Clone LD45754 Report

Search the DGRC for LD45754

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:457
Well:54
Vector:pOT2
Associated Gene/TranscriptNsun2-RA
Protein status:LD45754.pep: gold
Preliminary Size:2359
Sequenced Size:2451

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6133 2001-01-01 Release 2 assignment
CG6133 2001-10-10 Blastp of sequenced clone
CG6133 2003-01-01 Sim4 clustering to Release 3
CG6133 2008-04-29 Release 5.5 accounting
CG6133 2008-08-15 Release 5.9 accounting
CG6133 2008-12-18 5.12 accounting

Clone Sequence Records

LD45754.complete Sequence

2451 bp (2451 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061496

> LD45754.complete
AACACGTTTTAACTATTCGTTTCGTTTAGAAAACACACAACGCTTGCCTA
ATTTTTTTTAAACATATTCAGTGGACTGATAACTTGGTATTGATATTGAC
AAATGGGTCGAAACCAGAAGCAAAATTTTTTCGCGGCTCGCAAACGTCAA
AAGCGGGAGAATGGTCCCAAGCGCACCGATCGTCAGGCCCAGCCGTATGA
GGAGATCAAAAGGGATAATGCCTTCTTCATCAAGTACTACCAACTGCAGA
AGATCTGCGCCACCGATGAGGAGTGGACGCAGTTCCTTGCTTCCATCAGG
GACAATCTGCCCACTACTTTCCGTGTGACAGGATTCAAGGACGAGGCCAA
AGCCCTGCTATCCATTATTGAGACGCAGCTATTCACCGAGTATGTGAGGG
CGGTGGCCGAGCTGCACCAGAAGGCGCCCGAGGATGTGGAACGTCCGCTG
TGCCTGCCGTGGTATCCAAACGGACTGGCCTACCAGCTGCACCTTACCCG
CAAGGACATTCGACGCTCGGAGCCGCTCTACCGGCTGCACAACTTCCTAA
TTGTGGAGACCACGGCGGGCGGCATCAGCAGGCAGGAGGCCGTATCCATG
ATCCCGCCAATTGTCCTGGATGTCCGACCCACGGACAAAGTTTTGGACAT
GTGTGCTGCGCCAGGTTCGAAGACAGCCCAGCTCATTGAGGCTCTGCACG
CTGCTCCCGAGGAGCACAAGATTCCGCCCGGCTTTGTGCTGGCCAACGAT
GTAGACAACAATCGGTGCTACATGCTGGTTCACCAAGCCAAGCGTCTAAA
CTCGCCCTGCCTGTTGGTGACCAACCACGACAGCAGTGTCTTTCCCAATC
TCGTGACCACGAAGCCGGACGGCTCAAAGGCGATCCTTAAGTTCGATAAG
ATCTTGTGCGATGTACCTTGCTCCGGCGACGGCACACTGCGCAAGAATCC
AGACATTTGGCTGAAGTGGAACCTGGCACAGGCCTACAACCTCCACGGCA
TTCAATACCGCATCGTACGTCGTGGCGCTGAGATGCTGGAGGTTGGCGGA
AGGCTGGTGTACTCCACCTGCTCACTGAATCCCATCGAGAACGAGGCGGT
GCTGCAGCGGATCATAAAGGATGCCGACGGTGCATTGGAGCTGGTGGATG
CGGGGCACTTGGTGCCAGGTCTTAAGTACAAGCCCGGCATGACCGACTGG
AAGCTGGCCACCAAGGAGGTGGACCAGATCTTTACCCGCTTTGAGGAAGT
GCCTGAAAGCCTGCACACTATAATACGGCCCGGTATGTTCCCTCTGCCGG
CCGACGAGATGGCCAAGATCGGGTTGGAGAAGTGCCTCCGCGTATTGCCG
CATCTCCAGGACAGCGGCGGCTTCTTTGTAGCCGTGTTGGAGAAGCGTCG
TCAGCTAAGCTTCGAAAAGAACGATGTGGTGGAGCTGGTAAAGCTGAACG
AGACGGCCAAGCAGCCTGCAGCTGAGCCGCAAGTGGACGCGGATGGCAAG
CCCATCGAGGAGAAGTCCGTTCCGTGGGGACCGCAGCGAAAGAAGCGACG
TCTGCATGGCTACAAGGAAGATCCTTATGTCTTCTTCGGCGAGAATGATC
CTGACTACCAGGCGATCAAGGAGTTCTACCAGCTGGACGAATCCCTTAGT
CAACGATGTCTCTTAACTCGCTGTGTCACGGAGAAAAAGAAGAACATCTA
TTACTGCTCTGAACCCATCCGCGATTTGGTGCTTAACAACGAAAACAACA
TTAAGATCATCAACACGGGCGTTAAGACATTCGTGCGCTGCGAGAACCGG
CATACGGTGCATCCCTTCCGATTGGCCCAGGAGGGCCTCCAGACCTCCAA
TGCCTTCATGGGCGCCAGCAGGAGAATCCAGGTGGAGCGGGAGGACCTGG
TAATGATGCTCAATTGCACTGATCCCACGCAGCCGCCGTCGACTCACGAA
CTGAAGAAGGAAACCCAGGAGCGCTGCAAGGAATTGGGGGTGGGCAGCTG
CATACTTAAGTACGTGGACCAGCGGTTTACGTTGTACACGGTGGGCTGGC
GCGGCACCTCCAGTCTGCGCGCCTATGTCCAAAAGGACGAGACCATCCAC
ATTCTCCGACTGCTGGGCGCTGATCTCAGCAAGTTTGAGACCAATAAGTA
CGAGGACGCGAGAGTGGCGGCTGCTGCTGCAGCGGACGCTGAAGTCGGCA
AGAGTGCCGAGGCCGAAGCCGATTCCTCCGGCGATGGTGACGCCACGGAG
TCCACATTCTCTGGCAGTGGCGCTATTGATGTCACAGTGGCCGCCGAGAC
AACAGGCACACCAATGGACACCGAAGTGGTGGCCACCAGTTAGTGTTTGT
CGGGAGTAGCTATGAAATCTAGCATTTAAGCAAAGACGATAGAATAAATA
AAAAAAAATCGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

