2008-04-29 Release 5.5 accounting
CG3605 2008-08-15 Release 5.9 accounting
CG3605 2008-12-18 5.12 accounting

Clone Sequence Records

LD45152.complete Sequence

2442 bp (2442 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061487

> LD45152.complete
ATATGTCTCGGTGGTACAAAAATATCTTGTCGCGCATCACTAGAATTGTG
GTTTATAAAAAAATTTCGGCTCGGTTTGGGTTTTTAAAGATTAATTTAAT
TTATGGCGGACCAGTTGAACAACGAGCCCGGCCAACCCACGCCGCTCATG
TCCATTCGCTTCGACCAGCAGCAGCACGAAAGTGCGGCGGCCAATGGAAA
TGAGAACGGCAATGGTAATGCCAATGGCGACGGCGATGCCTCCGAAGATG
CTGTTGATGCCGAAAAAACGCCCGGAGAACTGGTCCTGCCCAAGGCCTTG
GAGGACGTTCTGGCTTTGAAGGATCAAAGGGCAGCCGAGTTCACGGTGGA
CGCCGATTCGCAGGGTGGCAGTGGGGGTGCTACCCAGGACGGCGACGAAG
CGGATGTGGGCGAGGACAGCGAGGAGGATGCGGATAACCAGGTGAACGGG
AGTGCCAGCCAAAAGACCGGCAAGCAGAGCAAGGCGGAGCGTAACAAAAA
GAAGAAGAAGCGAAAGAAGCAGAACAGGAAGATACGCCACCAGATTGAGT
TCGCACGGCAGCAGCAGTTGGCCCAAGCGGAGGAGAACGAACCGGAGGCC
AAGGACTCGGAGACAAAAGCCCATGGCAGCGAGGACGAACAGGTTGCCGA
AAAGGAAAAGAAGGACAAACGCAAAGAGAGTCGCAGCAAGCGCAGGAAGG
ATCGTAGTGATGAGAAAGATACGGACAAAAAGGCTGGCGAGGCCAATGAT
GAAAATGTGACCATTGAATATGTGCCCGAAAAGATAACCATTGCCGATTT
GGCGCCAATGTACCGCCAGTTTTATCGTGTGTTCGAAATCTTCAAGCTGG
AAAACAAACCAAAGCCTGTGGAGAAGGACAAATCTTCGCACGATTCTGAG
TCCCATCCCAGGGACAAAAAGGCTACAGACAAACAGCTCGAGGACGAGGA
CGATGACGGCGATGATGACGAAGAGCGCAAGGAAGACAAGGAGAAGCTGT
CCAAGCGGAAACTTAAGAAACTGACCCGTTTGAGTGTGGCAGAACTGAAA
CAACTGGTCTCTCGACCTGACGTAGTGGAGATGCACGATGTCACAGCGAG
AGATCCCAAACTACTGGTTCAACTGAAAGCCTATAGGAACACAGTACAAG
TGCCGCGGCATTGGTGCTTCAAGCGAAAATATCTGCAGGGCAAAAGGGGT
ATTGAGAAGCCTCCGTTCGATCTCCCCGCCTTCATCAAAAAGACGGGCAT
CATGGAGATGCGCGAATCGTTGCAGGAACGAGAGGACGCCAAGACACTCA
AGGCCAAGATGCGTGAACGCGTCCGTCCCAAGATGGGCAAAATTGACATT
GACTACCAGAAACTTCACGATGCCTTCTTCAAGTGGCAGACCAAGCCCCG
CATGACCATTCATGGCGACCTCTACTACGAGGGCAAGGAGTTTGAGACAC
GCCTTAAGGAAAAGAAGCCCGGAGATCTCTCCGAGGAGTTGCGCATTGCT
CTGGGAATGCCCGTGGGACCCAACTCACACAAGATTCCGCCACCATGGCT
CATTGCTCAACAGCGCTACGGGCCGCCGCCCTCGTATCCGAATCTTAAAA
TTCCTGGCCTGAATGCTCCGATCCCAGACGGAACCTCGTTCGGTTATCAT
GCCGGAGGTTGGGGCAAGCCGCCAGTGGATGAGAACGGAAAACCGCTGTA
CGGTGACGTATTTGGAACCAACATATTGGACCTTGATAATGGCGTAGACG
AAGCTGACATTGAACGTAACCAATGGGGCGAACTGGAATCGGAGTCAGAA
GAATCATCCGAGGAGGAAGAGGAAGATGGCGAGGACTTGGGCGATCAGCA
GGATGAGACTGGCCTGGTAACGCCAGTAGAGGGACTAGTAACACCCTCTG
GACTCACCAGTGTTCCAGCTGGCATGGAAACCCCCGAGAACATTGAGCTT
CGCAAGAAGAAAATTGAAGCCGAGATGGAGGACAACGAAACTCCTGTTCT
GTATCAAGTGCTGCCTGAGAAGCGCACCGACCGCATAGGGGCTTCCATGA
TGGGATCAACCCATGTCTACGACGTCAGTGGCAGTGGGGCTAACAAACAG
CCCCCAGTTCGATCAACCACAGATCGCGAGGGCATTGTGGAACTGGCTCT
CGATCCTAGCGAATTGGACTTGGACAATGACGCAATGGCCCAGCGTTATG
AGCAACAAATGCGTGAGCAGCAGAATCACCTGCAAAAGGAGGATCTGTCA
GACATGTTGGCCGAACATGTGGCGCGGCAGAAATCGAAGCGCAAGCGACA
GCAAACGGATCCGGCCAAGACCACAAAGAAGTACAAGGAGTTCAAGTTTT
AGTTTGACAACAAGAAATACAACTTTTCCATTTGTGCGATTGTCAAGGAT
GTCATTAAACATAGTAAAAACTACAAAAAAAAAAAAAAAAAA

