Clone LD45309 Report

Search the DGRC for LD45309

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:453
Well:9
Vector:pOT2
Associated Gene/TranscriptCG1971-RB
Protein status:LD45309.pep: gold
Sequenced Size:1051

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1971 2002-11-15 Blastp of sequenced clone
CG1971 2008-04-29 Release 5.5 accounting
CG1971 2008-08-15 Release 5.9 accounting
CG1971 2008-12-18 5.12 accounting

Clone Sequence Records

LD45309.complete Sequence

1051 bp (1051 high quality bases) assembled on 2002-11-15

GenBank Submission: BT003567

> LD45309.complete
GTAAACTTACTCCTTCCTGATTTCCTCCCAGTCTTTCTAAGTAATTTCGA
TGAAAAGGAGCAGGTGCGTCAACTCAGCTTATACCTTCACAACCTGCAAG
ACCGTTTGCGGCAGGGCATTCAGGAGCACCAGAAGGTAATGCAGTCGTCG
GTGCAGTTGCTCAAGGAGGTGGGCGATGTGAACGACATGATGCAGCTCGC
GAGGTGTGGCCACCGCGCCGGGGCCTCCAAGATACAGCGACTGATCGTGG
GTTTCGAGACGGTTAATGCTGTGAACGCCCCGCAAACCTCCGCCGTGGCG
GGCATGAGTTTGCCTTCTGACCTCACCGAGATTCAAGGTCTATTGGTGGA
ATTTGAGCACCTCAATGAAAGCCAAGTTCTGCGGGAGAGCCAGGAGAACT
TCAAACGTGCCCGAGACTCACTGGAGAAGGTTCTCGGCTTTCTAGAGAAG
ATTGGCAGCGAATCTTCACGGCCGTCTCCACAAGGAAGTCAGCTCTTTGG
GTGTCCCAGTGCCAGCCGCAGCCTGCGCGAGAAGATCGAAGCATTCAACA
AGGTCTTAGAGGCGGCCCCCGAGAAACTTGGGGATACCTGCCGTCATTTT
AAGGAGTGCTTTTGTAGCTGCTGCACCTTGGACGAGTCCTTCCTGTCTAA
AGGGCACAATCCCCTTCCCGTTGCCTCGAAAACAAATTCGGGCTACGAGG
GGGACATAGACAGCGAGGTAGAGCAGCCGGAGCGGTCCAATAACGAATCG
GGGGCGGATATAAGGGCCGATCGGTAAAAAATTGATATTGGTAAAGAGCA
AGCTTTAAACACAATTAATACAAATTAGTTGCATTTAGGAGTATCTTTTC
AATGCCTAGTAAGAATTTAAAGGACGATTATAGAAAAAATAAATTTTAGT
TGGTATAAGAAAGATGTAAATCCGTCAAAACTACATATTAAACTTTAAAT
AATATACAGGCAAAGGCACTATAATAATACCTCTTCAAATTAATATTTAA
ATACAGAAAATTGATTTTCATATCAGAGATATATAAAAAAAAAAAAAAAA
A

LD45309.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RB 1076 CG1971-RB 73..1076 1..1004 5020 100 Plus
CG1971-RA 1250 CG1971-RA 272..1250 31..1009 4895 100 Plus
CG1971.b 1016 CG1971.b 66..1016 54..1004 4755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27628094..27629127 1..1034 5155 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805736..31806771 1..1036 5180 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31546567..31547602 1..1036 5180 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:31:39 has no hits.

LD45309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:32:18 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27628094..27629127 1..1034 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:41 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 41..792 22..777 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:04:03 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 41..792 22..777 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:40 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 41..792 22..777 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:54:18 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 41..792 22..777 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:44 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 41..792 22..777 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:22:55 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 1..1010 1..1010 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:04:03 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 73..1106 1..1034 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:40 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 73..1106 1..1034 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:54:18 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 1..1010 1..1010 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:44 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RB 73..1106 1..1034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:18 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31805736..31806769 1..1034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:18 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31805736..31806769 1..1034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:32:18 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31805736..31806769 1..1034 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:40 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631458..27632491 1..1034 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:26:33 Download gff for LD45309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31546567..31547600 1..1034 100   Plus

LD45309.hyp Sequence

Translation from 0 to 776

> LD45309.hyp
VNLLLPDFLPVFLSNFDEKEQVRQLSLYLHNLQDRLRQGIQEHQKVMQSS
VQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQTSAVA
GMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVLGFLEK
IGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGDTCRHF
KECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPERSNNES
GADIRADR*

LD45309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 263 CG1971-PA 12..263 7..258 1277 98.8 Plus
CG1971-PD 212 CG1971-PD 1..212 47..258 1084 100 Plus
CG1971-PC 212 CG1971-PC 1..212 47..258 1084 100 Plus
CG1971-PB 212 CG1971-PB 1..212 47..258 1084 100 Plus

LD45309.pep Sequence

Translation from 138 to 776

> LD45309.pep
MQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQT
SAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVLG
FLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGDT
CRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPERS
NNESGADIRADR*

LD45309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17491-PA 265 GF17491-PA 54..245 2..195 608 63.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11835-PA 259 GG11835-PA 52..258 1..207 870 81.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13761-PA 243 GH13761-PA 47..239 1..201 263 37.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PD 212 CG1971-PD 1..212 1..212 1084 100 Plus
CG1971-PC 212 CG1971-PC 1..212 1..212 1084 100 Plus
CG1971-PB 212 CG1971-PB 1..212 1..212 1084 100 Plus
CG1971-PA 263 CG1971-PA 52..263 1..212 1084 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\Tes130-PA 184 GI24815-PA 1..174 11..195 221 35.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24027-PA 286 GL24027-PA 62..282 1..198 252 35.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15163-PB 250 GA15163-PB 25..246 1..198 256 35.2 Plus
Dpse\GA15163-PA 287 GA15163-PA 62..281 1..196 256 35.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16456-PA 237 GM16456-PA 29..236 1..207 956 88.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21607-PA 263 GD21607-PA 52..263 1..212 1006 90.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24459-PA 251 GJ24459-PA 47..238 1..198 326 40.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12159-PA 258 GK12159-PA 62..248 1..198 388 46.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10969-PA 255 GE10969-PA 52..249 1..198 854 83.8 Plus