Clone LD45317 Report

Search the DGRC for LD45317

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:453
Well:17
Vector:pOT2
Associated Gene/TranscriptIce2-RA
Protein status:LD45317.pep: gold
Preliminary Size:2619
Sequenced Size:2448

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10825 2001-01-01 Release 2 assignment
CG10825 2001-11-29 Blastp of sequenced clone
CG10825 2003-01-01 Sim4 clustering to Release 3
CG10825 2008-04-29 Release 5.5 accounting
CG10825 2008-08-15 Release 5.9 accounting
CG10825 2008-12-18 5.12 accounting

Clone Sequence Records

LD45317.complete Sequence

2448 bp (2448 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069681

> LD45317.complete
CCAACAGGTTCCTAAATAAACGTTTCCTCATTTATTTTATTTACTTTTTA
AAATATGCGAGCTTGAAATGGAAATATACCAAACATTATGCACTGCAGCT
TATCAACCAATGAATAGACTTCGCTTTAGACACAAGTTCCTCCCGTAAAT
ATAATAAACCAAAAACGTATTTGGAAAACTAAGTTTTCGAATGTTTTCAA
TGGACTCTTTTGCCATGGACAAGGATGCGAAGTTGTACGAAGGAAATGCT
CTATTCCGAAACCAGCCGTCGTACAAGGTGTTCAATAAATCCTTCGAGCA
CGTGGACGATGCGCTGTACACATTGCTGAACGAAGTGGAGCCAGATGTAC
TGCGAATGGAGCTCCAGGAAACGGGCGATCTCTTTAAGTCGTTCAATCGC
AACTCGGCCTTGAGGGATCCGCGCAACAACGAGGTGCCACCGAAACCGAC
TCGCGACCTCACCACCGCCAGTTCACTCTACAGCTTTCCCAATCCCCTGG
AGCAATACTCGGAGCTGAATCTTAAGCAACAGGCCGCCTGCATGCGAGTG
CTCCTCGCCTGGCAATGCAGTCAACCCGTCGATGAGCAGGACATCGTGGT
GTGGCAGGCAACGGAAAAGAAGCGATACAACGAGCAGCAGCGTGTGCAGA
AATACATACACGACCACGAGCAAGGACGCAAGGAAGTCATCTACGCGCCC
ATGAAGAGCCTGGTGGCGGTCTACAGAAAGTGGTACGAACTGGGTGTTAA
GAAACTTCAACAAACCTACCCCAATGACTCATATATGACCTTCTCCGGGC
TGCCACAGCTGCCCCAGTGCAGGAGTCTCAATGCTCAGACCGCCAGCATA
GAGCAGGTGGAGCTGGAGCGGATTGTCGGTCGGGTAAGACTCTTGCCAGA
GGTGGAAGTTCGCCATGAAGCCCTGCGGACATTACGACTGCGCTTGGATC
GCTATGCGACGAGAGAAACAAGGGCTCCTGTGCAGCTATTGCGGGAGGAA
GACAAGGAACTGGAACTCGAAGCTGGCAACGTCTTCGTGCTGCCCCTAGA
CTCGCTGTTAATGCTCCTTACCACCGGATCCTATATTGACCTGCCCACCG
AAATGTTTCTCAGCCTAAGAGAATCGCCAAACAGCAAGCACAAGTGCATG
GAGTTCCAGTCGCCATTCCCCCCCCGCAACTGTGGTTGGCATACGAACAG
TTTGATCTTGAAACTGGCTTATGGAGCCTACATTTCACAGCCCGGACAAG
CCAAGTGGCTGGATTTCAATATAAATGGAGCAGTCAAGGAGGTGCCAGAT
GAGCCTGCCTGTGATAAGTCATCCATCGATCTGCAGATGGTCTACAAGCC
TCGCGCAATCGATCAGCAACCATCAGACATTGAAGATGGCAACTGCAATA
GCGCCTTGGTTAGTTGGACCCTTAGATGTAAAGGCGAAGGCGATGATTGC
AACGATTTTCAAATCTTTAGCACACTATCCATACCAGCAGTTAAGGATTC
CAGCGGCAAGGAACCACTTGGATGCCACTTCATTAAGCTGGAGAACAAGC
CAGACTGCGGTTGCGAAATAATGTCCAAATACGAGTTGATAAGCGCCTGG
GTGCAGTTAAAGCTAATGCGGGCAGAGATGGGACACTGCACACGCATCTC
GCTACGGGATTTTGAGCCAATGCTGGAGGAGAAGCTGACGTTAATTTCGC
TGGAGCAGCAGCTTCATGACTATTATAACACAAGTATGCCGCAGCTACTG
TCCAACTTGTGTGAGTTTTTGAAGCTGCTGGACACGGTACCCGCTGGAGA
TTACCTGCTGCGATACTCACCCAAGTACAAGGATAAGTTCCTGCTGTGCA
TTGTCACCAAGGAGGCCACGCCACAGAGTTTTCAGCTACACCAGCTCCTC
ACGGAATCCATCCCCAGCGACCAAGCCTTCCTTACGCAAAGCAGCTACCT
TCCGATCTCGCCCACTCTTTGTGGCCGCCTGCACGAGGAGCTCCATCTAC
TGCCCTGTGCATTTCCAGCAAAAGCCAACGGTCGCTCTGTCCAGCGTCGA
AAGGTGGTGGTGCCCATACCAGAGCCCTCCAGACAAGCTCCAGTAAGACG
GCAACGTTTAAAAAAGTGGAGCGAAGCCCAAACTCGAGAATTTCGACGTC
GATGTAAGGTGGATCAAAAGAAAAGAGCTCGGGCTCGCAAGACAGCAGCG
GCCAACAAAGAAAAAATAGAGCTGGAGAAGATTATGACGTTGTAAAAACC
GCACTCTGATTGCATAAGTTGATTACTATTAGGGATGTAGTTACTAACTG
TTACAAAACCAAAAGGTGATCCCCATAGTGGAGTTAACCGCTCGGCGTAA
GGATAAGAGTTAAGTTTATATTGTTATGTATCGGAATAATAAAAATTGAA
CGCGGTGCTTGTGGCGCGAGCAACAAAAAAAAAAAAAAAAAAAAAAAA

