Clone LD45235 Report

Search the DGRC for LD45235

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:452
Well:35
Vector:pOT2
Associated Gene/Transcriptr-l-RA
Protein status:LD45235.pep: gold
Preliminary Size:2093
Sequenced Size:2037

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3593 2001-01-01 Release 2 assignment
CG3593 2001-09-19 Blastp of sequenced clone
CG3593 2003-01-01 Sim4 clustering to Release 3
r-l 2008-04-29 Release 5.5 accounting
r-l 2008-08-15 Release 5.9 accounting
r-l 2008-12-18 5.12 accounting

Clone Sequence Records

LD45235.complete Sequence

2037 bp (2037 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058714

> LD45235.complete
ACTCCCAATTGGACGGTTCTTATTGGAGCCTAGCTAGCACGTGTGTGAAG
AATTAAGATCGAGATTTAGAATTGCCAGCATGGTTGCCCAGAACTCCGAC
AAAATGCGGGCCCTGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTT
CGGCGACTTCAAGATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACC
TCCGAGTGATCGTCAGTTATCCGGATGTGATGCAAACCGTATCCGACCTG
CTGGTGGAACACATCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGG
TGTTCCCTACACGGCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGG
GAACTCCCATGCTGGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAG
AAGCTGGTCGAGGGCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGA
GGACGTGGTCACCTCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGC
AAGGCGAGGGCATTGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAG
CAGGGCGGAGTGGCCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCT
CTTCACGCTCTCCTTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCG
AGAAGTCCACAGTGGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATC
AACAGCGATGGTACCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGC
CAACGACTTGCAGCGCACTAAACTGACCTACGAGAATCGCGCCAATCTGG
CTAAGAGCGCGGTGGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAG
ACGAACCTCTGCTTGGCCGCCGACCTGACACACGCCGATGAGATCCTGGA
CGTGGCCGACAAGTGCGGTCCGTACATTTGCCTGCTGAAGACGCACGTAG
ACATTGTGGAGGATTTCAGTGATAAATTCATCGCTGACCTGCAAGCTCTG
GCCCAGCGGCACAATTTCCTGCTGATGGAGGATCGCAAGTTTGCAGACAT
CGGCAACACGGTGTCCCTGCAGTACGGCAAGGGCATCTATAAGATTTCCA
GTTGGGCAGATCTGGTCACGGCCCACACCTTACCTGGACGTAGTATTCTG
CAGGGTCTGAAGGCGGGCCTTGGCGAAGGAGGAGCCGGCAAGGAACGCGG
CGTCTTCCTGCTGGCGGAGATGTCTGCCAGCGGCAACCTGATCGACGCCA
AGTACAAGGAGAACAGCAACAAGATCGCAACCGAGGGAGCCGATGTAGAT
TTCGTTGCCGGTGTGGTATGCCAATCCTCCGATGCCTTTGCCTTCCCCGG
ACTTCTGCAACTGACGCCCGGTGTGAAGATAGACGAGGGCGTGGACCAAT
TGGGCCAGCAGTACCAGAGTCCGGAGCATGTGGTCAAGGAGCGGGGTGCC
GACATCGGAGTGGTGGGCAGGGGCATTCTGAAGGCCAGCAGCCCGAAGCA
GGCGGCTCAGACGTACCGCGACCGCCTGTGGGCAGCCTACCAGGATCGAG
TTGCCAAGTAGAAAACCCAAACAGCATTCCCCCTTAACGAATATTCCCCA
ATACCCATTCCCCCTTGGTTTCGGTTACCCTAGATAAGTGAAAAAATCTT
CCAATTATTTACCGCGATTTTACAGTGCATTTATGAATTGAACATAGGCT
ATGAATCTTCCGCAAAACAGTTGGCAAACGATGCTTGCCTTAAAGTAAGA
GTTACAACAAATAGAATGGTTAACAATCGATCCAACGAGGAAATCCTTAG
TAGGAGGCCAGGCACTGCAAGACGTAGCTGTAGTCTCCGGAGAGGTCGTC
CTGGAAAGGAGATCAGTGGATGGTGAATGTGACCCAGCTTTGCCGTTGAG
TGTAAGCCAACTTTATTAGTTAATACAAGCACAAACTACGCATACGACTT
TGATGCGCCATAATTTACAATAAAAAAAGACATGTATACAAAATAAAAAT
ACGTAAAAATGTTAAATAAAAAAAAAAAAAAAAAAAA

LD45235.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
r-l.c 2207 r-l.c 187..2205 1..2019 10095 100 Plus
r-l-RA 2207 r-l-RA 187..2205 1..2019 10095 100 Plus
r-l.b 2151 r-l.b 187..1930 1..1744 8720 100 Plus
r-l.b 2151 r-l.b 1931..2149 1801..2019 1095 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16894429..16895698 2017..748 6290 99.7 Minus
chr3R 27901430 chr3R 16896360..16896877 749..232 2590 100 Minus
chr3R 27901430 chr3R 16896937..16897168 232..1 1160 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21070555..21071826 2019..748 6360 100 Minus
3R 32079331 3R 21072489..21073006 749..232 2590 100 Minus
3R 32079331 3R 21073066..21073297 232..1 1160 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20811386..20812657 2019..748 6360 100 Minus
3R 31820162 3R 20813320..20813837 749..232 2590 100 Minus
3R 31820162 3R 20813897..20814128 232..1 1160 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:31:34 has no hits.

