Clone LD45266 Report

Search the DGRC for LD45266

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:452
Well:66
Vector:pOT2
Associated Gene/TranscriptCG1575-RA
Protein status:LD45266.pep: gold
Preliminary Size:2247
Sequenced Size:2097

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1575 2001-01-01 Release 2 assignment
CG1575 2001-10-10 Blastp of sequenced clone
CG1575 2003-01-01 Sim4 clustering to Release 3
CG1575 2008-04-29 Release 5.5 accounting
CG1575 2008-08-15 Release 5.9 accounting
CG1575 2008-12-18 5.12 accounting

Clone Sequence Records

LD45266.complete Sequence

2097 bp (2097 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061490

> LD45266.complete
CACATGTTTTGATTGTTTTTAATTTGCAAATCCACCTCCGATATTCTGCA
GAGCTGGAAAAATGGGCGGCCACCACAAGAAGAACCTGCGTGCGGAGAAG
GCCAAAGTGAAGCTGAAGGGCGCCAAGCTGCCCAAGGGCCTGAACGTGAC
CAAGACGGACTTCAAGGTGCGCAAAATTGAGATTCGGGAGCAGCTGAAGG
AGTCCTCCTACTCGGAAACGGGCCAGCGACAGTTCAATCTCAAGGAGACA
CTGTCCCGTCTGAAGCATCATAGTGTCAAGTTCCGCACTGATGCACAGCG
CAATGTGCGCGACTCCCTGAAGTCCGGCAATGCGGACCATTTAATTGGTC
ATCTGAACGAGCTGTTCCAAGGAATTGCGGCCGGAGCTTTGGACATGGAG
GGGTCGGCGCGAAAGGAATCATTCAAGACCCTTGATGTTCTGCTAGAGGC
ACTGCAGCCACAAGCAGTGGCGCCCTTCTTCCATGTCATAGCCACCTATT
TGCGTTGCGCCATGACTCACGTGCTGCCCGCCATCCAGGAGGACTCGCTG
CTCATGCTCGACGTCCTACTGTTGCGCGTACCACCGGCTTTCTTGGCCGA
GCGGAGTGCCAGCACCATAATTGGCAACTTCATCGACATGATCTCCCGCG
CCCGCCACGACAACGAGCGTTCGAATCGAACGTTGACATTGAACCTGAGT
CAGGGCAAGCAGACGACTGTGAAGTGGCGCACCAAGGTGCTTATCCGTCT
GCAGCAGATCCTCAGCACGCTAGTCACCTCGAAGACGCCAAAGTCAGCCG
CTGCCCGTGTGGTTCACTTCGAGGAGATGCGTCCGCAATATTACAATGTG
CTGTGTCCCGTGCGCCATGACAATCGCAATCTGCATGCCATCCTCAATGA
ATCCAAGCTAACGGCGGAAGGCACTCAACTGCATACGTATGTGGAGCAAC
TGTTACCACTACTCCAGGACAACTGGATGGAGGTGCGGCCGCAGCAGCAA
CAACCTCTGCTCAACCAAGATGCGGCGGCCAGTCTGCATGTGGTGATTGG
TCTAATGAGTCTGCTCTGGAATCTAATTGAGCAGCATGAGGCGGAGCACA
ATACCACGGAGCTAAGCGATTGGCTGAGGAAAAACTATGCCCAGAAGTTC
CTGCTCAACTTTTTGGACAAGGACGGCAGTCGTTTTCCCTATCAACAGAT
ACCGCTGGCAACCAAGAATTCATCCAAGGACAAGGGAGCCGTAGATGGCG
GAGAACTTTGTATGCCACAAAACCTGGGTATTGTCCAGCTGGCCTGTAAG
TTCTTTCCGACTCCCGTCGAGAGACAGACTCAAATGTTTGCGCATTTAAT
TGAGTACATGCACGAGACTTTGAAACGCCTTAATTCGCTTTCGCCGGAGC
AGCAGCTCTCACTGGTGGCTTCACTGCGTGCGCTGCTCTTCGAAAACGCC
ACATCGCTGATGAAAATCGTGACGGAGCCGTTGACCAGCCTGCTGAGCGC
ATCCATTGATGCATATGTGAGCCAACGATTTACCACACGCGAAGGCGTTG
CCACTCGAGTGCTGAACCTTCTCTGCGAGATTGTGGAGCGTTCCGATTTG
TACACGCACTTTGGCGGCGAACAGAGATTCACTCCGTTTCTCAGCTATCT
GCCGCAACTGCTGCTGAAGCCAACAGTGGGTGAGAGTACATTGCGAGCCA
TGGCCACGCTCTGCCGCCAACTGAATGGAGTCTTCATGGCCGCTCTAGTC
CGTTCTGCTCCTGAGATAGTCAGTCACTTGGATAAGCTGCAGATCACGGG
CGATATCGAAGGCCAAGAGAAGTTCGAAAACCAAAAGCGTGTTCTTAACT
TGTTCTACTATGCCAGAGAATTGGATAAAGAGGGAAAACTGGAGCGTTCA
GTTAAGCAGCTGGAGGAGCGGGTGGAGAGCAAAGGAATTGCCGATTACCT
AAAGGCTGTACTCGGCTACAACTAGTGATTGCGGACGGGAATCCGCAATA
TACACAGTCAGATAATTTTGTTTAGCTTCTAAGTTTAATGTATACATTAT
ATTCCTTCTGCTTAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD45266.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1575-RA 2071 CG1575-RA 1..2068 1..2068 10340 100 Plus
CG1575.a 2089 CG1575.a 70..2086 52..2068 10085 100 Plus
CG2260-RA 2011 CG2260-RA 1959..2011 2068..2016 265 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8008940..8011007 1..2068 10190 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8117063..8119130 1..2068 10340 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8125161..8127228 1..2068 10340 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:43:05 has no hits.