LD45317.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10825-RA 2427 CG10825-RA 1..2427 1..2427 12135 100 Plus
CG10825-RB 2394 CG10825-RB 180..2383 224..2427 11020 100 Plus
CG10825-RC 2347 CG10825-RC 688..2307 808..2427 8100 100 Plus
CG10825-RC 2347 CG10825-RC 180..688 224..732 2545 100 Plus
CG10825-RB 2394 CG10825-RB 36..180 1..145 725 100 Plus
CG10825-RC 2347 CG10825-RC 36..180 1..145 725 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16954102..16956525 1..2424 11655 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21130254..21132680 1..2427 12135 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20871085..20873511 1..2427 12135 100 Plus
Blast to na_te.dros performed 2019-03-16 11:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 753..814 662..600 123 70.3 Minus

LD45317.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:08:37 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16954102..16956525 1..2424 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:28:42 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RA 1..2055 191..2245 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:56 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RA 1..2055 191..2245 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:58:27 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
Ice2-RA 1..2055 191..2245 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:20 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RA 1..2055 191..2245 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:00 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
Ice2-RA 1..2055 191..2245 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:27 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RA 1..2424 1..2424 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:56 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RA 1..2424 1..2424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:58:27 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
Ice2-RA 1..2424 1..2424 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:20 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
CG10825-RA 1..2424 1..2424 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:00 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
Ice2-RA 39..2462 1..2424 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:37 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21130254..21132677 1..2424 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:37 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21130254..21132677 1..2424 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:37 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21130254..21132677 1..2424 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:58:27 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16955976..16958399 1..2424 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:48 Download gff for LD45317.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20871085..20873508 1..2424 100   Plus

