Clone LD45673 Report

Search the DGRC for LD45673

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:456
Well:73
Vector:pOT2
Associated Gene/TranscriptCG11456-RB
Protein status:LD45673.pep: gold
Sequenced Size:1810

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11456 2003-01-01 Sim4 clustering to Release 3
CG11456 2004-03-31 Blastp of sequenced clone
CG11456 2008-04-29 Release 5.5 accounting
CG11456 2008-08-15 Release 5.9 accounting
CG11456 2008-12-18 5.12 accounting

Clone Sequence Records

LD45673.complete Sequence

1810 bp (1810 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012483

> LD45673.complete
TGTTATTGAATTGCTGTTAATATCCCAATACGAAATGTAACTAATATAAA
ATGGAAAATTCTGCGCGAATCGTATATGTGTGCAGTCTCTGCCTTCGTCA
ATATGATCTCCAGGAGGATCTTCGAGGACATCTCGTCTACTTTCACGGCT
ATGAGCCCATCTCAACGCCCAGTGTCAAAAACAAAACTGCGAAGACTTCA
ACTAAGGAACAAACTGCAGCCGGCAGCAACAGCCAGGATAAGCAAACCGT
TGTGGAGCGATCGGAGAACTCGGAACCCCCGGCAAGTGAACTGCAGCCCA
TGCCTTTCAAGGACTTTCGGCTGGTGCTAAGGGCCAACATGTTAGAGCCG
TGCTCCTTTGGAAAGGAATGCCCCTTCAAGTTCCAAGATGCTACCAAAAT
GGAGCTCCACTGTAGTTGCCATAAGGGTGGCAGTTTTTCCTGCTGCGAAT
GTGGCATGGAACTGCCCAACTGGCGGCGGTGCTCGGCTCACCTGTGGAAA
GCCCACCAGGTGGATGTGGACCTACTAGTGTGTCCCGTTTTCGAATGCAA
CTACAAGTCGCCCATATCCGCTCTCGTGTGGCGCCACATGCAGGTTCACA
AAAAGTGGCGACCCAGGGTGCTCCGGTCACTGGCTGCCGTTCAGCGGAGA
AGAAAGCTCAAGGAACAGTCCGCAGAGATGGCCGCGCAACCTGCTGCTCT
GCCACCATCGTCAAAGAAAAACAAATACTATGCCGAGAAGACTTGCGAGA
TTTGCAATCGCAAGTTTGTCAACGGTAAAACGCTCTCTAAACACGTGAAG
ACTGTTCACAACAAAATCAAGCCATTTATCTGCAATGTGTGTGGCAAAAA
GACGGCTCGCAAGGCTAGCTTAATAGTGAGTTCAGATAGCACTTTACGAT
CTTCTTGCTACCTAATACTCTTTCCAGATTCACATGCGTCAGCACACGGG
CGAGAAGCCGCTGCAATGTGGCGAATGCAAGTTCTCCACTCGCGATCCCA
GTGTCCTGCACAAGCATCGGCAGCGTCATGATAGCCAGGACACAAGGAGC
AGCCTGAAATGTAGTCAGTGCGACTACTTCTGCATCCAAGCCAATGCTCT
TAAGCGCCACATGCGGCTCAATCATGCCGAAGCCTATAGGGACTTGTGCT
GTGATATCTGCAGCTTCACCTCAATTAATGTAGAACGACTACGAGCCCAC
AAACAGGATCATCGACAGGGCTTGATCACAAATTGTGAGGATTCTATGGA
TGCACGTGCCGCTGGCTTCAAGTATCCTCGAAAAGTGGGCGACAAGAACG
GGGAGATTTCAGCTGACTGTTTTATGCCGTTGGAGAGCGTGGATTCATTG
CCCCATGAACCAGCTCTGGATACGGGTGGTGTAACCATACCAGCTCCTCC
ATCTGAAGATACTCAATTTCCCACGTACTTAAAGGACTAAAATTATAACA
TTTTAAGTTGATAGATTAGGGCGATAATCATCCGGTTTCAGTTCGGTTTC
AAGATCAGCGCCGTTAAATCTAGTTTACGACAGAAATGTTTTCATTTGGG
CAGTTCACTAATAACTTGTCTACAGGACTTCGCAGACCAAGTGATCTGGA
GAATCCAAAAGTTATGCAACTCCTGTCCACTTGTTTGCTATAGTAATGAA
AATAAGTTACTACCGAGTTACAAAATAGATTTAAACGTTTATTGTCTGAG
TTTGAATCGAATATCAAAACATATTCACTATTTGAGAGTGCAACTGAGTA
GTACAGCAAAATGGAAAATAAAACACTCAATATAAAATTGTTAAAAAAAA
AAAAAAAAAA

