Clone LD45245 Report

Search the DGRC for LD45245

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:452
Well:45
Vector:pOT2
Associated Gene/TranscriptCG5961-RA
Protein status:LD45245.pep: gold
Preliminary Size:1706
Sequenced Size:1640

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5961 2001-01-01 Release 2 assignment
CG5961 2001-11-29 Blastp of sequenced clone
CG5961 2003-01-01 Sim4 clustering to Release 3
CG5961 2008-04-29 Release 5.5 accounting
CG5961 2008-08-15 Release 5.9 accounting
CG5961 2008-12-18 5.12 accounting

Clone Sequence Records

LD45245.complete Sequence

1640 bp (1640 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069677

> LD45245.complete
CTCGTTTGCGTATTTGAATACTCTTAATCTTGGGGTCTTACCAATGGCCA
CATGTTGCTCCCAGTTGCATACAACTACGAAATTCTGGGGTGAAGCCCGC
GCCCAAAATCAGCAATACGCGCGGCCCTTTATTATAAGTTCTATTTTGTT
ACCAACTTCCGTACCTTTCCACATCGAATACTAAAATCTTTCAGACTAGT
TTCTAGCTCTAATCATGTCGGATGTGGACTCGGATGGCGAGGAGCCAACC
CGGAAAACGGGCACCAATGCACTGGATGAGTTCCGGGAGAACTGGCAGCG
GGAGCTGCAGGAACACACAACAAACACTGGATCCAGGAGCCATTCCGAGG
CTGGAGATCGCCTCACGGCGGCCAATTCCAATCTCAGCGAGGCTGATCTA
CTGCAGGCCAAGGCGGAGAGTCTCTATCGGACCGCTGTGCAGCTGGAGCA
GCGTGGCAAGGTCTACGACGCACTACCCTTCTACAGGAAGGCCACCCAAA
TCGTTCCGGATATTGAGTTCAGGTTCTACGAGCAGCAGAAGCAAAAGCTC
AGCAACGATGTCAGCAAGAAGTACCTCAATCTGGCTAACGATTTGGCCAA
GCAATTGGATCTAGGTCAGTCGGATGGGGAGGAGGTCGTGGACAACCTGT
ACGAAAAGTTCCAGCATGATTTGCGTCAGAAAAACATTTACAATGGCAAG
ATGATAGCATCCAGCCGTGATGCCAATGTCCTGACCACCGGTCTGCACTT
TGCCGACCTGCCGCCCGAGATTGTGATGCGCATCCTGCGCTGGGTGGTTT
CCGCCCAACTGGACATGCGCTCGCTAGAGCAGTGCGCTGCTGTTTGCAAA
GGTTTCTATGTCTACGCGCGGGATGAGGAGCTCTGGAGGCTAGCTTGTGT
CAAAGTATGGGGCCACAACGTTGGAACTCTAGAGGCCCAGGATTCGGATG
TAAGCAACGTGTTCCACTCCTGGCGAGACATGTTCATCCGCCGAGACCGA
GTTCTTTTCAACGGCTGCTACATCAGCAAGACTACGTACCTGAGAATGGG
CGAGAACAGCTTCCAGGATCAGTTCTACCGTCCTGTGCAACTGGTGGAGT
ACTATCGCTACATTCGCTTTCTGCCCGATGGCAAGGTGCTGATGATGACG
ACTGCCGATGAGCCGGCGCAAGGTGTATCCAAACTGAAGCACGTGAACAA
CGTACGGGCGGAAATGCTTCGGGGTCGCTATCGTCTCTTCGGGAGCACAG
TCACTCTGGTGCTGCAAAAGTCGCAGCAGCGAGGGCCGGCTAACGTGCGG
CAGAGGCGAGGGAGTATCATGCCAGTGGATGAGGACTCCTCACAGTTCCT
GATCGAGCTGCGCATCGCAGGCACCACCAAGCGCCGATGCGCCCAGTTGG
TTTGGTCACATTACACGCTCGTGCAGAAGCGCAACAAGGTGGACATCAGC
TCCGAGTTCGATTTGACCGAGGCCAAATATCCGGCGCTGAGGTTCTCAAC
CGTAAAGAGCTACCATCTTGATGCTGATGCACCATTGGCTTAGGTTAATT
AGAATTAGAATGGATTTCTGCAAGTTGGAAATAAAACAATATGTTTTGAA
ACCCTTTTAGAGGGGGAGTGGAAAAAAAAAAAAAAAAAAA

LD45245.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-RA 1674 CG5961-RA 50..1673 1..1624 8120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8283810..8284527 1621..904 3575 99.9 Minus
chr3R 27901430 chr3R 8284589..8285300 903..192 3485 99.3 Minus
chr3R 27901430 chr3R 8285362..8285555 194..1 955 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12458418..12459138 1624..904 3605 100 Minus
3R 32079331 3R 12459200..12459911 903..192 3560 100 Minus
3R 32079331 3R 12459973..12460166 194..1 970 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12199249..12199969 1624..904 3605 100 Minus
3R 31820162 3R 12200031..12200742 903..192 3560 100 Minus
3R 31820162 3R 12200804..12200997 194..1 970 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:07:22 has no hits.

