BDGP Sequence Production Resources |
Search the DGRC for LD45235
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 452 |
Well: | 35 |
Vector: | pOT2 |
Associated Gene/Transcript | r-l-RA |
Protein status: | LD45235.pep: gold |
Preliminary Size: | 2093 |
Sequenced Size: | 2037 |
Gene | Date | Evidence |
---|---|---|
CG3593 | 2001-01-01 | Release 2 assignment |
CG3593 | 2001-09-19 | Blastp of sequenced clone |
CG3593 | 2003-01-01 | Sim4 clustering to Release 3 |
r-l | 2008-04-29 | Release 5.5 accounting |
r-l | 2008-08-15 | Release 5.9 accounting |
r-l | 2008-12-18 | 5.12 accounting |
2037 bp (2037 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058714
> LD45235.complete ACTCCCAATTGGACGGTTCTTATTGGAGCCTAGCTAGCACGTGTGTGAAG AATTAAGATCGAGATTTAGAATTGCCAGCATGGTTGCCCAGAACTCCGAC AAAATGCGGGCCCTGGCCCTGAAGCTCTTCGAGATCAATGCCTTCAAGTT CGGCGACTTCAAGATGAAAGTGGGCATAAATTCGCCGGTCTACTTCGACC TCCGAGTGATCGTCAGTTATCCGGATGTGATGCAAACCGTATCCGACCTG CTGGTGGAACACATCAAGGACAAGCAGCTGAGCGCCAAACACGTGTGCGG TGTTCCCTACACGGCGCTCCCGCTGGCCACCATTGTGTCCGTGCAGCAGG GAACTCCCATGCTGGTGCGGCGCAAGGAGGCCAAGGCGTACGGCACCAAG AAGCTGGTCGAGGGCATCTTCAATGCTGGCGACACCTGTCTGATTGTCGA GGACGTGGTCACCTCCGGCTCCAGCATCCTGGACACGGTGCGGGATCTGC AAGGCGAGGGCATTGTGGTCACCGACGCCGTGGTCGTCGTAGACCGTGAG CAGGGCGGAGTGGCCAACATCGCCAAGCACGGCGTGCGGATGCACTCGCT CTTCACGCTCTCCTTTCTGCTGAACACACTTCACGAGGCCGGGCGCATCG AGAAGTCCACAGTGGAGGCGGTGGCCAAGTACATCGCCGCCGTGCAAATC AACAGCGATGGTACCTTCGTCGGCGGCGATAAGGGCGACGTTGTCAGAGC CAACGACTTGCAGCGCACTAAACTGACCTACGAGAATCGCGCCAATCTGG CTAAGAGCGCGGTGGCCAAGCGCCTCTTCAACCTGATAGCCAGCAAACAG ACGAACCTCTGCTTGGCCGCCGACCTGACACACGCCGATGAGATCCTGGA CGTGGCCGACAAGTGCGGTCCGTACATTTGCCTGCTGAAGACGCACGTAG ACATTGTGGAGGATTTCAGTGATAAATTCATCGCTGACCTGCAAGCTCTG GCCCAGCGGCACAATTTCCTGCTGATGGAGGATCGCAAGTTTGCAGACAT CGGCAACACGGTGTCCCTGCAGTACGGCAAGGGCATCTATAAGATTTCCA GTTGGGCAGATCTGGTCACGGCCCACACCTTACCTGGACGTAGTATTCTG CAGGGTCTGAAGGCGGGCCTTGGCGAAGGAGGAGCCGGCAAGGAACGCGG CGTCTTCCTGCTGGCGGAGATGTCTGCCAGCGGCAACCTGATCGACGCCA AGTACAAGGAGAACAGCAACAAGATCGCAACCGAGGGAGCCGATGTAGAT TTCGTTGCCGGTGTGGTATGCCAATCCTCCGATGCCTTTGCCTTCCCCGG ACTTCTGCAACTGACGCCCGGTGTGAAGATAGACGAGGGCGTGGACCAAT TGGGCCAGCAGTACCAGAGTCCGGAGCATGTGGTCAAGGAGCGGGGTGCC GACATCGGAGTGGTGGGCAGGGGCATTCTGAAGGCCAGCAGCCCGAAGCA GGCGGCTCAGACGTACCGCGACCGCCTGTGGGCAGCCTACCAGGATCGAG TTGCCAAGTAGAAAACCCAAACAGCATTCCCCCTTAACGAATATTCCCCA ATACCCATTCCCCCTTGGTTTCGGTTACCCTAGATAAGTGAAAAAATCTT CCAATTATTTACCGCGATTTTACAGTGCATTTATGAATTGAACATAGGCT ATGAATCTTCCGCAAAACAGTTGGCAAACGATGCTTGCCTTAAAGTAAGA GTTACAACAAATAGAATGGTTAACAATCGATCCAACGAGGAAATCCTTAG TAGGAGGCCAGGCACTGCAAGACGTAGCTGTAGTCTCCGGAGAGGTCGTC CTGGAAAGGAGATCAGTGGATGGTGAATGTGACCCAGCTTTGCCGTTGAG TGTAAGCCAACTTTATTAGTTAATACAAGCACAAACTACGCATACGACTT TGATGCGCCATAATTTACAATAAAAAAAGACATGTATACAAAATAAAAAT ACGTAAAAATGTTAAATAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
r-l.c | 2207 | r-l.c | 187..2205 | 1..2019 | 10095 | 100 | Plus |
r-l-RA | 2207 | r-l-RA | 187..2205 | 1..2019 | 10095 | 100 | Plus |
r-l.b | 2151 | r-l.b | 187..1930 | 1..1744 | 8720 | 100 | Plus |
r-l.b | 2151 | r-l.b | 1931..2149 | 1801..2019 | 1095 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16894429..16895698 | 2017..748 | 6290 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 16896360..16896877 | 749..232 | 2590 | 100 | Minus |
chr3R | 27901430 | chr3R | 16896937..16897168 | 232..1 | 1160 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 21070555..21071826 | 2019..748 | 6360 | 100 | Minus |
3R | 32079331 | 3R | 21072489..21073006 | 749..232 | 2590 | 100 | Minus |
3R | 32079331 | 3R | 21073066..21073297 | 232..1 | 1160 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20811386..20812657 | 2019..748 | 6360 | 100 | Minus |
3R | 31820162 | 3R | 20813320..20813837 | 749..232 | 2590 | 100 | Minus |
3R | 31820162 | 3R | 20813897..20814128 | 232..1 | 1160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16894429..16895696 | 750..2017 | 99 | <- | Minus |
chr3R | 16896360..16896876 | 233..749 | 100 | <- | Minus |