LD45673.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11456-RB 1914 CG11456-RB 123..1914 1..1792 8960 100 Plus
CG11456-RA 1862 CG11456-RA 123..997 1..875 4375 100 Plus
CG11456-RA 1862 CG11456-RA 998..1862 928..1792 4325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20831424..20832379 350..1305 4780 100 Plus
chr3L 24539361 chr3L 20831022..20831372 1..351 1755 100 Plus
chr3L 24539361 chr3L 20833139..20833361 1570..1792 1115 100 Plus
chr3L 24539361 chr3L 20832440..20832607 1304..1471 840 100 Plus
chr3L 24539361 chr3L 20832947..20833045 1471..1569 495 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20842403..20843358 350..1305 4780 100 Plus
3L 28110227 3L 20842001..20842351 1..351 1755 100 Plus
3L 28110227 3L 20844118..20844342 1570..1794 1125 100 Plus
3L 28110227 3L 20843419..20843586 1304..1471 840 100 Plus
3L 28110227 3L 20843926..20844024 1471..1569 495 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20835503..20836458 350..1305 4780 100 Plus
3L 28103327 3L 20835101..20835451 1..351 1755 100 Plus
3L 28103327 3L 20837218..20837442 1570..1794 1125 100 Plus
3L 28103327 3L 20836519..20836686 1304..1471 840 100 Plus
3L 28103327 3L 20837026..20837124 1471..1569 495 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:52:59 has no hits.

LD45673.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:14 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20831022..20831370 1..349 100 -> Plus
chr3L 20831424..20832379 350..1305 100 -> Plus
chr3L 20832442..20832607 1306..1471 100 -> Plus
chr3L 20832948..20833045 1472..1569 100 -> Plus
chr3L 20833139..20833361 1570..1792 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:04 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RA 1..825 51..875 100 == Plus
CG11456-RA 826..1338 928..1440 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:27 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RB 1..981 51..1031 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:15:12 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RB 1..981 51..1031 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:13 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RA 1..825 51..875 100 == Plus
CG11456-RA 826..1338 928..1440 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:43:14 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RB 1..981 51..1031 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:46:27 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RA 1..875 1..875 100 == Plus
CG11456-RA 876..1740 928..1792 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:27 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RB 1..1792 1..1792 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:15:12 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RB 15..1806 1..1792 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:13 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RA 1..875 1..875 100 == Plus
CG11456-RA 876..1740 928..1792 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:43:14 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
CG11456-RB 15..1806 1..1792 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:14 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20843927..20844024 1472..1569 100 -> Plus
3L 20844118..20844340 1570..1792 100   Plus
3L 20842001..20842349 1..349 100 -> Plus
3L 20842403..20843358 350..1305 100 -> Plus
3L 20843421..20843586 1306..1471 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:14 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20843927..20844024 1472..1569 100 -> Plus
3L 20844118..20844340 1570..1792 100   Plus
3L 20842001..20842349 1..349 100 -> Plus
3L 20842403..20843358 350..1305 100 -> Plus
3L 20843421..20843586 1306..1471 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:14 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20843927..20844024 1472..1569 100 -> Plus
3L 20844118..20844340 1570..1792 100   Plus
3L 20842001..20842349 1..349 100 -> Plus
3L 20842403..20843358 350..1305 100 -> Plus
3L 20843421..20843586 1306..1471 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:15:12 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20835101..20835449 1..349 100 -> Plus
arm_3L 20835503..20836458 350..1305 100 -> Plus
arm_3L 20836521..20836686 1306..1471 100 -> Plus
arm_3L 20837027..20837124 1472..1569 100 -> Plus
arm_3L 20837218..20837440 1570..1792 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:39 Download gff for LD45673.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20835101..20835449 1..349 100 -> Plus
3L 20835503..20836458 350..1305 100 -> Plus
3L 20836521..20836686 1306..1471 100 -> Plus
3L 20837027..20837124 1472..1569 100 -> Plus
3L 20837218..20837440 1570..1792 100   Plus

