Clone LD45288 Report

Search the DGRC for LD45288

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:452
Well:88
Vector:pOT2
Associated Gene/TranscriptSec22-RA
Protein status:LD45288.pep: gold
Preliminary Size:1802
Sequenced Size:1744

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7359 2001-01-01 Release 2 assignment
CG7359 2001-11-29 Blastp of sequenced clone
CG7359 2003-01-01 Sim4 clustering to Release 3
CG7359 2008-04-29 Release 5.5 accounting
CG7359 2008-08-15 Release 5.9 accounting
CG7359 2008-12-18 5.12 accounting

Clone Sequence Records

LD45288.complete Sequence

1744 bp (1744 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069680

> LD45288.complete
TGGTTACATTGCAACAAACATCCACAGAAACCTCCAATCCACTCCAATCC
CAGACACCCGCCCGCCGCGACGTTGCAACACAGTTTTCATGGTAGCAGCG
AACGTTCCCGATTCGAGGCAGAGTCCATTTGGAAGTCCCGGGCATCGCAG
GAGCACTGCGGCAAGCACCGACCGATCGGCTGAGTTGTGAAATCCAAGAA
GTGGAAGAGGACGACCGGACACAAACTTCACACACTGGTGACTGGACTGC
AGCGGATCCACATCGGAATAAGTAGCAGCCAGTGGAAGGAGGCGACGGCA
GAGTGCAGCCGTGGCCAAGAAGACTTGAGACGCAGCCCCGTAGTTCCGCG
AGCAATCGTAACCAGGAACAGCAGAAGCCATGGCGCTGCTGACCATGATA
GCCAGGGTCATCGATGGCCTTCCTCTGGTGGGGACCATGCAGGATGACGA
GCAGAGCGGACGCAGCATACTGGACTACCAAAACCAGGCTAAGATGCTCT
TCCGCAAGCTGGGTACCCACTCCCCGGCTCGATGCAGTATCGAGACCGGA
CCCTACCTATTCCACTACCTAATCGAGAACGACGTCTGCTACCTGGTGAT
GGTGGACAAGATGTACTCAAAGCGACTGGCCTTCAATTACCTGGAGGACC
TGGCCCAGGAGTTCCATGCTAACTACGGCCGGCGAGTAAACTCAGTGACT
CGCCCATACGCATTCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAA
ACAGTTGACGGACCGCAGACGCAACATCAGCAACATCAACACACAGCTGC
AGGATGTGCAGCGCATCATGGTGCAAAACATTGACGACGTGCTCCAACGT
GGCACAGTGCTGGCGGAACTCGACACCAAGACCCAGAACCTATCGATGAT
GTCACAGAAGTACAAGAAGGACGCCAAGCTGCTCAACCGAAAGTCCATGT
ACGTGAAGGCGATGGCCTTGGGCATGATACTTCTAGTGTTCATCATGTAT
TTCTGGGTTCTGTAATATCAAGCAGTTCCATGGCCACTCGGAGCGGCGCG
TTCTTTGTTGGAGTCAAGCGTCAAGGACGCAAGACCAAAAGACATTTAGA
TTACGCGTGCACCTGTACTCCACGCCACCAACCACACCATATTCATTCAT
ATCTATGAATCATAGGCAAGCGAAAAGTGAATAGCGAAACCCCCTACCAG
CATACGCATCGCTCCCGAGGATTGTTTTACTTCTAATATTAACTTACCTT
TGCGTTATTTACGGTCTGGGATTCCATTAATTATTAACTCCCATTTCATT
TCGCCTCGCGCTTCCGTTGCGCAGGTTTTCTAAATATTTGATTACGAATC
GGGTTTAGTTTAGACGACCTTTGAGCCAAGTCGGTTGACTACGACCCAAA
TCTGTAAATTATGAGCGTCGATCCGTGTGTGTGTGTATAAATGTCTAGAT
TGTAGATGGATCGCTGCATAGCGAATCCGAATCCGGCGGAGTGCTTGATA
CAAGCTGCAAAAACACCGCAAAAAACAAAAGAAAAAGAAAAGATAACAAG
CGAACCGAAAGAAAAGAAAAGAAGAGAAAGGGAAATAAACAATAACAGTT
TTAGGCAATTTATATGTGTAAAATTAAGGCAAATAAATAAATTTATATTG
TTTAATAAAGAGAAGGCAAAACTGTGTTCGATGCACTACCCAAGCCCGAA
AGATAGAAACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD45288.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-RA 1983 Sec22-RA 254..1967 1..1714 8570 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 701329..702176 866..1713 4225 99.9 Plus
chrX 22417052 chrX 700082..700535 1..454 2255 99.8 Plus
chrX 22417052 chrX 700945..701246 565..866 1495 99.7 Plus
chrX 22417052 chrX 700606..700718 452..564 550 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 807353..808201 866..1714 4245 100 Plus
X 23542271 X 806106..806559 1..454 2270 100 Plus
X 23542271 X 806969..807270 565..866 1510 100 Plus
X 23542271 X 806630..806742 452..564 565 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 815451..816299 866..1714 4245 100 Plus
X 23527363 X 814204..814657 1..454 2270 100 Plus
X 23527363 X 815067..815368 565..866 1510 100 Plus
X 23527363 X 814728..814840 452..564 565 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:08:19 has no hits.

