Clone LD45607 Report

Search the DGRC for LD45607

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:456
Well:7
Vector:pOT2
Associated Gene/TranscriptCG4619-RA
Protein status:LD45607.pep: gold
Preliminary Size:2091
Sequenced Size:1915

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4619 2001-01-01 Release 2 assignment
CG4619 2001-10-10 Blastp of sequenced clone
CG4619 2003-01-01 Sim4 clustering to Release 3
CG4619 2008-04-29 Release 5.5 accounting
CG4619 2008-08-15 Release 5.9 accounting
CG4619 2008-12-18 5.12 accounting

Clone Sequence Records

LD45607.complete Sequence

1915 bp (1915 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061494

> LD45607.complete
ATTTAACGTATGCTTGCGGACTTGCACGTTGTTTTGTAAATTCATTACAT
AAATTGAGAAGAAGTGCATCCGATATGTACGCCCTGCTTCGCCGCTTTGC
CGGCGTCACCAACTTGGGATGTCCCATCAGAACCTACGCCTCCCTTACGC
CCAGAGATGTATTGCGGAGCAGCGATGAGACCGGCACACTGCTGACCCGC
TTCGCCAAGCACATTGCACTGGAGCGCTACAGGGATTCGGATCACGTGTT
GCCCAAGACGACGGTCCGGTACTCTGACTTCTTTCCCATCACGGACGACC
GGTACTTTCAGCGGACGGTAGAGAAAACGGATGCAGCCCAATTGCCCGCC
CTGATCATCCAGGCATCCAGCTATCGCTCCAATGCCGCTGTACCCATGTA
TGTGACTGCGCTTAACACGTTGGATAACCATGCGGCTAAACAGCTGGACA
AGATGGATACCGCCACAGTGCTCGAGACGCTCTACTCCTTTCTATTCCTC
ATACCAAGTTGGATAAAGCGATTGGATTTTTACCAAGCAGCCATGCAACG
ACTGGTCAGGGAGGATTTTCGCGGCAACAAGGAGCGATTCGTTCAGGTGT
GCTTCTATATGGGATTGCAAAAGAAGCAGGCCAAATCTTCTGAGGAATTC
CAGCAACTCCTGGAAGAGCATCTACAAACGCATTTGCCTGAACTAAATGA
AATGGACCTTGCCGTGGTCAGCAATGCGGCGTACAAAACCTCAACTTTGG
TAACCGGTGAGGCGAAAACGGCATACGAAGCAAGACTCGTTAATGCCATA
TTAAATCTGGAGATAAACACCGGAAGCGATGCCTTGCTGGTCTCCTTTGT
CAAGGCATTGCGTCTGCAGCAAGTCAAAGATGAACGAGTGTGCCAGCACC
TGCAAGATATCTGTCTGGATCCTGTAAAGATAACCCATATTGAACCCCGA
GGACTTGCCCATATCTTTGCATTCTTTGCCGAGCAGCTTTGGGATCAGAA
TGAATGCCTAACTGTCGTCGTAAAACGACTCATGACTCTTCTCAAGCCTG
GAGACCTGCGCTCCAAAGACTTGGCCACATTCCTGTGGGCCAGCGCTCAA
CTCAATTGTGCATTGACTCCTGAGGAAATCAGACAATTGGAACTGACCGC
CCTGCGCAAGCTGGATCATGGGGAGTACGAATATTTCCCTGACAACCTTG
TTGACACCTGCCTCTCTCTGTGCACTTTGGGTCACTACTCTAAGGATCTG
ATTAATGCAGCTGAAGAACTAAAAGCTGCCCAAAAACGCCAGCGAGCCCA
ACCCAAGGTGGATAGTCGTTTAATTGTGCTGCGATCTGCTGTGGCCATTG
AGCAGCCTTCAATTGCTAAAGTTAAAACAGAACGAGCTTTTAAAGAGTTT
GATGGAGCACCAGCTTATTTGCTAAAAGATCGCCCAGACTTGACGAAATA
CGCCCAGGAGCTGAGTGGCGACGCGGATGTGGAGGGCGTGGATGTGGTGT
GTCCCATTGTCGGAATAAATTTGCCAAGCTTACGAGTGCAGACAATGGGT
GCCCAGGAGAGTGTGTACTTTGTTGAACTGCTAACCGCAGAACAGACTCT
GAAATTCAGCAAGAAACCGACTTCATTAATACGTCTTAAGAAAAGACTTT
TGGAATCCCTTGGCCGAAAAGTTGTAGTACTAAACTCAACAGAAATGGCC
ACCAATGCAAAGGAACTCCGCCAGCTCCTAGAACCGGCAGCAAATGCAGG
AGAAGAATCCAAGGTTGCCCAAGGCGTGGGCAACTGAATTGTGTGATATA
ATATGGGGCCATATCGGCCTTCTAGGCTAGTTACAAATCGTAGCTTTATT
TAACAGTGTTTTATGTACTTGTACATATTATTTAAATATTAATAGCAAAA
AAAAAAAAAAAAAAA

LD45607.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4619-RB 2043 CG4619-RB 50..1946 1..1897 9485 100 Plus
CG4619-RA 2219 CG4619-RA 50..1946 1..1897 9485 100 Plus
CG5853-RA 2774 CG5853-RA 2663..2774 1897..1786 560 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9937802..9939484 1..1683 8325 99.6 Plus
chr2L 23010047 chr2L 9939541..9939757 1680..1896 1085 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9938890..9940572 1..1683 8400 99.9 Plus
2L 23513712 2L 9940629..9940846 1680..1897 1090 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9938890..9940572 1..1683 8400 99.9 Plus
2L 23513712 2L 9940629..9940846 1680..1897 1090 100 Plus
Blast to na_te.dros performed 2019-03-16 16:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tc1-2 1644 Tc1-2 TC1-2 1644bp 1419..1462 1891..1848 130 77.3 Minus