LD45673.hyp Sequence

Translation from 50 to 1030

> LD45673.hyp
MENSARIVYVCSLCLRQYDLQEDLRGHLVYFHGYEPISTPSVKNKTAKTS
TKEQTAAGSNSQDKQTVVERSENSEPPASELQPMPFKDFRLVLRANMLEP
CSFGKECPFKFQDATKMELHCSCHKGGSFSCCECGMELPNWRRCSAHLWK
AHQVDVDLLVCPVFECNYKSPISALVWRHMQVHKKWRPRVLRSLAAVQRR
RKLKEQSAEMAAQPAALPPSSKKNKYYAEKTCEICNRKFVNGKTLSKHVK
TVHNKIKPFICNVCGKKTARKASLIVSSDSTLRSSCYLILFPDSHASAHG
REAAAMWRMQVLHSRSQCPAQASAAS*

LD45673.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11456-PB 326 CG11456-PB 1..326 1..326 1748 100 Plus
CG11456-PC 445 CG11456-PC 1..276 1..276 1490 99.6 Plus
CG11456-PA 445 CG11456-PA 1..276 1..276 1490 99.6 Plus

LD45673.pep Sequence

Translation from 50 to 1030

> LD45673.pep
MENSARIVYVCSLCLRQYDLQEDLRGHLVYFHGYEPISTPSVKNKTAKTS
TKEQTAAGSNSQDKQTVVERSENSEPPASELQPMPFKDFRLVLRANMLEP
CSFGKECPFKFQDATKMELHCSCHKGGSFSCCECGMELPNWRRCSAHLWK
AHQVDVDLLVCPVFECNYKSPISALVWRHMQVHKKWRPRVLRSLAAVQRR
RKLKEQSAEMAAQPAALPPSSKKNKYYAEKTCEICNRKFVNGKTLSKHVK
TVHNKIKPFICNVCGKKTARKASLIVSSDSTLRSSCYLILFPDSHASAHG
REAAAMWRMQVLHSRSQCPAQASAAS*

LD45673.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24289-PA 442 GF24289-PA 1..272 1..276 1082 73.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16146-PA 445 GG16146-PA 1..276 1..276 1336 88.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15912-PA 329 GH15912-PA 1..280 1..276 850 58.4 Plus
Dgri\GH15459-PA 1113 GH15459-PA 800..975 107..274 170 29.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11456-PB 326 CG11456-PB 1..326 1..326 1748 100 Plus
CG11456-PC 445 CG11456-PC 1..276 1..276 1490 99.6 Plus
CG11456-PA 445 CG11456-PA 1..276 1..276 1490 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16566-PA 297 GI16566-PA 1..255 1..276 796 58.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24407-PA 442 GL24407-PA 1..272 1..276 1063 69.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11015-PA 442 GA11015-PA 1..272 1..276 1069 70.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22329-PA 447 GM22329-PA 1..278 1..276 1399 93.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14917-PA 426 GD14917-PA 1..257 1..276 1300 88 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12818-PA 325 GJ12818-PA 1..276 1..276 832 58.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25365-PA 452 GK25365-PA 1..277 1..276 984 67.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19716-PA 445 GE19716-PA 1..276 1..276 1318 90.6 Plus