LD45266.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:44:01 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8008940..8011007 1..2068 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:35 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 1..1914 62..1975 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:18 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 1..1914 62..1975 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:15 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 1..1914 62..1975 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:05 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 1..1914 62..1975 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:52:14 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 1..1914 62..1975 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:33 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 1..2068 1..2068 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:18 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 1..2068 1..2068 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:15 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 52..2119 1..2068 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:05 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 1..2068 1..2068 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:14 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
CG1575-RA 52..2119 1..2068 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:01 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
X 8117063..8119130 1..2068 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:01 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
X 8117063..8119130 1..2068 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:01 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
X 8117063..8119130 1..2068 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:15 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8011096..8013163 1..2068 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:18 Download gff for LD45266.complete
Subject Subject Range Query Range Percent Splice Strand
X 8125161..8127228 1..2068 100   Plus

LD45266.pep Sequence

Translation from 61 to 1974

> LD45266.pep
MGGHHKKNLRAEKAKVKLKGAKLPKGLNVTKTDFKVRKIEIREQLKESSY
SETGQRQFNLKETLSRLKHHSVKFRTDAQRNVRDSLKSGNADHLIGHLNE
LFQGIAAGALDMEGSARKESFKTLDVLLEALQPQAVAPFFHVIATYLRCA
MTHVLPAIQEDSLLMLDVLLLRVPPAFLAERSASTIIGNFIDMISRARHD
NERSNRTLTLNLSQGKQTTVKWRTKVLIRLQQILSTLVTSKTPKSAAARV
VHFEEMRPQYYNVLCPVRHDNRNLHAILNESKLTAEGTQLHTYVEQLLPL
LQDNWMEVRPQQQQPLLNQDAAASLHVVIGLMSLLWNLIEQHEAEHNTTE
LSDWLRKNYAQKFLLNFLDKDGSRFPYQQIPLATKNSSKDKGAVDGGELC
MPQNLGIVQLACKFFPTPVERQTQMFAHLIEYMHETLKRLNSLSPEQQLS
LVASLRALLFENATSLMKIVTEPLTSLLSASIDAYVSQRFTTREGVATRV
LNLLCEIVERSDLYTHFGGEQRFTPFLSYLPQLLLKPTVGESTLRAMATL
CRQLNGVFMAALVRSAPEIVSHLDKLQITGDIEGQEKFENQKRVLNLFYY
ARELDKEGKLERSVKQLEERVESKGIADYLKAVLGYN*

LD45266.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21301-PA 638 GF21301-PA 1..635 1..634 2637 77.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19292-PA 637 GG19292-PA 1..637 1..637 3040 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24092-PA 672 GH24092-PA 1..672 1..637 1697 56.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1575-PB 637 CG1575-PB 1..637 1..637 3230 100 Plus
CG1575-PA 637 CG1575-PA 1..637 1..637 3230 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14359-PA 650 GI14359-PA 1..649 1..636 1849 59.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20355-PA 699 GL20355-PA 1..624 1..616 2271 69.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13933-PA 659 GA13933-PA 1..659 1..637 2288 67.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11224-PA 637 GM11224-PA 1..637 1..637 3284 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16877-PA 637 GD16877-PA 1..637 1..637 3318 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19399-PA 353 GJ19399-PA 1..351 1..381 1046 61.1 Plus
Dvir\GJ19400-PA 248 GJ19400-PA 2..248 391..637 602 48.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14830-PA 648 GK14830-PA 1..648 1..637 1935 57.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15759-PA 637 GE15759-PA 1..637 1..637 3150 93.4 Plus

LD45266.hyp Sequence

Translation from 61 to 1974

> LD45266.hyp
MGGHHKKNLRAEKAKVKLKGAKLPKGLNVTKTDFKVRKIEIREQLKESSY
SETGQRQFNLKETLSRLKHHSVKFRTDAQRNVRDSLKSGNADHLIGHLNE
LFQGIAAGALDMEGSARKESFKTLDVLLEALQPQAVAPFFHVIATYLRCA
MTHVLPAIQEDSLLMLDVLLLRVPPAFLAERSASTIIGNFIDMISRARHD
NERSNRTLTLNLSQGKQTTVKWRTKVLIRLQQILSTLVTSKTPKSAAARV
VHFEEMRPQYYNVLCPVRHDNRNLHAILNESKLTAEGTQLHTYVEQLLPL
LQDNWMEVRPQQQQPLLNQDAAASLHVVIGLMSLLWNLIEQHEAEHNTTE
LSDWLRKNYAQKFLLNFLDKDGSRFPYQQIPLATKNSSKDKGAVDGGELC
MPQNLGIVQLACKFFPTPVERQTQMFAHLIEYMHETLKRLNSLSPEQQLS
LVASLRALLFENATSLMKIVTEPLTSLLSASIDAYVSQRFTTREGVATRV
LNLLCEIVERSDLYTHFGGEQRFTPFLSYLPQLLLKPTVGESTLRAMATL
CRQLNGVFMAALVRSAPEIVSHLDKLQITGDIEGQEKFENQKRVLNLFYY
ARELDKEGKLERSVKQLEERVESKGIADYLKAVLGYN*

LD45266.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1575-PB 637 CG1575-PB 1..637 1..637 3230 100 Plus
CG1575-PA 637 CG1575-PA 1..637 1..637 3230 100 Plus