BDGP Sequence Production Resources |
Search the DGRC for LD45505
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 455 |
Well: | 5 |
Vector: | pOT2 |
Associated Gene/Transcript | neur-RB |
Protein status: | LD45505.pep: gold |
Preliminary Size: | 2698 |
Sequenced Size: | 2656 |
Gene | Date | Evidence |
---|---|---|
CG11988 | 2001-01-01 | Release 2 assignment |
CG11988 | 2001-07-04 | Blastp of sequenced clone |
CG11988 | 2003-01-01 | Sim4 clustering to Release 3 |
neur | 2008-04-29 | Release 5.5 accounting |
neur | 2008-08-15 | Release 5.9 accounting |
neur | 2008-12-18 | 5.12 accounting |
2656 bp (2656 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051987
> LD45505.complete AAAGGTTGTCTCGAAGTTGTCGTCGTCGGTCTTTGTGTTTCGTATCGTTT CGTTTCGTTTGTTCCCGTTGCGCGCAGACAAACAACCAACCAAATTCAAA ATGTTTTAACGGAAAACATTCAAATTCGAAGAAGAACTCTATCGCTTAAT TTAATGCCAAATAAAATACGCAAGCAGCTTGTGCATTTTCATTAGCATTA CGCGTGTTCGTTTAGTTCGTCTGTTTTAATTTAAATAACGAAATAAGAAA TAATCCACTACCATGGGTCTATCGGATATACCAGCCAACTATATGCAGGG CAGCCATCCGCACCTAACTCTCCATCCGCAGCAGCAGCACCACCAGAATC AGCAGCACTTGCAGCATCTGCAACAGATGCAGCAGCTGCACAACGCCATG CCCACTCCCGCCCAGCAGGCCGCCCAGGTCCTGGCCATGGAGTCCAACGA GCTGCTCATGAGCACCAAGGACAAGCTCTCTAGCAAGAAGAAAATGCACT TGCTCAAGAAGATCAAGAAGCGCTTTGGATTGGTTCGCCGCTCACCCTCT TCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCACTCCGTACA TGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCGTCGCTTTG AGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTCGCATCAAC GAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGGAACGGTGG AATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGAGGGAACGC TGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCTTCTGGGCC AAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTTTACTACTA TGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGAGGAGAAGG GTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGACGGTGATC GATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCTCGCATTTA CATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGTGCCCGCCC AGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCGCCCTGAAT TCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGACACACTGC GGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCTGCAATCCC TGCACTTGGCAGGAAACGGTGGAAGCGTGGCTAGCGTAGAACAGGCGGCC ATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTACAATGCCAA CGGACGACTGATTCCAGTGCCCTTCCACAACACCAAGGGCCGGAATGTGC GGCTCTCGCAGGATCGCTTTGTGGCTTCTCGTACGGAATCTGACTTCTGC CAGGGATATGTGTTCACTGCCCGTCCCATTCGCATTGGTGAGAAGCTGAT TGTGCAGGTCCTGAAAACGGAACAGATGTACGTGGGTGCCTTGGCTTTGG GTCTGACCTCCTGCAATCCGGCCATGTTGCAGCCCAATGATTTGCCCAAT GATTCGGATTTCCTGCTCGATCGCCCCGAGTACTGGGTGGTGAGCAAGGA TATTGCAGCTGCTCCTCAGCGCGGCGATGAGATTGCCTTCTTCGTGGCGC CCAACGGTGAAGTGAGCATCAGCAAGAACAACGGACCAGCTGTGGTGGTG ATGCATGTGGACCAGTCCCTCCAGCTGTGGGCCTTCCTGGATGTCTACGG CTCGACGCAGTCTCTGAGGATGTTCCGCCAGCAGTTACCCAACATGGTTG CGTATCCATCGCAGCCGCAGGTCAATGTGAATGCCAGCAGCTCGTCCGCC TGCAACGCTGCCTCCACGTCCCGCATGCTGCCCATGACCGAGTCGATGAG CAGTCTGAATGCCGGAGCCACTGCCAAGCTGTTGCATCATCCCTCGCAGC TGAGCGTAGCCCAGAGTACGAGCACTTTGGCCTCAGCTGGCGGAGTCAAT GGCAGCCGCATGATCAGCATGCCCTCCAACGGAGATATTCTCCAGATCCA GCCGAATGGTGGTGGCACCGTTCTGGTGGTCAACCTGCCACCTGCTAGCA GCTCGCACGATATAAACGGCCAACTCGCGGCCAGGCCAACGGCCACGGTA ACCTCCAGCGGTGTTCTGGCCGGAGCCTGCTCCAGCGGCACCCTTATCAG CACCACCAGCAGCCAGTACATCGAGCCCATTGCCAATAGCACAAATAATG CGGCCAACAAGTGGAAGGACAGCCTGAGCGACCAGCAGAGCACCGATTCG AGTGCCGAATGCACCATCTGCTACGAGAATCCCATCGACTCGGTGCTGTA CATGTGCGGACACATGTGCATGTGCTACGACTGCGCCATCGAGCAGTGGC GCGGAGTGGGTGGTGGCCAGTGCCCACTGTGCCGGGCGGTGATCCGGGAC GTCATCCGCACCTACACCACGTAGAAAGGTCGCGGGCGTTTCCTAGCCAA GCAACATTTACTCGCAATCAAACCTACTAAAGCTACACATTATACCATAC ACACAAGTTGTTGCATTTTAAACGCAATTGAGCGCTTAAAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4847998..4849740 | 2275..533 | 8670 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 4859068..4859600 | 533..1 | 2665 | 100 | Minus |
