Clone LD45742 Report

Search the DGRC for LD45742

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:457
Well:42
Vector:pOT2
Associated Gene/Transcriptbocksbeutel-RA
Protein status:LD45742.pep: gold
Preliminary Size:1654
Sequenced Size:1498

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9424 2001-01-01 Release 2 assignment
CG9424 2001-11-30 Blastp of sequenced clone
CG9424 2003-01-01 Sim4 clustering to Release 3
bocksbeutel 2008-04-29 Release 5.5 accounting
bocksbeutel 2008-08-15 Release 5.9 accounting
bocksbeutel 2008-12-18 5.12 accounting

Clone Sequence Records

LD45742.complete Sequence

1498 bp (1498 high quality bases) assembled on 2001-11-30

GenBank Submission: AY069685

> LD45742.complete
TGACGACATTGCTATTTTTGTGTGTTTTGAGTTTCACCACGGCGGAAAAT
AATGTCGGACCTTTCTTACCTGGACACGTTGGGCAACAAGGAGCTGCTGG
CCAAGTGCCTGGAGCACGGCCTGCCCGGTGTTCCCGTGACGGACAGCACC
CGCAGCGTCATAATTCGCCGACTAAAGGCCAAAATCACCGGGGTTCCGCT
GAACAAAAGCAAATCTGCAAGTAAGAAAGCGATTCCGAGGCGTGAGACCG
TACACGGCAGCCAGGTAACGACGCCCACATCGGAGCCAGTGCGTCGTACG
CCCGGCAAGAGTGCAGGACGCACTAGCAGCAACAACAACAAGATCAGCGA
ACAAAGTCGTCGCACAATCGCCTATGGACTAGACAACACCTCGATCTCGG
GAAGATCTGTGCAGACTACTACCACGGTGTCGGATATGAGCTCCCAGTCG
GAGGACGACGACTCCTACATGGTGGACTCTCCGGTGCCTAATTACTCCAA
GGACCAGCAGCCTAGACGTTATGTTTCTCTAGCCAAATCCGGAGTTTTGA
CCACATCTTACACACGCGAAGTTGACCAGCCGCTGTACGAACAGGAGGAT
ATACCACGCAGCTACACCTACGAAAGACCCCATGTGCCAGCCGCCACTCT
TCACGCACTTCCCACATACGAGCCACGCATCGAACCTTCGACATACAGAC
CCACAGATTTGGGTTTTTCGCGTCCCCTGCTGACTCAAACCAACTTAAAC
TCAACCAGCTACGAGGAGTCATCTACGTACAATCCAAAACTTTCACCCAT
TTCGCCAAGAAACACTTTCAGCGGATCCGCTAGGCCTTTTGGTGGCCCAG
CACCAGCTCCAGCACCCATTCGCCAGCGACAGAGTGTTCCAGTTAGTGGA
TCCAATCTGGCCCGTGGTCGCCTGCTCCAGCCGACCACCGCAGTAAACAC
TCTATATCCACAACTAAATGAATTCTACGATCAGCCGAATGACGCAGGCG
AACCCATGGAGACGGAGAGCGAGTCCGAAGTCGAGGAAGTACCCATCAAT
AGCCATTTCCAAAAGAATCGCTTCTCGCCGCTGGCTAGAAAACCTCTGTG
TCAGTGATGCTGGCCACCATGGTGTACGTGGTATTGACACCCAACGCCTG
AGAAGCGTTCATATCGCGGAATACATTTGGTTTTGGTTACTCCACGCATT
TCAACCACAGACTACAGCGAAGGAATATTTATGACGACTTTGCACCTTAA
GACTACTACTTCAATTCCAAACATGTTCAAAACTAACAAATATTCAACTC
AATTTGCCAAGTCTTTAATTGCTTGTTCTCGCATATTGTTTCTTTTTATA
CATAATTAGAAAAATGTACTACATTATAATTATTGTATTGTATTAAATAA
ACTAATTAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD45742.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
bocksbeutel-RA 1638 bocksbeutel-RA 226..1638 1..1413 7065 100 Plus
bocksbeutel.a 1638 bocksbeutel.a 226..1638 1..1413 7065 100 Plus
bocksbeutel-RB 1520 bocksbeutel-RB 8..1105 1..1098 5490 100 Plus
bocksbeutel-RB 1520 bocksbeutel-RB 1205..1520 1098..1413 1580 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5415707..5416804 1098..1 5475 99.9 Minus
chr3R 27901430 chr3R 5415292..5415607 1413..1098 1580 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9589883..9590980 1098..1 5490 100 Minus
3R 32079331 3R 9589466..9589783 1415..1098 1590 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9330714..9331811 1098..1 5490 100 Minus
3R 31820162 3R 9330297..9330614 1415..1098 1590 100 Minus
Blast to na_te.dros performed 2019-03-16 20:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1974..2032 1351..1413 153 74.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2681..2834 195..350 116 60.5 Plus
roo 9092 roo DM_ROO 9092bp 1129..1166 313..351 111 79.5 Plus

