Clone LD45244 Report

Search the DGRC for LD45244

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:452
Well:44
Vector:pOT2
Associated Gene/TranscriptTBCB-RA
Protein status:LD45244.pep: gold
Preliminary Size:1231
Sequenced Size:1145

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11242 2001-01-01 Release 2 assignment
CG11242 2003-01-01 Sim4 clustering to Release 3
CG11242 2003-01-14 Blastp of sequenced clone
CG11242 2008-04-29 Release 5.5 accounting
CG11242 2008-08-15 Release 5.9 accounting
CG11242 2008-12-18 5.12 accounting

Clone Sequence Records

LD45244.complete Sequence

1145 bp (1145 high quality bases) assembled on 2003-01-14

GenBank Submission: AY061489

> LD45244.complete
ACCCGCATACCACCCGGTTTTTCTGGAAAAGTTTACAAAACAATTTATCT
ATATTTATCAAAACTGTACACACGGAAGGCAAGATGTCGACTATAATTGA
AACCGGCAAGTCAGATTTCATCAAGGTGAATGTTTCCAACTCTCACAATG
ATGCAGTCGCCTTCGAGGTCAAGTTAGCCAAGGATCTAACAGTTGCCCAG
CTCAAGACCAAACTTGAGATACTGACGGGCGGATGTGCCGGTACCATGAA
GGTGCAGGTCTTCAAGGGTGACACCTGCGTGTCCACAATGGACAACAATG
ACGCCCAACTGGGTTACTATGCCAACAGTGATGGACTCCGGCTGCATGTC
GTCGATAGCTTTGCTACCTTCTCGTTCGACAGCGCTCCCGTTGAGAAATT
CGAACTGTCCAAAGATCAGTACGAACAGCGAACAGATTCTGTGCGCAACT
ACCTCAAGATTAATCGCATGGGCAAGTACAACGATGAGGAGATGCAACAG
GCGGAGGAGAAGAAGCGCCTTCAGGCGGAGGAGATCCAAAAACGGGCGGA
ACTTTGTGTACTGGGTGGCAGATGTGAGGTTACGGTTCCAGGTAATCCAA
CACGACGAGGAACAATCCGATACAATGGTCCGCTCGAAGGGAAAAGTGGT
CACTTTATTGGAGTGGAATACGACGAACCACTGGGGAAAAATAATGGAAG
TTTCGGTGGAAAGGCCTACTTTACGTGTGCCCCAAATTACGGCGGCTTTG
TATCACCATTATCCGTTACGGTTGGTGACTTTCCGCCGGAAGACTTCAAC
ATGGATGACGAGCTCTGAGAATACTGGGCACTCCCACACACAGGTCACAC
AATCTCGCATCGCACATGCCACCTTAAACAGAAGACTTACGAACCGCTAA
AACTATTTGTACGCATGAAAGAACATTACAAATTATAGTTATGCCATTTT
TTATTTATTAATTAAAACATCTATGTATGTATGTATATCAGATATTCTTA
CAACATGATTATTCGTAAATTCTATAATCGGCTTTATCATAACTGATTTA
ATGGTGTTCTCAATCATTTTGCATTGTTTTACATTAACTCAACCGTTTGT
AAATCAAAATAAATATCAGAAATAAGTAAAAAAAAAAAAAAAAAA

LD45244.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11242-RA 1551 CG11242-RA 107..1234 1..1128 5640 100 Plus
par-1.b 6017 par-1.b 5856..6017 1128..967 810 100 Minus
par-1.d 6026 par-1.d 5865..6026 1128..967 810 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15372677..15373105 1127..699 2145 100 Minus
chr2R 21145070 chr2R 15373350..15373725 580..205 1880 100 Minus
chr2R 21145070 chr2R 15373776..15373981 206..1 1030 100 Minus
chr2R 21145070 chr2R 15373166..15373289 700..577 620 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19485493..19485922 1128..699 2150 100 Minus
2R 25286936 2R 19486167..19486542 580..205 1880 100 Minus
2R 25286936 2R 19486593..19486798 206..1 1030 100 Minus
2R 25286936 2R 19485983..19486106 700..577 620 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19486692..19487121 1128..699 2150 100 Minus
2R 25260384 2R 19487366..19487741 580..205 1880 100 Minus
2R 25260384 2R 19487792..19487997 206..1 1030 100 Minus
2R 25260384 2R 19487182..19487305 700..577 620 100 Minus
Blast to na_te.dros performed 2019-03-16 20:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 347..431 961..882 123 67.1 Minus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6933..7017 961..882 123 67.1 Minus

