Clone LD45253 Report

Search the DGRC for LD45253

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:452
Well:53
Vector:pOT2
Associated Gene/TranscriptCG34159-RA
Protein status:LD45253.pep: gold
Preliminary Size:1088
Sequenced Size:958

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5739 2001-01-01 Release 2 assignment
CG34159 2008-04-29 Release 5.5 accounting
CG34159 2008-08-15 Release 5.9 accounting
CG34159 2008-12-18 5.12 accounting

Clone Sequence Records

LD45253.complete Sequence

958 bp (958 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122195

> LD45253.complete
CGACTGAAGAGAAAAGATTTATACGGAATATAAATAAATTTTCGGCGATA
AACAAGACAACTTGGGGAGATTAATTTTACTCAAGCACCTGACAACATGG
ATCGCAATAATGGACGCTATCCCTACAACATTAGGCGGCAGAACAGCGGG
CACAATGCGCCGCACAGCTACCATCACCACCATAACAACAATTCGGCGGC
GGGGGCGTCCAATTCGCCGGGATACAATAACCACAGTGCCGGAAACTCTC
CGTCCGTCGGTGGCCATAACAACAGCAATCCGCTCTACGCCTCCGCCGCC
GGACAGCAGCAGCAACAACAGCAACCACAGAGCCTGCCAATCTCGCAGCA
CGATGAGCTCATCCGGTACATCCGGGGGGCATGGATCAAGGTCTACGAAC
AGGGTCCACCTGTGCTGTACTGCAACGAATCCGACAATCAGCTGAAGAAC
TTTAAGCCATTCGATTTGGAGGAGTACTGGGGCCAGCGCCTGGTGCAGAA
CATCCATGTGACCACCACGCAGGCCGGTGGACACCAGTAGAAGCGGGAAT
CTGAACAGCGGACAACGGCATGTGCTCCATGTGGTAACGATTAATTAAAT
TATACATTTAAAAAGGGTGCCAGCTTCCTCCCGATTATTGACTAATTTCC
ATGCTATTGGAATTTACAATTTATGTTTGTTTGCTAACTGCTTTGGACTA
TTGTGTGTGTAAAAAAAAAAAAAACGATTTAAATCCACTGCCAGCTGAAA
GGCAAACCATGATTCAATAAAGTGTACATTGGCAAACGATTTTTATCCCT
GGCACCCTGAATCTAGCTTGCTATCTGCATTTAAGTGTTGTGCACTAAGC
GCGCTTAAAATTTGACCAGAACAACAATAAACAATCTAGAGCGTAGACAA
ATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAA
AAAAAAAA

LD45253.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG34159-RA 1031 CG34159-RA 79..983 1..905 4525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10201402..10201915 905..389 2505 99.4 Minus
chr2L 23010047 chr2L 10202263..10202542 392..113 1400 100 Minus
chr2L 23010047 chr2L 10203053..10203165 113..1 565 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10202518..10203034 905..389 2585 100 Minus
2L 23513712 2L 10203382..10203661 392..113 1400 100 Minus
2L 23513712 2L 10204172..10204284 113..1 565 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10202518..10203034 905..389 2585 100 Minus
2L 23513712 2L 10203382..10203661 392..113 1400 100 Minus
2L 23513712 2L 10204172..10204284 113..1 565 100 Minus
Blast to na_te.dros performed 2019-03-15 22:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1050..1138 241..330 131 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2537 122..339 127 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1594 304..340 124 84.2 Plus
roo 9092 roo DM_ROO 9092bp 1053..1121 289..358 122 65.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3257..3319 263..329 119 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2309..2364 303..358 118 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2659 268..329 117 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2408..2444 303..339 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6823 303..330 113 89.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2483 159..330 112 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6840..6907 268..330 111 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2303..2348 286..330 110 73.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2803..2851 302..350 110 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6829..6884 303..358 109 66.1 Plus

LD45253.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:32:17 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10201404..10201913 391..903 99 <- Minus
chr2L 10202265..10202541 114..390 100 <- Minus
chr2L 10203053..10203165 1..113 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:33 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 1..444 97..540 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:28 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 1..444 97..540 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:38 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 1..444 97..540 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:19 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 1..444 97..540 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:41 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 1..444 97..540 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:47:38 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 1..903 1..903 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:28 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 37..939 1..903 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:38 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 34..936 1..903 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:20 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 1..903 1..903 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:41 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34159-RA 34..936 1..903 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:17 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10202520..10203032 391..903 100 <- Minus
2L 10203384..10203660 114..390 100 <- Minus
2L 10204172..10204284 1..113 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:17 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10202520..10203032 391..903 100 <- Minus
2L 10203384..10203660 114..390 100 <- Minus
2L 10204172..10204284 1..113 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:17 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10202520..10203032 391..903 100 <- Minus
2L 10203384..10203660 114..390 100 <- Minus
2L 10204172..10204284 1..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:38 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10202520..10203032 391..903 100 <- Minus
arm_2L 10203384..10203660 114..390 100 <- Minus
arm_2L 10204172..10204284 1..113 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:58 Download gff for LD45253.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10202520..10203032 391..903 100 <- Minus
2L 10203384..10203660 114..390 100 <- Minus
2L 10204172..10204284 1..113 100   Minus

LD45253.pep Sequence

Translation from 96 to 539

> LD45253.pep
MDRNNGRYPYNIRRQNSGHNAPHSYHHHHNNNSAAGASNSPGYNNHSAGN
SPSVGGHNNSNPLYASAAGQQQQQQQPQSLPISQHDELIRYIRGAWIKVY
EQGPPVLYCNESDNQLKNFKPFDLEEYWGQRLVQNIHVTTTQAGGHQ*

LD45253.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14133-PA 141 GF14133-PA 1..141 1..147 405 62.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23974-PA 146 GG23974-PA 1..146 1..147 746 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10648-PA 154 GH10648-PA 1..152 1..141 328 58.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG34159-PA 147 CG34159-PA 1..147 1..147 819 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10835-PA 146 GI10835-PA 1..144 1..141 338 58.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19180-PA 1121 GL19180-PA 594..711 6..126 311 61.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25871-PA 144 GA25871-PA 1..144 1..147 429 66.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11951-PA 150 GM11951-PA 1..150 1..147 725 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22298-PA 150 GD22298-PA 1..150 1..147 733 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18287-PA 148 GJ18287-PA 1..146 1..141 360 59.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18699-PA 143 GK18699-PA 1..143 1..147 357 61.2 Plus
Dwil\GK18388-PA 143 GK18388-PA 1..143 1..147 357 61.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26373-PA 146 GE26373-PA 1..146 1..147 741 98 Plus

LD45253.hyp Sequence

Translation from 96 to 539

> LD45253.hyp
MDRNNGRYPYNIRRQNSGHNAPHSYHHHHNNNSAAGASNSPGYNNHSAGN
SPSVGGHNNSNPLYASAAGQQQQQQQPQSLPISQHDELIRYIRGAWIKVY
EQGPPVLYCNESDNQLKNFKPFDLEEYWGQRLVQNIHVTTTQAGGHQ*

LD45253.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG34159-PA 147 CG34159-PA 1..147 1..147 819 100 Plus