LD45245.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:08:18 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8285362..8285555 1..194 99   Minus
chr3R 8283810..8284527 904..1621 99 <- Minus
chr3R 8284589..8285297 195..903 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:31 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 1..1329 215..1543 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:02 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RB 1..1329 215..1543 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:53:43 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 1..1329 215..1543 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:23 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 1..1329 215..1543 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:18 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 1..1329 215..1543 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:32 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 35..1655 1..1621 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:02 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 35..1655 1..1621 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:53:43 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 38..1658 1..1621 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:23 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 35..1655 1..1621 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:18 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5961-RA 38..1658 1..1621 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:18 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12458421..12459138 904..1621 100 <- Minus
3R 12459200..12459908 195..903 100 <- Minus
3R 12459973..12460166 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:18 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12458421..12459138 904..1621 100 <- Minus
3R 12459200..12459908 195..903 100 <- Minus
3R 12459973..12460166 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:18 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12458421..12459138 904..1621 100 <- Minus
3R 12459200..12459908 195..903 100 <- Minus
3R 12459973..12460166 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:53:43 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8284143..8284860 904..1621 100 <- Minus
arm_3R 8284922..8285630 195..903 100 <- Minus
arm_3R 8285695..8285888 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:53 Download gff for LD45245.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12200804..12200997 1..194 100   Minus
3R 12199252..12199969 904..1621 100 <- Minus
3R 12200031..12200739 195..903 100 <- Minus

LD45245.pep Sequence

Translation from 214 to 1542

> LD45245.pep
MSDVDSDGEEPTRKTGTNALDEFRENWQRELQEHTTNTGSRSHSEAGDRL
TAANSNLSEADLLQAKAESLYRTAVQLEQRGKVYDALPFYRKATQIVPDI
EFRFYEQQKQKLSNDVSKKYLNLANDLAKQLDLGQSDGEEVVDNLYEKFQ
HDLRQKNIYNGKMIASSRDANVLTTGLHFADLPPEIVMRILRWVVSAQLD
MRSLEQCAAVCKGFYVYARDEELWRLACVKVWGHNVGTLEAQDSDVSNVF
HSWRDMFIRRDRVLFNGCYISKTTYLRMGENSFQDQFYRPVQLVEYYRYI
RFLPDGKVLMMTTADEPAQGVSKLKHVNNVRAEMLRGRYRLFGSTVTLVL
QKSQQRGPANVRQRRGSIMPVDEDSSQFLIELRIAGTTKRRCAQLVWSHY
TLVQKRNKVDISSEFDLTEAKYPALRFSTVKSYHLDADAPLA*

LD45245.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17039-PA 438 GF17039-PA 1..437 1..441 1709 73.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17121-PA 445 GG17121-PA 1..445 1..442 2217 92.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19048-PA 437 GH19048-PA 2..437 6..442 1524 66.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-PB 442 CG5961-PB 1..442 1..442 2291 100 Plus
CG5961-PC 442 CG5961-PC 1..442 1..442 2291 100 Plus
CG5961-PA 442 CG5961-PA 1..442 1..442 2291 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24341-PA 434 GI24341-PA 2..434 6..442 1518 67.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27171-PA 443 GL27171-PA 1..443 1..442 1744 73 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19260-PA 443 GA19260-PA 1..443 1..442 1741 73.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26004-PA 446 GM26004-PA 1..446 1..442 2292 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20562-PA 446 GD20562-PA 1..446 1..442 2287 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10427-PA 440 GJ10427-PA 1..440 1..442 1488 65.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12109-PA 431 GK12109-PA 1..431 1..442 1656 71.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24513-PA 445 GE24513-PA 1..445 1..442 2220 92.6 Plus

LD45245.hyp Sequence

Translation from 214 to 1542

> LD45245.hyp
MSDVDSDGEEPTRKTGTNALDEFRENWQRELQEHTTNTGSRSHSEAGDRL
TAANSNLSEADLLQAKAESLYRTAVQLEQRGKVYDALPFYRKATQIVPDI
EFRFYEQQKQKLSNDVSKKYLNLANDLAKQLDLGQSDGEEVVDNLYEKFQ
HDLRQKNIYNGKMIASSRDANVLTTGLHFADLPPEIVMRILRWVVSAQLD
MRSLEQCAAVCKGFYVYARDEELWRLACVKVWGHNVGTLEAQDSDVSNVF
HSWRDMFIRRDRVLFNGCYISKTTYLRMGENSFQDQFYRPVQLVEYYRYI
RFLPDGKVLMMTTADEPAQGVSKLKHVNNVRAEMLRGRYRLFGSTVTLVL
QKSQQRGPANVRQRRGSIMPVDEDSSQFLIELRIAGTTKRRCAQLVWSHY
TLVQKRNKVDISSEFDLTEAKYPALRFSTVKSYHLDADAPLA*

LD45245.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5961-PB 442 CG5961-PB 1..442 1..442 2291 100 Plus
CG5961-PC 442 CG5961-PC 1..442 1..442 2291 100 Plus
CG5961-PA 442 CG5961-PA 1..442 1..442 2291 100 Plus