LD45742.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:44:04 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5415292..5415606 1099..1413 100 <- Minus
chr3R 5415707..5416804 1..1098 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:11 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 1..1056 52..1107 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:36 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 1..1056 52..1107 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:19 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 1..1056 52..1107 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:46 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 1..1056 52..1107 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:52:21 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 1..1056 52..1107 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:03 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 8..1418 1..1411 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:36 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 8..1420 1..1413 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:19 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 23..1435 1..1413 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:46 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 8..1418 1..1411 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:21 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 23..1435 1..1413 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:04 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9589468..9589782 1099..1413 100 <- Minus
3R 9589883..9590980 1..1098 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:04 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9589468..9589782 1099..1413 100 <- Minus
3R 9589883..9590980 1..1098 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:04 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9589468..9589782 1099..1413 100 <- Minus
3R 9589883..9590980 1..1098 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:19 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5415190..5415504 1099..1413 100 <- Minus
arm_3R 5415605..5416702 1..1098 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:09 Download gff for LD45742.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9330299..9330613 1099..1413 100 <- Minus
3R 9330714..9331811 1..1098 100   Minus

LD45742.pep Sequence

Translation from 51 to 1106

> LD45742.pep
MSDLSYLDTLGNKELLAKCLEHGLPGVPVTDSTRSVIIRRLKAKITGVPL
NKSKSASKKAIPRRETVHGSQVTTPTSEPVRRTPGKSAGRTSSNNNKISE
QSRRTIAYGLDNTSISGRSVQTTTTVSDMSSQSEDDDSYMVDSPVPNYSK
DQQPRRYVSLAKSGVLTTSYTREVDQPLYEQEDIPRSYTYERPHVPAATL
HALPTYEPRIEPSTYRPTDLGFSRPLLTQTNLNSTSYEESSTYNPKLSPI
SPRNTFSGSARPFGGPAPAPAPIRQRQSVPVSGSNLARGRLLQPTTAVNT
LYPQLNEFYDQPNDAGEPMETESESEVEEVPINSHFQKNRFSPLARKPLC
Q*

LD45742.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16530-PA 403 GF16530-PA 1..321 1..315 1107 71.1 Plus
Dana\GF12772-PA 481 GF12772-PA 1..68 1..67 157 48.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17352-PA 399 GG17352-PA 1..351 1..351 1465 86 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19297-PA 434 GH19297-PA 1..347 1..335 659 49.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
bocks-PA 351 CG9424-PA 1..351 1..351 1811 100 Plus
bocks-PB 399 CG9424-PB 1..349 1..349 1797 100 Plus
Ote-PA 424 CG5581-PA 1..283 1..249 173 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23513-PA 425 GI23513-PA 1..369 1..346 593 47.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22173-PA 399 GL22173-PA 1..347 1..349 847 56.5 Plus
Dper\GL16712-PA 211 GL16712-PA 1..110 1..118 144 34.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21776-PA 398 GA21776-PA 1..346 1..349 847 56.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26238-PA 399 GM26238-PA 1..351 1..351 1636 92 Plus
Dsec\GM19914-PA 424 GM19914-PA 1..64 1..67 156 49.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20779-PA 373 GD20779-PA 1..325 1..351 1359 81.3 Plus
Dsim\GD25400-PA 424 GD25400-PA 1..64 1..67 156 49.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10265-PA 419 GJ10265-PA 1..363 1..346 770 53.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12790-PA 408 GK12790-PA 5..361 7..351 635 44.6 Plus
Dwil\GK12789-PA 479 GK12789-PA 1..89 4..94 195 47.5 Plus
Dwil\GK23240-PA 404 GK23240-PA 1..88 1..83 159 43.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24758-PA 399 GE24758-PA 1..351 1..351 1590 89.5 Plus
Dyak\GE13920-PA 416 GE13920-PA 1..98 1..106 162 40.9 Plus

LD45742.hyp Sequence

Translation from 51 to 1106

> LD45742.hyp
MSDLSYLDTLGNKELLAKCLEHGLPGVPVTDSTRSVIIRRLKAKITGVPL
NKSKSASKKAIPRRETVHGSQVTTPTSEPVRRTPGKSAGRTSSNNNKISE
QSRRTIAYGLDNTSISGRSVQTTTTVSDMSSQSEDDDSYMVDSPVPNYSK
DQQPRRYVSLAKSGVLTTSYTREVDQPLYEQEDIPRSYTYERPHVPAATL
HALPTYEPRIEPSTYRPTDLGFSRPLLTQTNLNSTSYEESSTYNPKLSPI
SPRNTFSGSARPFGGPAPAPAPIRQRQSVPVSGSNLARGRLLQPTTAVNT
LYPQLNEFYDQPNDAGEPMETESESEVEEVPINSHFQKNRFSPLARKPLC
Q*

LD45742.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
bocksbeutel-PA 351 CG9424-PA 1..351 1..351 1811 100 Plus
bocksbeutel-PB 399 CG9424-PB 1..349 1..349 1797 100 Plus
Ote-PA 424 CG5581-PA 1..283 1..249 173 25.1 Plus