BDGP Sequence Production Resources |
Search the DGRC for LD45244
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 452 |
Well: | 44 |
Vector: | pOT2 |
Associated Gene/Transcript | TBCB-RA |
Protein status: | LD45244.pep: gold |
Preliminary Size: | 1231 |
Sequenced Size: | 1145 |
Gene | Date | Evidence |
---|---|---|
CG11242 | 2001-01-01 | Release 2 assignment |
CG11242 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11242 | 2003-01-14 | Blastp of sequenced clone |
CG11242 | 2008-04-29 | Release 5.5 accounting |
CG11242 | 2008-08-15 | Release 5.9 accounting |
CG11242 | 2008-12-18 | 5.12 accounting |
1145 bp (1145 high quality bases) assembled on 2003-01-14
GenBank Submission: AY061489
> LD45244.complete ACCCGCATACCACCCGGTTTTTCTGGAAAAGTTTACAAAACAATTTATCT ATATTTATCAAAACTGTACACACGGAAGGCAAGATGTCGACTATAATTGA AACCGGCAAGTCAGATTTCATCAAGGTGAATGTTTCCAACTCTCACAATG ATGCAGTCGCCTTCGAGGTCAAGTTAGCCAAGGATCTAACAGTTGCCCAG CTCAAGACCAAACTTGAGATACTGACGGGCGGATGTGCCGGTACCATGAA GGTGCAGGTCTTCAAGGGTGACACCTGCGTGTCCACAATGGACAACAATG ACGCCCAACTGGGTTACTATGCCAACAGTGATGGACTCCGGCTGCATGTC GTCGATAGCTTTGCTACCTTCTCGTTCGACAGCGCTCCCGTTGAGAAATT CGAACTGTCCAAAGATCAGTACGAACAGCGAACAGATTCTGTGCGCAACT ACCTCAAGATTAATCGCATGGGCAAGTACAACGATGAGGAGATGCAACAG GCGGAGGAGAAGAAGCGCCTTCAGGCGGAGGAGATCCAAAAACGGGCGGA ACTTTGTGTACTGGGTGGCAGATGTGAGGTTACGGTTCCAGGTAATCCAA CACGACGAGGAACAATCCGATACAATGGTCCGCTCGAAGGGAAAAGTGGT CACTTTATTGGAGTGGAATACGACGAACCACTGGGGAAAAATAATGGAAG TTTCGGTGGAAAGGCCTACTTTACGTGTGCCCCAAATTACGGCGGCTTTG TATCACCATTATCCGTTACGGTTGGTGACTTTCCGCCGGAAGACTTCAAC ATGGATGACGAGCTCTGAGAATACTGGGCACTCCCACACACAGGTCACAC AATCTCGCATCGCACATGCCACCTTAAACAGAAGACTTACGAACCGCTAA AACTATTTGTACGCATGAAAGAACATTACAAATTATAGTTATGCCATTTT TTATTTATTAATTAAAACATCTATGTATGTATGTATATCAGATATTCTTA CAACATGATTATTCGTAAATTCTATAATCGGCTTTATCATAACTGATTTA ATGGTGTTCTCAATCATTTTGCATTGTTTTACATTAACTCAACCGTTTGT AAATCAAAATAAATATCAGAAATAAGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 15372677..15373105 | 1127..699 | 2145 | 100 | Minus |
chr2R | 21145070 | chr2R | 15373350..15373725 | 580..205 | 1880 | 100 | Minus |
chr2R | 21145070 | chr2R | 15373776..15373981 | 206..1 | 1030 | 100 | Minus |
chr2R | 21145070 | chr2R | 15373166..15373289 | 700..577 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 19485493..19485922 | 1128..699 | 2150 | 100 | Minus |
2R | 25286936 | 2R | 19486167..19486542 | 580..205 | 1880 | 100 | Minus |
2R | 25286936 | 2R | 19486593..19486798 | 206..1 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 19485983..19486106 | 700..577 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 19486692..19487121 | 1128..699 | 2150 | 100 | Minus |
2R | 25260384 | 2R | 19487366..19487741 | 580..205 | 1880 | 100 | Minus |
2R | 25260384 | 2R | 19487792..19487997 | 206..1 | 1030 | 100 | Minus |
2R | 25260384 | 2R | 19487182..19487305 | 700..577 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 347..431 | 961..882 | 123 | 67.1 | Minus |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 6933..7017 | 961..882 | 123 | 67.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 15372677..15373103 | 701..1127 | 94 | <- | Minus |
chr2R | 15373166..15373287 | 579..700 | 100 | <- | Minus |
chr2R | 15373352..15373723 | 207..578 | 100 | <- | Minus |
chr2R | 15373776..15373981 | 1..206 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11242-RA | 1..735 | 84..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11242-RA | 1..735 | 84..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TBCB-RA | 1..735 | 84..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11242-RA | 1..735 | 84..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TBCB-RA | 1..735 | 84..818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11242-RA | 38..1164 | 1..1127 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11242-RA | 38..1164 | 1..1127 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TBCB-RA | 40..1166 | 1..1127 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11242-RA | 38..1164 | 1..1127 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TBCB-RA | 40..1166 | 1..1127 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19485494..19485920 | 701..1127 | 100 | <- | Minus |