chr3R | 27901430 | chr3R | 4847576..4847937 | 2635..2274 | 1795 | 99.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9022104..9023846 | 2275..533 | 8715 | 100 | Minus |
3R | 32079331 | 3R | 9033179..9033711 | 533..1 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 9021682..9022043 | 2635..2274 | 1810 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8762935..8764677 | 2275..533 | 8715 | 100 | Minus |
3R | 31820162 | 3R | 8774010..8774542 | 533..1 | 2665 | 100 | Minus |
3R | 31820162 | 3R | 8762513..8762874 | 2635..2274 | 1810 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4847574..4847935 | 2276..2637 | 99 | <- | Minus |
chr3R | 4847998..4849739 | 534..2275 | 99 | <- | Minus |
chr3R | 4859068..4859210 | 391..533 | 100 | == | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 1..2262 | 263..2524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 1..2262 | 263..2524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 1..2262 | 263..2524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 1..2262 | 263..2524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 1..2262 | 263..2524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 17..2651 | 1..2637 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 17..2651 | 1..2637 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 21..2655 | 1..2637 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 17..2651 | 1..2637 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RB | 21..2655 | 1..2637 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9021680..9022041 | 2276..2637 | 99 | <- | Minus |
3R | 9022104..9023845 | 534..2275 | 100 | <- | Minus |
3R | 9033179..9033711 | 1..533 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9021680..9022041 | 2276..2637 | 99 | <- | Minus |
3R | 9022104..9023845 | 534..2275 | 100 | <- | Minus |
3R | 9033179..9033711 | 1..533 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9021680..9022041 | 2276..2637 | 99 | <- | Minus |
3R | 9022104..9023845 | 534..2275 | 100 | <- | Minus |
3R | 9033179..9033711 | 1..533 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4847402..4847763 | 2276..2637 | 99 | <- | Minus |
arm_3R | 4847826..4849567 | 534..2275 | 100 | <- | Minus |
arm_3R | 4858901..4859433 | 1..533 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8762511..8762872 | 2276..2637 | 99 | <- | Minus |
3R | 8762935..8764676 | 534..2275 | 100 | <- | Minus |
3R | 8774010..8774542 | 1..533 | 100 | Minus |
Translation from 262 to 2523
> LD45505.pep MGLSDIPANYMQGSHPHLTLHPQQQHHQNQQHLQHLQQMQQLHNAMPTPA QQAAQVLAMESNELLMSTKDKLSSKKKMHLLKKIKKRFGLVRRSPSSCPG PNNLPPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERIC VKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLTNRPGFWAKALH EQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYG NCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQQMPQPAANASSALNSHHP HQQSRRSLPGHTAAIEHDLERHVMPSLQSLHLAGNGGSVASVEQAAIAHD LANGLPPLRYNANGRLIPVPFHNTKGRNVRLSQDRFVASRTESDFCQGYV FTARPIRIGEKLIVQVLKTEQMYVGALALGLTSCNPAMLQPNDLPNDSDF LLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNGEVSISKNNGPAVVVMHVD QSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYPSQPQVNVNASSSSACNAA STSRMLPMTESMSSLNAGATAKLLHHPSQLSVAQSTSTLASAGGVNGSRM ISMPSNGDILQIQPNGGGTVLVVNLPPASSSHDINGQLAARPTATVTSSG VLAGACSSGTLISTTSSQYIEPIANSTNNAANKWKDSLSDQQSTDSSAEC TICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGGQCPLCRAVIRDVIRT YTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18432-PA | 759 | GF18432-PA | 1..759 | 1..753 | 3561 | 90.8 | Plus |
Dana\GF11573-PA | 312 | GF11573-PA | 53..143 | 108..195 | 166 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17398-PA | 671 | GG17398-PA | 8..671 | 90..753 | 3539 | 98.3 | Plus |
