Clone LD45683 Report

Search the DGRC for LD45683

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:456
Well:83
Vector:pOT2
Associated Gene/TranscriptCG32409-RA
Protein status:LD45683.pep: gold
Sequenced Size:1210

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32409 2003-01-01 Sim4 clustering to Release 3
CG32409 2004-10-02 Blastp of sequenced clone
CG32409 2008-04-29 Release 5.5 accounting
CG32409 2008-08-15 Release 5.9 accounting
CG32409 2008-12-18 5.12 accounting

Clone Sequence Records

LD45683.complete Sequence

1210 bp (1210 high quality bases) assembled on 2004-10-02

GenBank Submission: BT016084

> LD45683.complete
AATTTTGCTGTTTATACGCTAATTCCCTGAAAATGGATGTTGTTAAAGAA
GTTCTGGCCAAACACCAAAAGGAATTGGACAAATACAAGCCGATCACAGT
AGAAAAGCATTTGGAATGCCGACTCGACGTTGGCAGCCTGCTGATCACAG
ATCCCAACGATTTCGATGACCGGGAATTGAGGGACAACAAAGAGGAGTAC
CTGACCGCACTGACACGGGAGAACACCCAACTTTTGGTCAATGCCATTTG
GGAGTTGCCCACCGAACGGGTAGACGAGAGCATTGTGGCCAAGCTGCCGG
AACCCACGACGGTACTGCCCCGCCTCCGTAAGCCGCCAGGTCCACGTCCG
CTCACCAAATGGGAGAAGTTCGCCAAGGAGAAGGGTATCAGCAAGAAGAA
GAAGGACAAGAAGACCTACGATGAGACCATGGATAAATGGGTGCCTACAT
ATGGTTTTAAGCGTGCCGAGGCCGAGAAGGCCAAGGATTGGGTGCTGGAG
GTGCCACAGAACGCCGATCCCAATACGGACATGTTCCAGAAGAAGATCGA
CCTGCGCAACGAGAAGGTGGCCAAGAATGAGATCCAGCGGATGAAGAACA
TTGTGCGCGCCAAGAAGATCGACATGCCACGCAGCGGTTACTTGGGACCC
GAGGCTGCCTCATCCAGCCAGTTGTTAACGGCCGTCACTGTGGCCAAATC
CTCCACAGCCTCAGTCGGCAAATTCCAAAACAAACTGCCCAAGGAGAAGG
AGGCACGTGGTCTGGGCATTAAAGAGCTGATTCCCGGCGGCAAACGCAAG
CAGTCGCATATCACACAAACGCCGGAGAAGGAGGCCAACCTGGATCTCAT
CAAGAGCGTGCTGAACAAGAAGCCCAAACTGGACGTGAGCAAGGCGGTAT
CGATGGAGAAGCGCGACAATCGCTTGGCACGCGAAGCAGAGGCTGAGAAT
GAACCAGGCAAGAAGGGCGGCAAGAAGCCCAAGGGCAAGGGCAGTCGCAA
GGCGGTGGGCAAGAAGTCCAAGGGCAATCGTGGTCAAAGGGCTCCGGGCA
AGAAGGCGCAAGCCGGTCGCAAACGTCGCTAGGAAGAATTACACATGCCT
TAGGACACTTTAATTAACGAAAAACACTTTACACTTATGCTTAATAAATC
TTAGCCATAAGACAAAACATAAACTATGTTCGGTAAAAACGCAAAAAAAA
AAAAAAAAAA

LD45683.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32409-RA 1335 CG32409-RA 60..1254 1..1195 5975 100 Plus
CG32412-RA 1287 CG32412-RA 1096..1287 1195..1004 960 100 Minus
CG32412.a 1156 CG32412.a 1052..1156 1195..1091 525 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5892681..5893174 435..928 2470 100 Plus
chr3L 24539361 chr3L 5893239..5893502 929..1192 1320 100 Plus
chr3L 24539361 chr3L 5892369..5892623 180..434 1275 100 Plus
chr3L 24539361 chr3L 5892133..5892314 1..182 910 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5900115..5900608 435..928 2470 100 Plus
3L 28110227 3L 5900673..5900939 929..1195 1335 100 Plus
3L 28110227 3L 5899803..5900057 180..434 1275 100 Plus
3L 28110227 3L 5899567..5899748 1..182 910 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5893215..5893708 435..928 2470 100 Plus
3L 28103327 3L 5893773..5894039 929..1195 1335 100 Plus
3L 28103327 3L 5892903..5893157 180..434 1275 100 Plus
3L 28103327 3L 5892667..5892848 1..182 910 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:53:05 has no hits.