2R | 19485983..19486104 | 579..700 | 100 | <- | Minus |
2R | 19486169..19486540 | 207..578 | 100 | <- | Minus |
2R | 19486593..19486798 | 1..206 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19485494..19485920 | 701..1127 | 100 | <- | Minus |
2R | 19485983..19486104 | 579..700 | 100 | <- | Minus |
2R | 19486169..19486540 | 207..578 | 100 | <- | Minus |
2R | 19486593..19486798 | 1..206 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19485494..19485920 | 701..1127 | 100 | <- | Minus |
2R | 19485983..19486104 | 579..700 | 100 | <- | Minus |
2R | 19486169..19486540 | 207..578 | 100 | <- | Minus |
2R | 19486593..19486798 | 1..206 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 15372999..15373425 | 701..1127 | 100 | <- | Minus |
arm_2R | 15373488..15373609 | 579..700 | 100 | <- | Minus |
arm_2R | 15373674..15374045 | 207..578 | 100 | <- | Minus |
arm_2R | 15374098..15374303 | 1..206 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19486693..19487119 | 701..1127 | 100 | <- | Minus |
2R | 19487182..19487303 | 579..700 | 100 | <- | Minus |
2R | 19487368..19487739 | 207..578 | 100 | <- | Minus |
2R | 19487792..19487997 | 1..206 | 100 | Minus |
Translation from 2 to 817
> LD45244.hyp PHTTRFFWKSLQNNLSIFIKTVHTEGKMSTIIETGKSDFIKVNVSNSHND AVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNND AQLGYYANSDGLRLHVVDSFATFSFDSAPVEKFELSKDQYEQRTDSVRNY LKINRMGKYNDEEMQQAEEKKRLQAEEIQKRAELCVLGGRCEVTVPGNPT RRGTIRYNGPLEGKSGHFIGVEYDEPLGKNNGSFGGKAYFTCAPNYGGFV SPLSVTVGDFPPEDFNMDDEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TBCB-PA | 244 | CG11242-PA | 1..244 | 28..271 | 1280 | 100 | Plus |
Translation from 83 to 817
> LD45244.pep MSTIIETGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGG CAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVDSFATFSFDS APVEKFELSKDQYEQRTDSVRNYLKINRMGKYNDEEMQQAEEKKRLQAEE IQKRAELCVLGGRCEVTVPGNPTRRGTIRYNGPLEGKSGHFIGVEYDEPL GKNNGSFGGKAYFTCAPNYGGFVSPLSVTVGDFPPEDFNMDDEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13181-PA | 244 | GF13181-PA | 1..244 | 1..244 | 1118 | 83.2 | Plus |
Dana\GF20557-PA | 67 | GF20557-PA | 1..47 | 1..47 | 170 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20905-PA | 244 | GG20905-PA | 1..244 | 1..244 | 1267 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21682-PA | 246 | GH21682-PA | 1..246 | 1..244 | 960 | 70.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TBCB-PA | 244 | CG11242-PA | 1..244 | 1..244 | 1280 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18836-PA | 246 | GI18836-PA | 1..246 | 1..244 | 945 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11533-PA | 243 | GL11533-PA | 1..243 | 1..244 | 1056 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10860-PA | 243 | GA10860-PA | 1..243 | 1..244 | 1054 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19827-PA | 244 | GM19827-PA | 1..244 | 1..244 | 1299 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15215-PA | 119 | GD15215-PA | 1..119 | 126..244 | 641 | 99.2 | Plus |
Dsim\GD15214-PA | 407 | GD15214-PA | 336..405 | 1..70 | 357 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21864-PA | 246 | GJ21864-PA | 1..246 | 1..244 | 997 | 74.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15705-PA | 242 | GK15705-PA | 1..242 | 1..244 | 957 | 72.1 | Plus |
Dwil\GK17665-PA | 79 | GK17665-PA | 40..79 | 127..166 | 151 | 65 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13843-PA | 244 | GE13843-PA | 1..244 | 1..244 | 1257 | 95.5 | Plus |