Clone LD45195 Report

Search the DGRC for LD45195

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:451
Well:95
Vector:pOT2
Associated Gene/TranscriptNon2-RA
Protein status:LD45195.pep: gold
Preliminary Size:1403
Sequenced Size:1321

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1240 2001-01-01 Release 2 assignment
CG1240 2001-10-10 Blastp of sequenced clone
CG1240 2003-01-01 Sim4 clustering to Release 3
CG1240 2008-04-29 Release 5.5 accounting
CG1240 2008-08-15 Release 5.9 accounting
CG1240 2008-12-18 5.12 accounting

Clone Sequence Records

LD45195.complete Sequence

1321 bp (1321 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061488

> LD45195.complete
CTCATCAAGTAGCAACCCTATAGAGACGCCGGGACTTGGTGTAAAGAAAA
AACGAAAAAGATTTGTCTTTTTAAGCGCCGCAAAGAATCCGGAAAAACGT
GAATATACCACCGAAAACGGATCTCCGGCTGAAACCCCTACGTGTAGCGC
AGGAAAACGAGGAACACCACGAACCAAGATGTCGGACATCTCCAGCGAGG
ACCTGCGTCGTGAAATTCAGGCGGTTCTGAAGGACGCCGATTTGGCGACC
ATTTCGGCAAAGAGGGTGCGCGAGCAGGTGGAGGGAAAGCTGAACTGCTC
GTTGCTGAGCCGCAAGAAGGAGTTCGACAAGATCGTGATGGAGGTGATCA
ACGAGCAGCAGGACGAGGAGGACGAAGACGATGACGAGGGCAAGGATCCC
GATGCCGATCCCGACGATGAGAGCGAGCCCAGCGAGGAGGAGGACCCCAG
CAGCAGCGAGGAGGAGGCCGCCAAGAAGAAGAAGCAGAGCCCCAAGAAGA
GGCCACAGCCCACGAAGCACAAGGCGCCCAAGAAGAAGCGCAAGACCCTA
AATGCCGACGATTCCGGCACCGAGAGCGATGCCGGCTCGGACTCGGACTA
CGAGGTGGTCAAGAAGCCGGCGGCCAAGAAGAAGGCCAAGGCGGCCGGGG
GAACAGGATCGGGACGTAAGAGCACCGGCTTCACACGCGCATACAATCTA
TCACCGGAACTGAGCGCCCTCATGGGAGAGTCCTCCCTGCCGCGCCACGA
AGTCGTGAAGAAGGTGTGGGCCATCATCAAGGAGCGCGATTTGTACGACC
CCAAGAACAAGCAGTTCGCCATTTGCGACGACGAGCTGATGAAGGTGATG
AAGATCCGCCGCTTCCGCACCTTTGGCATGCTGAAGCATCTCAAGCCGCA
CTTTCTCGATTAGATCAGATCCGCCCTCCGATCCTCTCCAGATGCAAATA
TATGTGTATGCCTCTCCGCCAGCCTGGTTTACCAATCCCCTGTAACTTTC
GGCTCCGCCTGGATTTGTTTGTTCCACAACCTTTGATTAAGATTTAGTTG
ACGCATGTGTTTAGCATTACCCTAATTAGGACGGGTTTGCACATTATGCA
CTTTACGGCATTTTAGGAATAGTTCAGATGAACGGAAAATTACAAAAAAA
AAATCGATTATAATACATAATGTGTATGATTTTTTTTATGACAAACTCGT
GTAGTTTACATTTTATAAAATATCAAAGAAAAACATAACAAGTTTAAGGC
AAGTACCGAGTAATAAAAAGAGAAATAGACGAGTGATGCATCTGAAAAAT
ACGAAAAAAAAAAAAAAAAAA