LD45607.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:47 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9937802..9939480 1..1679 99 -> Plus
chr2L 9939541..9939757 1680..1896 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:01 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RA 1..1713 75..1787 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:22 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RB 1..1713 75..1787 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:35 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RA 1..1713 75..1787 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:09 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RA 1..1713 75..1787 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:38:54 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RA 1..1713 75..1787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:40 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RA 26..1921 1..1896 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:22 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RA 26..1921 1..1896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:35 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RA 28..1923 1..1896 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:10 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RA 26..1921 1..1896 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:38:54 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
CG4619-RA 28..1923 1..1896 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:47 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9938890..9940568 1..1679 100 -> Plus
2L 9940629..9940845 1680..1896 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:47 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9938890..9940568 1..1679 100 -> Plus
2L 9940629..9940845 1680..1896 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:47 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9938890..9940568 1..1679 100 -> Plus
2L 9940629..9940845 1680..1896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:35 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9938890..9940568 1..1679 100 -> Plus
arm_2L 9940629..9940845 1680..1896 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:22 Download gff for LD45607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9938890..9940568 1..1679 100 -> Plus
2L 9940629..9940845 1680..1896 100   Plus

LD45607.hyp Sequence

Translation from 2 to 1786

> LD45607.hyp
LTYACGLARCFVNSLHKLRRSASDMYALLRRFAGVTNLGCPIRTYASLTP
RDVLRSSDETGTLLTRFAKHIALERYRDSDHVLPKTTVRYSDFFPITDDR
YFQRTVEKTDAAQLPALIIQASSYRSNAAVPMYVTALNTLDNHAAKQLDK
MDTATVLETLYSFLFLIPSWIKRLDFYQAAMQRLVREDFRGNKERFVQVC
FYMGLQKKQAKSSEEFQQLLEEHLQTHLPELNEMDLAVVSNAAYKTSTLV
TGEAKTAYEARLVNAILNLEINTGSDALLVSFVKALRLQQVKDERVCQHL
QDICLDPVKITHIEPRGLAHIFAFFAEQLWDQNECLTVVVKRLMTLLKPG
DLRSKDLATFLWASAQLNCALTPEEIRQLELTALRKLDHGEYEYFPDNLV
DTCLSLCTLGHYSKDLINAAEELKAAQKRQRAQPKVDSRLIVLRSAVAIE
QPSIAKVKTERAFKEFDGAPAYLLKDRPDLTKYAQELSGDADVEGVDVVC
PIVGINLPSLRVQTMGAQESVYFVELLTAEQTLKFSKKPTSLIRLKKRLL
ESLGRKVVVLNSTEMATNAKELRQLLEPAANAGEESKVAQGVGN*

LD45607.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4619-PB 570 CG4619-PB 1..570 25..594 2878 100 Plus
CG4619-PA 570 CG4619-PA 1..570 25..594 2878 100 Plus

LD45607.pep Sequence

Translation from 74 to 1786

> LD45607.pep
MYALLRRFAGVTNLGCPIRTYASLTPRDVLRSSDETGTLLTRFAKHIALE
RYRDSDHVLPKTTVRYSDFFPITDDRYFQRTVEKTDAAQLPALIIQASSY
RSNAAVPMYVTALNTLDNHAAKQLDKMDTATVLETLYSFLFLIPSWIKRL
DFYQAAMQRLVREDFRGNKERFVQVCFYMGLQKKQAKSSEEFQQLLEEHL
QTHLPELNEMDLAVVSNAAYKTSTLVTGEAKTAYEARLVNAILNLEINTG
SDALLVSFVKALRLQQVKDERVCQHLQDICLDPVKITHIEPRGLAHIFAF
FAEQLWDQNECLTVVVKRLMTLLKPGDLRSKDLATFLWASAQLNCALTPE
EIRQLELTALRKLDHGEYEYFPDNLVDTCLSLCTLGHYSKDLINAAEELK
AAQKRQRAQPKVDSRLIVLRSAVAIEQPSIAKVKTERAFKEFDGAPAYLL
KDRPDLTKYAQELSGDADVEGVDVVCPIVGINLPSLRVQTMGAQESVYFV
ELLTAEQTLKFSKKPTSLIRLKKRLLESLGRKVVVLNSTEMATNAKELRQ
LLEPAANAGEESKVAQGVGN*

LD45607.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15730-PA 571 GF15730-PA 1..571 1..570 2292 75.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10071-PA 571 GG10071-PA 1..571 1..570 2730 88.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11060-PA 573 GH11060-PA 1..567 1..565 1883 65 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4619-PB 570 CG4619-PB 1..570 1..570 2878 100 Plus
CG4619-PA 570 CG4619-PA 1..570 1..570 2878 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17577-PA 576 GI17577-PA 1..576 1..570 1817 62.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18948-PA 571 GL18948-PA 1..571 1..570 2240 72.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18307-PA 571 GA18307-PA 1..571 1..570 2248 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17821-PA 570 GM17821-PA 1..570 1..570 2887 94.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23642-PA 251 GD23642-PA 1..251 320..570 1239 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17919-PA 576 GJ17919-PA 1..576 1..570 1884 63.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15578-PA 567 GK15578-PA 1..566 1..569 1958 64.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18883-PA 571 GE18883-PA 1..571 1..570 2731 89 Plus