LD45317.hyp Sequence

Translation from 190 to 2244

> LD45317.hyp
MFSMDSFAMDKDAKLYEGNALFRNQPSYKVFNKSFEHVDDALYTLLNEVE
PDVLRMELQETGDLFKSFNRNSALRDPRNNEVPPKPTRDLTTASSLYSFP
NPLEQYSELNLKQQAACMRVLLAWQCSQPVDEQDIVVWQATEKKRYNEQQ
RVQKYIHDHEQGRKEVIYAPMKSLVAVYRKWYELGVKKLQQTYPNDSYMT
FSGLPQLPQCRSLNAQTASIEQVELERIVGRVRLLPEVEVRHEALRTLRL
RLDRYATRETRAPVQLLREEDKELELEAGNVFVLPLDSLLMLLTTGSYID
LPTEMFLSLRESPNSKHKCMEFQSPFPPRNCGWHTNSLILKLAYGAYISQ
PGQAKWLDFNINGAVKEVPDEPACDKSSIDLQMVYKPRAIDQQPSDIEDG
NCNSALVSWTLRCKGEGDDCNDFQIFSTLSIPAVKDSSGKEPLGCHFIKL
ENKPDCGCEIMSKYELISAWVQLKLMRAEMGHCTRISLRDFEPMLEEKLT
LISLEQQLHDYYNTSMPQLLSNLCEFLKLLDTVPAGDYLLRYSPKYKDKF
LLCIVTKEATPQSFQLHQLLTESIPSDQAFLTQSSYLPISPTLCGRLHEE
LHLLPCAFPAKANGRSVQRRKVVVPIPEPSRQAPVRRQRLKKWSEAQTRE
FRRRCKVDQKKRARARKTAAANKEKIELEKIMTL*

LD45317.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ice2-PA 684 CG10825-PA 1..684 1..684 3584 100 Plus
Ice2-PC 394 CG10825-PC 1..394 291..684 2086 100 Plus

LD45317.pep Sequence

Translation from 190 to 2244

> LD45317.pep
MFSMDSFAMDKDAKLYEGNALFRNQPSYKVFNKSFEHVDDALYTLLNEVE
PDVLRMELQETGDLFKSFNRNSALRDPRNNEVPPKPTRDLTTASSLYSFP
NPLEQYSELNLKQQAACMRVLLAWQCSQPVDEQDIVVWQATEKKRYNEQQ
RVQKYIHDHEQGRKEVIYAPMKSLVAVYRKWYELGVKKLQQTYPNDSYMT
FSGLPQLPQCRSLNAQTASIEQVELERIVGRVRLLPEVEVRHEALRTLRL
RLDRYATRETRAPVQLLREEDKELELEAGNVFVLPLDSLLMLLTTGSYID
LPTEMFLSLRESPNSKHKCMEFQSPFPPRNCGWHTNSLILKLAYGAYISQ
PGQAKWLDFNINGAVKEVPDEPACDKSSIDLQMVYKPRAIDQQPSDIEDG
NCNSALVSWTLRCKGEGDDCNDFQIFSTLSIPAVKDSSGKEPLGCHFIKL
ENKPDCGCEIMSKYELISAWVQLKLMRAEMGHCTRISLRDFEPMLEEKLT
LISLEQQLHDYYNTSMPQLLSNLCEFLKLLDTVPAGDYLLRYSPKYKDKF
LLCIVTKEATPQSFQLHQLLTESIPSDQAFLTQSSYLPISPTLCGRLHEE
LHLLPCAFPAKANGRSVQRRKVVVPIPEPSRQAPVRRQRLKKWSEAQTRE
FRRRCKVDQKKRARARKTAAANKEKIELEKIMTL*

LD45317.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16500-PA 667 GF16500-PA 2..667 12..684 2035 59.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24399-PA 678 GG24399-PA 4..678 10..684 3066 89.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17292-PA 659 GH17292-PA 4..607 14..621 1564 53.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ice2-PA 684 CG10825-PA 1..684 1..684 3584 100 Plus
Ice2-PC 394 CG10825-PC 1..394 291..684 2086 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23872-PA 669 GI23872-PA 2..669 12..684 1420 46 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12008-PA 669 GL12008-PA 5..669 15..684 2006 56.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10581-PA 669 GA10581-PA 5..669 15..684 1997 56.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15068-PA 675 GM15068-PA 1..675 9..684 3179 92.6 Plus
Dsec\GM13639-PA 403 GM13639-PA 1..399 1..399 1849 92 Plus
Dsec\GM13640-PA 223 GM13640-PA 1..223 461..684 1024 92.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19400-PA 676 GD19400-PA 1..676 9..684 3222 93.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23962-PA 671 GJ23962-PA 2..671 12..684 1474 48.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19181-PA 621 GK19181-PA 1..621 64..684 1136 45.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25710-PA 676 GE25710-PA 1..676 9..684 3167 88 Plus