LD45152.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3605-RA 2471 CG3605-RA 16..2441 1..2426 12130 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3026978..3027947 1737..768 4850 100 Minus
chr2L 23010047 chr2L 3028005..3028647 767..125 3215 100 Minus
chr2L 23010047 chr2L 3026172..3026613 2424..1983 2180 99.5 Minus
chr2L 23010047 chr2L 3026677..3026921 1982..1738 1225 100 Minus
chr2L 23010047 chr2L 3028703..3028828 126..1 630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3027339..3028308 1737..768 4850 100 Minus
2L 23513712 2L 3028366..3029008 767..125 3215 100 Minus
2L 23513712 2L 3026531..3026974 2426..1983 2220 100 Minus
2L 23513712 2L 3027038..3027282 1982..1738 1225 100 Minus
2L 23513712 2L 3029064..3029189 126..1 630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3027339..3028308 1737..768 4850 100 Minus
2L 23513712 2L 3028366..3029008 767..125 3215 100 Minus
2L 23513712 2L 3026531..3026974 2426..1983 2220 100 Minus
2L 23513712 2L 3027038..3027282 1982..1738 1225 100 Minus
2L 23513712 2L 3029064..3029189 126..1 630 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:37:08 has no hits.

LD45152.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:38:18 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3026677..3026921 1738..1982 100 <- Minus
chr2L 3026172..3026613 1983..2424 99 <- Minus
chr2L 3026978..3027947 768..1737 100 <- Minus
chr2L 3028005..3028645 127..767 93 <- Minus
chr2L 3028703..3028828 1..126 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:22 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2250 103..2352 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:32 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2250 103..2352 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:08:33 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2250 103..2352 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:18 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2250 103..2352 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:38:07 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2250 103..2352 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:53 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2424 1..2424 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:32 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2424 1..2424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:08:33 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2403 22..2424 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:18 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2424 1..2424 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:38:07 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3605-RA 1..2403 22..2424 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:38:18 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3026533..3026974 1983..2424 100 <- Minus
2L 3027038..3027282 1738..1982 100 <- Minus
2L 3027339..3028308 768..1737 100 <- Minus
2L 3028366..3029006 127..767 100 <- Minus
2L 3029064..3029189 1..126 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:38:18 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3026533..3026974 1983..2424 100 <- Minus
2L 3027038..3027282 1738..1982 100 <- Minus
2L 3027339..3028308 768..1737 100 <- Minus
2L 3028366..3029006 127..767 100 <- Minus
2L 3029064..3029189 1..126 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:38:18 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3026533..3026974 1983..2424 100 <- Minus
2L 3027038..3027282 1738..1982 100 <- Minus
2L 3027339..3028308 768..1737 100 <- Minus
2L 3028366..3029006 127..767 100 <- Minus
2L 3029064..3029189 1..126 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:08:33 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3026533..3026974 1983..2424 100 <- Minus
arm_2L 3027038..3027282 1738..1982 100 <- Minus
arm_2L 3027339..3028308 768..1737 100 <- Minus
arm_2L 3028366..3029006 127..767 100 <- Minus
arm_2L 3029064..3029189 1..126 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:32 Download gff for LD45152.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3026533..3026974 1983..2424 100 <- Minus
2L 3027038..3027282 1738..1982 100 <- Minus
2L 3027339..3028308 768..1737 100 <- Minus
2L 3028366..3029006 127..767 100 <- Minus
2L 3029064..3029189 1..126 100   Minus