LD45683.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:17 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5892133..5892313 1..181 100 -> Plus
chr3L 5892371..5892623 182..434 100 -> Plus
chr3L 5892681..5893174 435..928 100 -> Plus
chr3L 5893239..5893502 929..1192 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:07 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 1..1050 33..1082 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:36 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 1..1050 33..1082 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:15:18 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 1..1050 33..1082 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:27 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 1..1050 33..1082 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:43:20 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 1..1050 33..1082 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:36:27 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 26..1217 1..1192 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:36 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 26..1217 1..1192 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:15:18 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 40..1231 1..1192 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:27 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 26..1217 1..1192 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:43:20 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
CG32409-RA 40..1231 1..1192 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:17 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5899567..5899747 1..181 100 -> Plus
3L 5899805..5900057 182..434 100 -> Plus
3L 5900115..5900608 435..928 100 -> Plus
3L 5900673..5900936 929..1192 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:17 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5899567..5899747 1..181 100 -> Plus
3L 5899805..5900057 182..434 100 -> Plus
3L 5900115..5900608 435..928 100 -> Plus
3L 5900673..5900936 929..1192 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:17 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5899567..5899747 1..181 100 -> Plus
3L 5899805..5900057 182..434 100 -> Plus
3L 5900115..5900608 435..928 100 -> Plus
3L 5900673..5900936 929..1192 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:15:18 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5892667..5892847 1..181 100 -> Plus
arm_3L 5892905..5893157 182..434 100 -> Plus
arm_3L 5893215..5893708 435..928 100 -> Plus
arm_3L 5893773..5894036 929..1192 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:52:21 Download gff for LD45683.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5892905..5893157 182..434 100 -> Plus
3L 5893215..5893708 435..928 100 -> Plus
3L 5893773..5894036 929..1192 100   Plus
3L 5892667..5892847 1..181 100 -> Plus

LD45683.hyp Sequence

Translation from 2 to 1081

> LD45683.hyp
FCCLYANSLKMDVVKEVLAKHQKELDKYKPITVEKHLECRLDVGSLLITD
PNDFDDRELRDNKEEYLTALTRENTQLLVNAIWELPTERVDESIVAKLPE
PTTVLPRLRKPPGPRPLTKWEKFAKEKGISKKKKDKKTYDETMDKWVPTY
GFKRAEAEKAKDWVLEVPQNADPNTDMFQKKIDLRNEKVAKNEIQRMKNI
VRAKKIDMPRSGYLGPEAASSSQLLTAVTVAKSSTASVGKFQNKLPKEKE
ARGLGIKELIPGGKRKQSHITQTPEKEANLDLIKSVLNKKPKLDVSKAVS
MEKRDNRLAREAEAENEPGKKGGKKPKGKGSRKAVGKKSKGNRGQRAPGK
KAQAGRKRR*

LD45683.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32409-PA 349 CG32409-PA 1..349 11..359 1792 100 Plus

LD45683.pep Sequence

Translation from 2 to 1081

> LD45683.pep
FCCLYANSLKMDVVKEVLAKHQKELDKYKPITVEKHLECRLDVGSLLITD
PNDFDDRELRDNKEEYLTALTRENTQLLVNAIWELPTERVDESIVAKLPE
PTTVLPRLRKPPGPRPLTKWEKFAKEKGISKKKKDKKTYDETMDKWVPTY
GFKRAEAEKAKDWVLEVPQNADPNTDMFQKKIDLRNEKVAKNEIQRMKNI
VRAKKIDMPRSGYLGPEAASSSQLLTAVTVAKSSTASVGKFQNKLPKEKE
ARGLGIKELIPGGKRKQSHITQTPEKEANLDLIKSVLNKKPKLDVSKAVS
MEKRDNRLAREAEAENEPGKKGGKKPKGKGSRKAVGKKSKGNRGQRAPGK
KAQAGRKRR*

LD45683.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24001-PA 317 GF24001-PA 105..317 145..359 950 91.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15298-PA 349 GG15298-PA 1..349 11..359 1793 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14686-PA 344 GH14686-PA 1..344 11..359 1452 84.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32409-PA 349 CG32409-PA 1..349 11..359 1792 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13300-PA 347 GI13300-PA 1..347 11..359 1467 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16881-PA 344 GA16881-PA 1..344 11..359 1593 88.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14731-PA 349 GM14731-PA 1..349 11..359 1797 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13910-PA 349 GD13910-PA 1..349 11..359 1789 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12069-PA 347 GJ12069-PA 1..347 11..359 1461 87.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16661-PA 349 GK16661-PA 1..349 11..359 1498 88 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21520-PA 349 GE21520-PA 1..349 11..359 1790 99.1 Plus