LD45244.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:12:55 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15372677..15373103 701..1127 94 <- Minus
chr2R 15373166..15373287 579..700 100 <- Minus
chr2R 15373352..15373723 207..578 100 <- Minus
chr2R 15373776..15373981 1..206 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:30 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 1..735 84..818 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:00 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 1..735 84..818 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:40:17 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 1..735 84..818 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:53 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 1..735 84..818 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:54:14 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 1..735 84..818 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:58 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 38..1164 1..1127 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:00 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 38..1164 1..1127 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:17 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 40..1166 1..1127 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:53 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 38..1164 1..1127 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:14 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 40..1166 1..1127 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:12:55 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19485494..19485920 701..1127 100 <- Minus
2R 19485983..19486104 579..700 100 <- Minus
2R 19486169..19486540 207..578 100 <- Minus
2R 19486593..19486798 1..206 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:12:55 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19485494..19485920 701..1127 100 <- Minus
2R 19485983..19486104 579..700 100 <- Minus
2R 19486169..19486540 207..578 100 <- Minus
2R 19486593..19486798 1..206 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:12:55 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19485494..19485920 701..1127 100 <- Minus
2R 19485983..19486104 579..700 100 <- Minus
2R 19486169..19486540 207..578 100 <- Minus
2R 19486593..19486798 1..206 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:17 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15372999..15373425 701..1127 100 <- Minus
arm_2R 15373488..15373609 579..700 100 <- Minus
arm_2R 15373674..15374045 207..578 100 <- Minus
arm_2R 15374098..15374303 1..206 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:11 Download gff for LD45244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19486693..19487119 701..1127 100 <- Minus
2R 19487182..19487303 579..700 100 <- Minus
2R 19487368..19487739 207..578 100 <- Minus
2R 19487792..19487997 1..206 100   Minus

LD45244.hyp Sequence

Translation from 2 to 817

> LD45244.hyp
PHTTRFFWKSLQNNLSIFIKTVHTEGKMSTIIETGKSDFIKVNVSNSHND
AVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNND
AQLGYYANSDGLRLHVVDSFATFSFDSAPVEKFELSKDQYEQRTDSVRNY
LKINRMGKYNDEEMQQAEEKKRLQAEEIQKRAELCVLGGRCEVTVPGNPT
RRGTIRYNGPLEGKSGHFIGVEYDEPLGKNNGSFGGKAYFTCAPNYGGFV
SPLSVTVGDFPPEDFNMDDEL*

LD45244.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-PA 244 CG11242-PA 1..244 28..271 1280 100 Plus

LD45244.pep Sequence

Translation from 83 to 817

> LD45244.pep
MSTIIETGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGG
CAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVDSFATFSFDS
APVEKFELSKDQYEQRTDSVRNYLKINRMGKYNDEEMQQAEEKKRLQAEE
IQKRAELCVLGGRCEVTVPGNPTRRGTIRYNGPLEGKSGHFIGVEYDEPL
GKNNGSFGGKAYFTCAPNYGGFVSPLSVTVGDFPPEDFNMDDEL*

LD45244.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13181-PA 244 GF13181-PA 1..244 1..244 1118 83.2 Plus
Dana\GF20557-PA 67 GF20557-PA 1..47 1..47 170 72.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20905-PA 244 GG20905-PA 1..244 1..244 1267 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21682-PA 246 GH21682-PA 1..246 1..244 960 70.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-PA 244 CG11242-PA 1..244 1..244 1280 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18836-PA 246 GI18836-PA 1..246 1..244 945 69.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11533-PA 243 GL11533-PA 1..243 1..244 1056 78.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10860-PA 243 GA10860-PA 1..243 1..244 1054 78.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19827-PA 244 GM19827-PA 1..244 1..244 1299 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15215-PA 119 GD15215-PA 1..119 126..244 641 99.2 Plus
Dsim\GD15214-PA 407 GD15214-PA 336..405 1..70 357 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21864-PA 246 GJ21864-PA 1..246 1..244 997 74.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15705-PA 242 GK15705-PA 1..242 1..244 957 72.1 Plus
Dwil\GK17665-PA 79 GK17665-PA 40..79 127..166 151 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13843-PA 244 GE13843-PA 1..244 1..244 1257 95.5 Plus