LD45152.pep Sequence

Translation from 102 to 2351

> LD45152.pep
MADQLNNEPGQPTPLMSIRFDQQQHESAAANGNENGNGNANGDGDASEDA
VDAEKTPGELVLPKALEDVLALKDQRAAEFTVDADSQGGSGGATQDGDEA
DVGEDSEEDADNQVNGSASQKTGKQSKAERNKKKKKRKKQNRKIRHQIEF
ARQQQLAQAEENEPEAKDSETKAHGSEDEQVAEKEKKDKRKESRSKRRKD
RSDEKDTDKKAGEANDENVTIEYVPEKITIADLAPMYRQFYRVFEIFKLE
NKPKPVEKDKSSHDSESHPRDKKATDKQLEDEDDDGDDDEERKEDKEKLS
KRKLKKLTRLSVAELKQLVSRPDVVEMHDVTARDPKLLVQLKAYRNTVQV
PRHWCFKRKYLQGKRGIEKPPFDLPAFIKKTGIMEMRESLQEREDAKTLK
AKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPRMTIHGDLYYEGKEFETR
LKEKKPGDLSEELRIALGMPVGPNSHKIPPPWLIAQQRYGPPPSYPNLKI
PGLNAPIPDGTSFGYHAGGWGKPPVDENGKPLYGDVFGTNILDLDNGVDE
ADIERNQWGELESESEESSEEEEEDGEDLGDQQDETGLVTPVEGLVTPSG
LTSVPAGMETPENIELRKKKIEAEMEDNETPVLYQVLPEKRTDRIGASMM
GSTHVYDVSGSGANKQPPVRSTTDREGIVELALDPSELDLDNDAMAQRYE
QQMREQQNHLQKEDLSDMLAEHVARQKSKRKRQQTDPAKTTKKYKEFKF*

LD45152.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14752-PA 749 GF14752-PA 1..749 1..749 2877 88.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24466-PA 752 GG24466-PA 1..752 1..749 3325 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10339-PA 756 GH10339-PA 1..756 1..749 2765 80.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sf3b2-PB 749 CG3605-PB 1..749 1..749 3906 100 Plus
Sf3b2-PA 749 CG3605-PA 1..749 1..749 3906 100 Plus
rudhira-PE 2075 CG43154-PE 1278..1657 39..421 190 24.2 Plus
rudhira-PC 2075 CG43154-PC 1278..1657 39..421 190 24.2 Plus
ncm-PA 1330 CG12750-PA 939..1078 84..218 163 26.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 4709..5105 48..461 162 20.5 Plus
Strn-Mlck-PV 7944 CG44162-PV 4748..5144 48..461 162 20.5 Plus
Strn-Mlck-PS 8216 CG44162-PS 4709..5105 48..461 162 20.5 Plus
Strn-Mlck-PU 8255 CG44162-PU 4748..5144 48..461 162 20.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17098-PA 747 GI17098-PA 1..747 1..749 2838 82.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19575-PA 758 GL19575-PA 1..758 1..749 2939 84.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17553-PA 758 GA17553-PA 1..758 1..749 2941 84.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18174-PA 724 GM18174-PA 1..724 1..749 3737 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10895-PA 748 GJ10895-PA 1..748 1..749 2878 82.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14958-PA 785 GK14958-PA 1..785 1..749 2769 79 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14955-PA 749 GE14955-PA 1..749 1..749 3380 96 Plus

LD45152.hyp Sequence

Translation from 102 to 2351

> LD45152.hyp
MADQLNNEPGQPTPLMSIRFDQQQHESAAANGNENGNGNANGDGDASEDA
VDAEKTPGELVLPKALEDVLALKDQRAAEFTVDADSQGGSGGATQDGDEA
DVGEDSEEDADNQVNGSASQKTGKQSKAERNKKKKKRKKQNRKIRHQIEF
ARQQQLAQAEENEPEAKDSETKAHGSEDEQVAEKEKKDKRKESRSKRRKD
RSDEKDTDKKAGEANDENVTIEYVPEKITIADLAPMYRQFYRVFEIFKLE
NKPKPVEKDKSSHDSESHPRDKKATDKQLEDEDDDGDDDEERKEDKEKLS
KRKLKKLTRLSVAELKQLVSRPDVVEMHDVTARDPKLLVQLKAYRNTVQV
PRHWCFKRKYLQGKRGIEKPPFDLPAFIKKTGIMEMRESLQEREDAKTLK
AKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPRMTIHGDLYYEGKEFETR
LKEKKPGDLSEELRIALGMPVGPNSHKIPPPWLIAQQRYGPPPSYPNLKI
PGLNAPIPDGTSFGYHAGGWGKPPVDENGKPLYGDVFGTNILDLDNGVDE
ADIERNQWGELESESEESSEEEEEDGEDLGDQQDETGLVTPVEGLVTPSG
LTSVPAGMETPENIELRKKKIEAEMEDNETPVLYQVLPEKRTDRIGASMM
GSTHVYDVSGSGANKQPPVRSTTDREGIVELALDPSELDLDNDAMAQRYE
QQMREQQNHLQKEDLSDMLAEHVARQKSKRKRQQTDPAKTTKKYKEFKF*

LD45152.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3605-PB 749 CG3605-PB 1..749 1..749 3906 100 Plus
CG3605-PA 749 CG3605-PA 1..749 1..749 3906 100 Plus
rudhira-PE 2075 CG43154-PE 1278..1657 39..421 190 24.2 Plus
rudhira-PC 2075 CG43154-PC 1278..1657 39..421 190 24.2 Plus
ncm-PA 1330 CG12750-PA 939..1078 84..218 163 26.4 Plus