LD45288.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:09:02 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 700945..701246 565..866 99 -> Plus
chrX 700082..700535 1..454 99 -> Plus
chrX 700609..700718 455..564 99 -> Plus
chrX 701330..701984 867..1521 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:38 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 1..636 380..1015 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:04 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 1..636 380..1015 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:53 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 1..636 380..1015 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:25 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 1..636 380..1015 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:49 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 1..636 380..1015 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:36 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 35..1747 1..1713 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:04 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 35..1747 1..1713 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:53 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 31..1743 1..1713 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:25 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
CG7359-RA 35..1747 1..1713 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:49 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
Sec22-RA 31..1743 1..1713 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:09:02 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
X 806633..806742 455..564 100 -> Plus
X 806969..807270 565..866 100 -> Plus
X 806106..806559 1..454 100 -> Plus
X 807354..808200 867..1713 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:09:02 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
X 806633..806742 455..564 100 -> Plus
X 806969..807270 565..866 100 -> Plus
X 806106..806559 1..454 100 -> Plus
X 807354..808200 867..1713 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:09:02 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
X 806633..806742 455..564 100 -> Plus
X 806969..807270 565..866 100 -> Plus
X 806106..806559 1..454 100 -> Plus
X 807354..808200 867..1713 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:53 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 700139..700592 1..454 100 -> Plus
arm_X 700666..700775 455..564 100 -> Plus
arm_X 701002..701303 565..866 100 -> Plus
arm_X 701387..702233 867..1713 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:56 Download gff for LD45288.complete
Subject Subject Range Query Range Percent Splice Strand
X 814204..814657 1..454 100 -> Plus
X 814731..814840 455..564 100 -> Plus
X 815067..815368 565..866 100 -> Plus
X 815452..816298 867..1713 100   Plus

LD45288.pep Sequence

Translation from 379 to 1014

> LD45288.pep
MALLTMIARVIDGLPLVGTMQDDEQSGRSILDYQNQAKMLFRKLGTHSPA
RCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYG
RRVNSVTRPYAFIEFDVYIQKAKKQLTDRRRNISNINTQLQDVQRIMVQN
IDDVLQRGTVLAELDTKTQNLSMMSQKYKKDAKLLNRKSMYVKAMALGMI
LLVFIMYFWVL*

LD45288.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22107-PA 211 GF22107-PA 1..211 1..211 1063 93.8 Plus
Dana\GF11075-PA 218 GF11075-PA 48..202 57..207 168 27.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12812-PA 211 GG12812-PA 1..211 1..211 1095 97.2 Plus
Dere\GG25257-PA 218 GG25257-PA 24..202 32..207 182 26.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12353-PA 211 GH12353-PA 1..211 1..211 1089 96.7 Plus
Dgri\GH21327-PA 219 GH21327-PA 48..202 57..207 188 33.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-PA 211 CG7359-PA 1..211 1..211 1075 100 Plus
Sec22-PB 213 CG7359-PB 1..213 1..211 1062 99.1 Plus
Vamp7-PC 218 CG1599-PC 35..202 43..207 191 28.4 Plus
Vamp7-PA 218 CG1599-PA 35..202 43..207 191 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15600-PA 211 GI15600-PA 1..211 1..211 1083 95.7 Plus
Dmoj\GI20745-PA 219 GI20745-PA 35..184 43..191 177 29.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14202-PA 211 GL14202-PA 1..211 1..211 1023 89.1 Plus
Dper\GL20026-PA 218 GL20026-PA 35..186 43..193 174 30.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20293-PA 211 GA20293-PA 1..211 1..211 1023 89.1 Plus
Dpse\GA14039-PA 218 GA14039-PA 35..186 43..193 173 30.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19093-PA 211 GM19093-PA 1..211 1..211 1122 99.5 Plus
Dsec\GM20575-PA 218 GM20575-PA 24..202 32..207 183 26.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16531-PA 211 GD16531-PA 1..211 1..211 1122 99.5 Plus
Dsim\GD10048-PA 218 GD10048-PA 24..202 32..207 183 26.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15203-PA 175 GJ15203-PA 1..164 1..164 850 96.3 Plus
Dvir\GJ20482-PA 219 GJ20482-PA 19..184 27..191 162 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24963-PA 211 GK24963-PA 1..211 1..211 1052 92.4 Plus
Dwil\GK20965-PA 219 GK20965-PA 24..205 32..210 181 29.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16642-PA 211 GE16642-PA 1..211 1..211 1091 96.7 Plus
Dyak\GE22017-PA 218 GE22017-PA 24..202 32..207 182 26.7 Plus

LD45288.hyp Sequence

Translation from 379 to 1014

> LD45288.hyp
MALLTMIARVIDGLPLVGTMQDDEQSGRSILDYQNQAKMLFRKLGTHSPA
RCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYG
RRVNSVTRPYAFIEFDVYIQKAKKQLTDRRRNISNINTQLQDVQRIMVQN
IDDVLQRGTVLAELDTKTQNLSMMSQKYKKDAKLLNRKSMYVKAMALGMI
LLVFIMYFWVL*

LD45288.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Sec22-PA 211 CG7359-PA 1..211 1..211 1075 100 Plus
Sec22-PB 213 CG7359-PB 1..213 1..211 1062 99.1 Plus
Vamp7-PC 218 CG1599-PC 35..202 43..207 191 28.4 Plus
Vamp7-PA 218 CG1599-PA 35..202 43..207 191 28.4 Plus