Dere\GG23004-PA | 320 | GG23004-PA | 62..152 | 108..195 | 165 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18220-PA | 671 | GH18220-PA | 8..671 | 90..753 | 2791 | 81.4 | Plus |
Dgri\GH20356-PA | 311 | GH20356-PA | 52..143 | 107..195 | 173 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
neur-PB | 753 | CG11988-PB | 1..753 | 1..753 | 3955 | 100 | Plus |
neur-PA | 754 | CG11988-PA | 1..754 | 1..753 | 3943 | 99.9 | Plus |
neur-PD | 671 | CG11988-PD | 8..671 | 90..753 | 3486 | 99.8 | Plus |
neur-PE | 672 | CG11988-PE | 8..672 | 90..753 | 3474 | 99.7 | Plus |
neur-PC | 672 | CG11988-PC | 8..672 | 90..753 | 3474 | 99.7 | Plus |
CG3894-PC | 322 | CG3894-PC | 64..154 | 108..195 | 160 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10174-PA | 727 | GI10174-PA | 1..727 | 1..753 | 2881 | 77.4 | Plus |
Dmoj\GI11543-PA | 1782 | GI11543-PA | 13..407 | 109..515 | 179 | 22.5 | Plus |
Dmoj\GI20025-PA | 310 | GI20025-PA | 51..142 | 107..195 | 174 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12492-PA | 763 | GL12492-PA | 1..763 | 1..753 | 3320 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11314-PA | 765 | GA11314-PA | 1..765 | 1..753 | 3284 | 86 | Plus |
Dpse\GA22480-PA | 296 | GA22480-PA | 40..130 | 108..195 | 171 | 36.3 | Plus |
Dpse\GA22479-PA | 160 | GA22479-PA | 40..130 | 108..195 | 170 | 36.3 | Plus |
Dpse\GA17757-PA | 297 | GA17757-PA | 40..130 | 108..195 | 170 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26288-PA | 671 | GM26288-PA | 8..671 | 90..753 | 3556 | 98.9 | Plus |
Dsec\GM11897-PA | 322 | GM11897-PA | 64..154 | 108..195 | 165 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20824-PA | 671 | GD20824-PA | 8..671 | 90..753 | 3556 | 98.9 | Plus |
Dsim\GD11895-PA | 322 | GD11895-PA | 64..154 | 108..195 | 164 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\neur-PA | 720 | GJ10875-PA | 17..720 | 55..753 | 2969 | 83.6 | Plus |
Dvir\GJ21273-PA | 310 | GJ21273-PA | 51..142 | 107..195 | 174 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11419-PA | 767 | GK11419-PA | 1..767 | 1..753 | 3229 | 81.4 | Plus |
Dwil\GK17149-PA | 1916 | GK17149-PA | 16..403 | 109..515 | 183 | 24.3 | Plus |
Dwil\GK21668-PA | 309 | GK21668-PA | 46..140 | 108..199 | 171 | 38.9 | Plus |
Dwil\GK17149-PA | 1916 | GK17149-PA | 245..410 | 107..259 | 159 | 26.6 | Plus |
Translation from 262 to 2523
> LD45505.hyp MGLSDIPANYMQGSHPHLTLHPQQQHHQNQQHLQHLQQMQQLHNAMPTPA QQAAQVLAMESNELLMSTKDKLSSKKKMHLLKKIKKRFGLVRRSPSSCPG PNNLPPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERIC VKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLTNRPGFWAKALH EQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYG NCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQQMPQPAANASSALNSHHP HQQSRRSLPGHTAAIEHDLERHVMPSLQSLHLAGNGGSVASVEQAAIAHD LANGLPPLRYNANGRLIPVPFHNTKGRNVRLSQDRFVASRTESDFCQGYV FTARPIRIGEKLIVQVLKTEQMYVGALALGLTSCNPAMLQPNDLPNDSDF LLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNGEVSISKNNGPAVVVMHVD QSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYPSQPQVNVNASSSSACNAA STSRMLPMTESMSSLNAGATAKLLHHPSQLSVAQSTSTLASAGGVNGSRM ISMPSNGDILQIQPNGGGTVLVVNLPPASSSHDINGQLAARPTATVTSSG VLAGACSSGTLISTTSSQYIEPIANSTNNAANKWKDSLSDQQSTDSSAEC TICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGGQCPLCRAVIRDVIRT YTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
neur-PB | 753 | CG11988-PB | 1..753 | 1..753 | 3955 | 100 | Plus |
neur-PA | 754 | CG11988-PA | 1..754 | 1..753 | 3943 | 99.9 | Plus |
neur-PD | 671 | CG11988-PD | 8..671 | 90..753 | 3486 | 99.8 | Plus |
neur-PE | 672 | CG11988-PE | 8..672 | 90..753 | 3474 | 99.7 | Plus |
neur-PC | 672 | CG11988-PC | 8..672 | 90..753 | 3474 | 99.7 | Plus |