chr3R | 16896937..16897168 | 1..232 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 1..1482 | 80..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 1..1482 | 80..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 1..1482 | 80..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 1..1482 | 80..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 1..1482 | 80..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 21..2037 | 1..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 21..2037 | 1..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 23..2039 | 1..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 21..2037 | 1..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
r-l-RA | 23..2039 | 1..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21070557..21071824 | 750..2017 | 100 | <- | Minus |
3R | 21072489..21073005 | 233..749 | 100 | <- | Minus |
3R | 21073066..21073297 | 1..232 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21070557..21071824 | 750..2017 | 100 | <- | Minus |
3R | 21072489..21073005 | 233..749 | 100 | <- | Minus |
3R | 21073066..21073297 | 1..232 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21070557..21071824 | 750..2017 | 100 | <- | Minus |
3R | 21072489..21073005 | 233..749 | 100 | <- | Minus |
3R | 21073066..21073297 | 1..232 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16896279..16897546 | 750..2017 | 100 | <- | Minus |
arm_3R | 16898211..16898727 | 233..749 | 100 | <- | Minus |
arm_3R | 16898788..16899019 | 1..232 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20811388..20812655 | 750..2017 | 100 | <- | Minus |
3R | 20813320..20813836 | 233..749 | 100 | <- | Minus |
3R | 20813897..20814128 | 1..232 | 100 | Minus |
Translation from 79 to 1560
> LD45235.pep MVAQNSDKMRALALKLFEINAFKFGDFKMKVGINSPVYFDLRVIVSYPDV MQTVSDLLVEHIKDKQLSAKHVCGVPYTALPLATIVSVQQGTPMLVRRKE AKAYGTKKLVEGIFNAGDTCLIVEDVVTSGSSILDTVRDLQGEGIVVTDA VVVVDREQGGVANIAKHGVRMHSLFTLSFLLNTLHEAGRIEKSTVEAVAK YIAAVQINSDGTFVGGDKGDVVRANDLQRTKLTYENRANLAKSAVAKRLF NLIASKQTNLCLAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKF IADLQALAQRHNFLLMEDRKFADIGNTVSLQYGKGIYKISSWADLVTAHT LPGRSILQGLKAGLGEGGAGKERGVFLLAEMSASGNLIDAKYKENSNKIA TEGADVDFVAGVVCQSSDAFAFPGLLQLTPGVKIDEGVDQLGQQYQSPEH VVKERGADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVAK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18521-PA | 492 | GF18521-PA | 1..492 | 1..493 | 2373 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14926-PA | 493 | GG14926-PA | 1..493 | 1..493 | 2524 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23167-PA | 492 | GH23167-PA | 1..492 | 1..493 | 2200 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
r-l-PA | 493 | CG3593-PA | 1..493 | 1..493 | 2486 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10304-PA | 491 | GI10304-PA | 1..491 | 1..493 | 2114 | 80.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12682-PA | 493 | GL12682-PA | 1..493 | 1..493 | 2311 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17544-PA | 493 | GA17544-PA | 1..493 | 1..493 | 2322 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15107-PA | 493 | GM15107-PA | 1..493 | 1..493 | 2575 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20011-PA | 493 | GD20011-PA | 1..493 | 1..493 | 2583 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10158-PA | 492 | GJ10158-PA | 1..492 | 1..493 | 2235 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13081-PA | 494 | GK13081-PA | 1..494 | 1..493 | 2235 | 85.8 | Plus |
Translation from 79 to 1560
> LD45235.hyp MVAQNSDKMRALALKLFEINAFKFGDFKMKVGINSPVYFDLRVIVSYPDV MQTVSDLLVEHIKDKQLSAKHVCGVPYTALPLATIVSVQQGTPMLVRRKE AKAYGTKKLVEGIFNAGDTCLIVEDVVTSGSSILDTVRDLQGEGIVVTDA VVVVDREQGGVANIAKHGVRMHSLFTLSFLLNTLHEAGRIEKSTVEAVAK YIAAVQINSDGTFVGGDKGDVVRANDLQRTKLTYENRANLAKSAVAKRLF NLIASKQTNLCLAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKF IADLQALAQRHNFLLMEDRKFADIGNTVSLQYGKGIYKISSWADLVTAHT LPGRSILQGLKAGLGEGGAGKERGVFLLAEMSASGNLIDAKYKENSNKIA TEGADVDFVAGVVCQSSDAFAFPGLLQLTPGVKIDEGVDQLGQQYQSPEH VVKERGADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVAK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
r-l-PA | 493 | CG3593-PA | 1..493 | 1..493 | 2486 | 100 | Plus |