LD45195.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1240-RA 1419 CG1240-RA 72..1377 1..1306 6530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2766651..2767824 127..1299 5760 99.6 Plus
chr3L 24539361 chr3L 2766451..2766578 1..128 640 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2767216..2768395 127..1306 5900 100 Plus
3L 28110227 3L 2767016..2767143 1..128 640 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2767216..2768395 127..1306 5900 100 Plus
3L 28103327 3L 2767016..2767143 1..128 640 100 Plus
Blast to na_te.dros performed 2019-03-16 11:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 4442..4532 1255..1169 112 61.5 Minus
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 574..599 368..393 112 92.3 Plus

LD45195.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:08:34 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2766451..2766577 1..127 100 -> Plus
chr3L 2766652..2767829 128..1303 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:25 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 1..735 179..913 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:16 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 1..735 179..913 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:57:52 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 1..735 179..913 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:04 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 1..735 179..913 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:56 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
Non2-RA 1..735 179..913 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:31 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 21..1323 1..1303 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:16 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 21..1323 1..1303 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:57:52 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 18..1320 1..1303 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:04 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
CG1240-RA 21..1323 1..1303 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:56 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
Non2-RA 18..1320 1..1303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:34 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2767016..2767142 1..127 100 -> Plus
3L 2767217..2768392 128..1303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:34 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2767016..2767142 1..127 100 -> Plus
3L 2767217..2768392 128..1303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:34 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2767016..2767142 1..127 100 -> Plus
3L 2767217..2768392 128..1303 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:57:52 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2767016..2767142 1..127 100 -> Plus
arm_3L 2767217..2768392 128..1303 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:17 Download gff for LD45195.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2767217..2768392 128..1303 100   Plus
3L 2767016..2767142 1..127 100 -> Plus

LD45195.hyp Sequence

Translation from 0 to 912

> LD45195.hyp
SSSSNPIETPGLGVKKKRKRFVFLSAAKNPEKREYTTENGSPAETPTCSA
GKRGTPRTKMSDISSEDLRREIQAVLKDADLATISAKRVREQVEGKLNCS
LLSRKKEFDKIVMEVINEQQDEEDEDDDEGKDPDADPDDESEPSEEEDPS
SSEEEAAKKKKQSPKKRPQPTKHKAPKKKRKTLNADDSGTESDAGSDSDY
EVVKKPAAKKKAKAAGGTGSGRKSTGFTRAYNLSPELSALMGESSLPRHE
VVKKVWAIIKERDLYDPKNKQFAICDDELMKVMKIRRFRTFGMLKHLKPH
FLD*

LD45195.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Non2-PA 244 CG1240-PA 1..244 60..303 1249 100 Plus

LD45195.pep Sequence

Translation from 178 to 912

> LD45195.pep
MSDISSEDLRREIQAVLKDADLATISAKRVREQVEGKLNCSLLSRKKEFD
KIVMEVINEQQDEEDEDDDEGKDPDADPDDESEPSEEEDPSSSEEEAAKK
KKQSPKKRPQPTKHKAPKKKRKTLNADDSGTESDAGSDSDYEVVKKPAAK
KKAKAAGGTGSGRKSTGFTRAYNLSPELSALMGESSLPRHEVVKKVWAII
KERDLYDPKNKQFAICDDELMKVMKIRRFRTFGMLKHLKPHFLD*

LD45195.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24247-PA 247 GF24247-PA 1..247 1..244 758 81.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14886-PA 244 GG14886-PA 1..244 1..244 1240 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16267-PA 254 GH16267-PA 1..252 1..243 763 81 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Non2-PA 244 CG1240-PA 1..244 1..244 1249 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13202-PA 245 GI13202-PA 1..245 1..244 884 82.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18416-PA 246 GL18416-PA 1..246 1..244 778 83.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11609-PA 246 GA11609-PA 1..246 1..244 778 83.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14512-PA 111 GM14512-PA 4..111 137..244 574 98.1 Plus
Dsec\GM14510-PA 80 GM14510-PA 1..72 1..72 359 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13706-PA 229 GD13706-PA 1..229 1..244 814 89.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11979-PA 247 GJ11979-PA 1..247 1..244 873 83.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12593-PA 246 GK12593-PA 1..246 1..244 798 80.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20337-PA 244 GE20337-PA 1..244 1..244 1236 98 Plus