LD45754.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6133-RA 2586 CG6133-RA 29..2449 1..2421 12105 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4004867..4006692 1988..163 8980 99.5 Minus
chrX 22417052 chrX 4004390..4004810 2407..1987 2060 99.3 Minus
chrX 22417052 chrX 4006769..4006931 163..1 815 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:41:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4111642..4113467 1988..163 9130 100 Minus
X 23542271 X 4111151..4111585 2421..1987 2175 100 Minus
X 23542271 X 4113544..4113706 163..1 815 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4119740..4121565 1988..163 9130 100 Minus
X 23527363 X 4119249..4119683 2421..1987 2175 100 Minus
X 23527363 X 4121642..4121804 163..1 815 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:53:10 has no hits.

LD45754.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:54:20 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4004395..4004809 1988..2402 99 <- Minus
chrX 4004868..4006692 163..1987 99 <- Minus
chrX 4006770..4006931 1..162 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:12 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
CG6133-RA 1..2241 103..2343 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:24 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
CG6133-RA 1..2241 103..2343 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:15:23 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
Nsun2-RA 1..2241 103..2343 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:11 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
CG6133-RA 1..2241 103..2343 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:43:27 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
Nsun2-RA 1..2241 103..2343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:41 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
CG6133-RA 29..2444 1..2416 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:24 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
CG6133-RA 29..2444 1..2416 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:15:23 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
Nsun2-RA 29..2444 1..2416 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:11 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
CG6133-RA 29..2444 1..2416 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:43:27 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
Nsun2-RA 29..2444 1..2416 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:20 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
X 4111156..4111584 1988..2416 100 <- Minus
X 4111643..4113467 163..1987 100 <- Minus
X 4113545..4113706 1..162 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:20 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
X 4111156..4111584 1988..2416 100 <- Minus
X 4111643..4113467 163..1987 100 <- Minus
X 4113545..4113706 1..162 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:20 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
X 4111156..4111584 1988..2416 100 <- Minus
X 4111643..4113467 163..1987 100 <- Minus
X 4113545..4113706 1..162 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:15:23 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4005189..4005617 1988..2416 100 <- Minus
arm_X 4005676..4007500 163..1987 100 <- Minus
arm_X 4007578..4007739 1..162 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:24 Download gff for LD45754.complete
Subject Subject Range Query Range Percent Splice Strand
X 4119254..4119682 1988..2416 100 <- Minus
X 4119741..4121565 163..1987 100 <- Minus
X 4121643..4121804 1..162 100   Minus