LD45235.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:32:16 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16894429..16895696 750..2017 99 <- Minus
chr3R 16896360..16896876 233..749 100 <- Minus
chr3R 16896937..16897168 1..232 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:29 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 1..1482 80..1561 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:04 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 1..1482 80..1561 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:35 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 1..1482 80..1561 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:26 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 1..1482 80..1561 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:38 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 1..1482 80..1561 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:04 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 21..2037 1..2017 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:03 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 21..2037 1..2017 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:35 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 23..2039 1..2017 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:26 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 21..2037 1..2017 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:38 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
r-l-RA 23..2039 1..2017 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:16 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21070557..21071824 750..2017 100 <- Minus
3R 21072489..21073005 233..749 100 <- Minus
3R 21073066..21073297 1..232 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:16 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21070557..21071824 750..2017 100 <- Minus
3R 21072489..21073005 233..749 100 <- Minus
3R 21073066..21073297 1..232 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:16 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21070557..21071824 750..2017 100 <- Minus
3R 21072489..21073005 233..749 100 <- Minus
3R 21073066..21073297 1..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:35 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16896279..16897546 750..2017 100 <- Minus
arm_3R 16898211..16898727 233..749 100 <- Minus
arm_3R 16898788..16899019 1..232 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:45 Download gff for LD45235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20811388..20812655 750..2017 100 <- Minus
3R 20813320..20813836 233..749 100 <- Minus
3R 20813897..20814128 1..232 100   Minus

LD45235.pep Sequence

Translation from 79 to 1560

> LD45235.pep
MVAQNSDKMRALALKLFEINAFKFGDFKMKVGINSPVYFDLRVIVSYPDV
MQTVSDLLVEHIKDKQLSAKHVCGVPYTALPLATIVSVQQGTPMLVRRKE
AKAYGTKKLVEGIFNAGDTCLIVEDVVTSGSSILDTVRDLQGEGIVVTDA
VVVVDREQGGVANIAKHGVRMHSLFTLSFLLNTLHEAGRIEKSTVEAVAK
YIAAVQINSDGTFVGGDKGDVVRANDLQRTKLTYENRANLAKSAVAKRLF
NLIASKQTNLCLAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKF
IADLQALAQRHNFLLMEDRKFADIGNTVSLQYGKGIYKISSWADLVTAHT
LPGRSILQGLKAGLGEGGAGKERGVFLLAEMSASGNLIDAKYKENSNKIA
TEGADVDFVAGVVCQSSDAFAFPGLLQLTPGVKIDEGVDQLGQQYQSPEH
VVKERGADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVAK*

LD45235.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18521-PA 492 GF18521-PA 1..492 1..493 2373 92.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14926-PA 493 GG14926-PA 1..493 1..493 2524 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23167-PA 492 GH23167-PA 1..492 1..493 2200 83.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-PA 493 CG3593-PA 1..493 1..493 2486 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10304-PA 491 GI10304-PA 1..491 1..493 2114 80.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12682-PA 493 GL12682-PA 1..493 1..493 2311 90.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17544-PA 493 GA17544-PA 1..493 1..493 2322 90.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15107-PA 493 GM15107-PA 1..493 1..493 2575 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20011-PA 493 GD20011-PA 1..493 1..493 2583 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10158-PA 492 GJ10158-PA 1..492 1..493 2235 86.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13081-PA 494 GK13081-PA 1..494 1..493 2235 85.8 Plus

LD45235.hyp Sequence

Translation from 79 to 1560

> LD45235.hyp
MVAQNSDKMRALALKLFEINAFKFGDFKMKVGINSPVYFDLRVIVSYPDV
MQTVSDLLVEHIKDKQLSAKHVCGVPYTALPLATIVSVQQGTPMLVRRKE
AKAYGTKKLVEGIFNAGDTCLIVEDVVTSGSSILDTVRDLQGEGIVVTDA
VVVVDREQGGVANIAKHGVRMHSLFTLSFLLNTLHEAGRIEKSTVEAVAK
YIAAVQINSDGTFVGGDKGDVVRANDLQRTKLTYENRANLAKSAVAKRLF
NLIASKQTNLCLAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKF
IADLQALAQRHNFLLMEDRKFADIGNTVSLQYGKGIYKISSWADLVTAHT
LPGRSILQGLKAGLGEGGAGKERGVFLLAEMSASGNLIDAKYKENSNKIA
TEGADVDFVAGVVCQSSDAFAFPGLLQLTPGVKIDEGVDQLGQQYQSPEH
VVKERGADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVAK*

LD45235.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
r-l-PA 493 CG3593-PA 1..493 1..493 2486 100 Plus