LD45754.pep Sequence

Translation from 102 to 2342

> LD45754.pep
MGRNQKQNFFAARKRQKRENGPKRTDRQAQPYEEIKRDNAFFIKYYQLQK
ICATDEEWTQFLASIRDNLPTTFRVTGFKDEAKALLSIIETQLFTEYVRA
VAELHQKAPEDVERPLCLPWYPNGLAYQLHLTRKDIRRSEPLYRLHNFLI
VETTAGGISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHA
APEEHKIPPGFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNL
VTTKPDGSKAILKFDKILCDVPCSGDGTLRKNPDIWLKWNLAQAYNLHGI
QYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDA
GHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPA
DEMAKIGLEKCLRVLPHLQDSGGFFVAVLEKRRQLSFEKNDVVELVKLNE
TAKQPAAEPQVDADGKPIEEKSVPWGPQRKKRRLHGYKEDPYVFFGENDP
DYQAIKEFYQLDESLSQRCLLTRCVTEKKKNIYYCSEPIRDLVLNNENNI
KIINTGVKTFVRCENRHTVHPFRLAQEGLQTSNAFMGASRRIQVEREDLV
MMLNCTDPTQPPSTHELKKETQERCKELGVGSCILKYVDQRFTLYTVGWR
GTSSLRAYVQKDETIHILRLLGADLSKFETNKYEDARVAAAAAADAEVGK
SAEAEADSSGDGDATESTFSGSGAIDVTVAAETTGTPMDTEVVATS*

LD45754.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21493-PA 737 GF21493-PA 1..684 1..683 3397 90.8 Plus
Dana\GF12515-PA 896 GF12515-PA 422..648 152..431 222 25.4 Plus
Dana\GF15166-PA 506 GF15166-PA 282..448 165..341 193 29.3 Plus
Dana\GF11004-PA 441 GF11004-PA 222..389 171..350 169 32.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\EG:EG0007.9-PA 738 GG18560-PA 1..736 1..745 3609 93.3 Plus
Dere\GG20307-PA 897 GG20307-PA 418..644 152..431 220 25.4 Plus
Dere\GG24769-PA 503 GG24769-PA 276..443 162..339 195 29.1 Plus
Dere\GG16283-PA 439 GG16283-PA 221..393 171..350 163 30.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24818-PA 729 GH24818-PA 1..679 1..687 3089 82.1 Plus
Dgri\GH21314-PA 843 GH21314-PA 422..648 152..431 234 28 Plus
Dgri\GH11175-PA 510 GH11175-PA 283..455 162..340 202 29.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Nsun2-PA 746 CG6133-PA 1..746 1..746 3903 100 Plus
CG8545-PA 891 CG8545-PA 411..688 152..479 217 24.8 Plus
l(2)10685-PA 503 CG4749-PA 276..443 162..339 196 29.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16150-PA 725 GI16150-PA 1..691 1..687 3146 82.9 Plus
Dmoj\GI19747-PA 839 GI19747-PA 401..627 152..431 244 28 Plus
Dmoj\GI17979-PA 512 GI17979-PA 285..452 162..339 196 28 Plus
Dmoj\GI13435-PA 443 GI13435-PA 200..443 154..436 180 27.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21386-PA 730 GL21386-PA 1..682 1..684 3251 85.7 Plus
Dper\GL10113-PA 934 GL10113-PA 427..644 161..431 221 25.8 Plus
Dper\GL15584-PA 504 GL15584-PA 277..444 162..339 184 29.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19379-PA 729 GA19379-PA 1..682 1..684 3250 85.7 Plus
Dpse\GA21153-PA 934 GA21153-PA 427..644 161..431 222 25.8 Plus
Dpse\GA18402-PA 504 GA18402-PA 277..444 162..339 187 29.7 Plus
Dpse\GA10764-PA 438 GA10764-PA 224..419 171..380 167 30.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12703-PA 744 GM12703-PA 1..742 1..745 3729 94.8 Plus
Dsec\GM21395-PA 865 GM21395-PA 404..587 152..351 219 27.9 Plus
Dsec\GM16796-PA 503 GM16796-PA 276..443 162..339 200 30.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\EG:EG0007.9-PA 747 GD16312-PA 1..745 1..745 3802 96.2 Plus
Dsim\GD15057-PA 440 GD15057-PA 222..379 171..334 165 30.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16427-PA 725 GJ16427-PA 1..686 1..683 3142 83.9 Plus
Dvir\GJ18081-PA 840 GJ18081-PA 406..680 152..479 234 27 Plus
Dvir\GJ19531-PA 510 GJ19531-PA 283..450 162..339 196 28 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17644-PA 742 GK17644-PA 1..741 1..741 3230 81.7 Plus
Dwil\GK17973-PA 866 GK17973-PA 394..577 152..351 223 28.4 Plus
Dwil\GK20395-PA 457 GK20395-PA 191..426 122..383 190 29.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\EG:EG0007.9-PA 746 GE16872-PA 1..744 1..745 3648 94 Plus
Dyak\GE12467-PA 902 GE12467-PA 421..647 152..431 221 26.1 Plus
Dyak\GE17352-PA 504 GE17352-PA 277..444 162..339 194 29.1 Plus
Dyak\GE22645-PA 440 GE22645-PA 222..394 171..350 171 31.4 Plus

LD45754.hyp Sequence

Translation from 102 to 2342

> LD45754.hyp
MGRNQKQNFFAARKRQKRENGPKRTDRQAQPYEEIKRDNAFFIKYYQLQK
ICATDEEWTQFLASIRDNLPTTFRVTGFKDEAKALLSIIETQLFTEYVRA
VAELHQKAPEDVERPLCLPWYPNGLAYQLHLTRKDIRRSEPLYRLHNFLI
VETTAGGISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHA
APEEHKIPPGFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNL
VTTKPDGSKAILKFDKILCDVPCSGDGTLRKNPDIWLKWNLAQAYNLHGI
QYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDA
GHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPA
DEMAKIGLEKCLRVLPHLQDSGGFFVAVLEKRRQLSFEKNDVVELVKLNE
TAKQPAAEPQVDADGKPIEEKSVPWGPQRKKRRLHGYKEDPYVFFGENDP
DYQAIKEFYQLDESLSQRCLLTRCVTEKKKNIYYCSEPIRDLVLNNENNI
KIINTGVKTFVRCENRHTVHPFRLAQEGLQTSNAFMGASRRIQVEREDLV
MMLNCTDPTQPPSTHELKKETQERCKELGVGSCILKYVDQRFTLYTVGWR
GTSSLRAYVQKDETIHILRLLGADLSKFETNKYEDARVAAAAAADAEVGK
SAEAEADSSGDGDATESTFSGSGAIDVTVAAETTGTPMDTEVVATS*

LD45754.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Nsun2-PA 746 CG6133-PA 1..746 1..746 3903 100 Plus
CG8545-PA 891 CG8545-PA 411..688 152..479 217 24.8 Plus
CG4749-PA 503 CG4749-PA 276..443 162..339 196 29.7 Plus