BDGP Sequence Production Resources |
Search the DGRC for LD45754
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 457 |
Well: | 54 |
Vector: | pOT2 |
Associated Gene/Transcript | Nsun2-RA |
Protein status: | LD45754.pep: gold |
Preliminary Size: | 2359 |
Sequenced Size: | 2451 |
Gene | Date | Evidence |
---|---|---|
CG6133 | 2001-01-01 | Release 2 assignment |
CG6133 | 2001-10-10 | Blastp of sequenced clone |
CG6133 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6133 | 2008-04-29 | Release 5.5 accounting |
CG6133 | 2008-08-15 | Release 5.9 accounting |
CG6133 | 2008-12-18 | 5.12 accounting |
2451 bp (2451 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061496
> LD45754.complete AACACGTTTTAACTATTCGTTTCGTTTAGAAAACACACAACGCTTGCCTA ATTTTTTTTAAACATATTCAGTGGACTGATAACTTGGTATTGATATTGAC AAATGGGTCGAAACCAGAAGCAAAATTTTTTCGCGGCTCGCAAACGTCAA AAGCGGGAGAATGGTCCCAAGCGCACCGATCGTCAGGCCCAGCCGTATGA GGAGATCAAAAGGGATAATGCCTTCTTCATCAAGTACTACCAACTGCAGA AGATCTGCGCCACCGATGAGGAGTGGACGCAGTTCCTTGCTTCCATCAGG GACAATCTGCCCACTACTTTCCGTGTGACAGGATTCAAGGACGAGGCCAA AGCCCTGCTATCCATTATTGAGACGCAGCTATTCACCGAGTATGTGAGGG CGGTGGCCGAGCTGCACCAGAAGGCGCCCGAGGATGTGGAACGTCCGCTG TGCCTGCCGTGGTATCCAAACGGACTGGCCTACCAGCTGCACCTTACCCG CAAGGACATTCGACGCTCGGAGCCGCTCTACCGGCTGCACAACTTCCTAA TTGTGGAGACCACGGCGGGCGGCATCAGCAGGCAGGAGGCCGTATCCATG ATCCCGCCAATTGTCCTGGATGTCCGACCCACGGACAAAGTTTTGGACAT GTGTGCTGCGCCAGGTTCGAAGACAGCCCAGCTCATTGAGGCTCTGCACG CTGCTCCCGAGGAGCACAAGATTCCGCCCGGCTTTGTGCTGGCCAACGAT GTAGACAACAATCGGTGCTACATGCTGGTTCACCAAGCCAAGCGTCTAAA CTCGCCCTGCCTGTTGGTGACCAACCACGACAGCAGTGTCTTTCCCAATC TCGTGACCACGAAGCCGGACGGCTCAAAGGCGATCCTTAAGTTCGATAAG ATCTTGTGCGATGTACCTTGCTCCGGCGACGGCACACTGCGCAAGAATCC AGACATTTGGCTGAAGTGGAACCTGGCACAGGCCTACAACCTCCACGGCA TTCAATACCGCATCGTACGTCGTGGCGCTGAGATGCTGGAGGTTGGCGGA AGGCTGGTGTACTCCACCTGCTCACTGAATCCCATCGAGAACGAGGCGGT GCTGCAGCGGATCATAAAGGATGCCGACGGTGCATTGGAGCTGGTGGATG CGGGGCACTTGGTGCCAGGTCTTAAGTACAAGCCCGGCATGACCGACTGG AAGCTGGCCACCAAGGAGGTGGACCAGATCTTTACCCGCTTTGAGGAAGT GCCTGAAAGCCTGCACACTATAATACGGCCCGGTATGTTCCCTCTGCCGG CCGACGAGATGGCCAAGATCGGGTTGGAGAAGTGCCTCCGCGTATTGCCG CATCTCCAGGACAGCGGCGGCTTCTTTGTAGCCGTGTTGGAGAAGCGTCG TCAGCTAAGCTTCGAAAAGAACGATGTGGTGGAGCTGGTAAAGCTGAACG AGACGGCCAAGCAGCCTGCAGCTGAGCCGCAAGTGGACGCGGATGGCAAG CCCATCGAGGAGAAGTCCGTTCCGTGGGGACCGCAGCGAAAGAAGCGACG TCTGCATGGCTACAAGGAAGATCCTTATGTCTTCTTCGGCGAGAATGATC CTGACTACCAGGCGATCAAGGAGTTCTACCAGCTGGACGAATCCCTTAGT CAACGATGTCTCTTAACTCGCTGTGTCACGGAGAAAAAGAAGAACATCTA TTACTGCTCTGAACCCATCCGCGATTTGGTGCTTAACAACGAAAACAACA TTAAGATCATCAACACGGGCGTTAAGACATTCGTGCGCTGCGAGAACCGG CATACGGTGCATCCCTTCCGATTGGCCCAGGAGGGCCTCCAGACCTCCAA TGCCTTCATGGGCGCCAGCAGGAGAATCCAGGTGGAGCGGGAGGACCTGG TAATGATGCTCAATTGCACTGATCCCACGCAGCCGCCGTCGACTCACGAA CTGAAGAAGGAAACCCAGGAGCGCTGCAAGGAATTGGGGGTGGGCAGCTG CATACTTAAGTACGTGGACCAGCGGTTTACGTTGTACACGGTGGGCTGGC GCGGCACCTCCAGTCTGCGCGCCTATGTCCAAAAGGACGAGACCATCCAC ATTCTCCGACTGCTGGGCGCTGATCTCAGCAAGTTTGAGACCAATAAGTA CGAGGACGCGAGAGTGGCGGCTGCTGCTGCAGCGGACGCTGAAGTCGGCA AGAGTGCCGAGGCCGAAGCCGATTCCTCCGGCGATGGTGACGCCACGGAG TCCACATTCTCTGGCAGTGGCGCTATTGATGTCACAGTGGCCGCCGAGAC AACAGGCACACCAATGGACACCGAAGTGGTGGCCACCAGTTAGTGTTTGT CGGGAGTAGCTATGAAATCTAGCATTTAAGCAAAGACGATAGAATAAATA AAAAAAAATCGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6133-RA | 2586 | CG6133-RA | 29..2449 | 1..2421 | 12105 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 4004867..4006692 | 1988..163 | 8980 | 99.5 | Minus |
chrX | 22417052 | chrX | 4004390..4004810 | 2407..1987 | 2060 | 99.3 | Minus |
chrX | 22417052 | chrX | 4006769..4006931 | 163..1 | 815 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 4004395..4004809 | 1988..2402 | 99 | <- | Minus |
chrX | 4004868..4006692 | 163..1987 | 99 | <- | Minus |
chrX | 4006770..4006931 | 1..162 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6133-RA | 1..2241 | 103..2343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6133-RA | 1..2241 | 103..2343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nsun2-RA | 1..2241 | 103..2343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6133-RA | 1..2241 | 103..2343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nsun2-RA | 1..2241 | 103..2343 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6133-RA | 29..2444 | 1..2416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6133-RA | 29..2444 | 1..2416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nsun2-RA | 29..2444 | 1..2416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6133-RA | 29..2444 | 1..2416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nsun2-RA | 29..2444 | 1..2416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4111156..4111584 | 1988..2416 | 100 | <- | Minus |
X | 4111643..4113467 | 163..1987 | 100 | <- | Minus |
X | 4113545..4113706 | 1..162 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4111156..4111584 | 1988..2416 | 100 | <- | Minus |
X | 4111643..4113467 | 163..1987 | 100 | <- | Minus |
X | 4113545..4113706 | 1..162 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4111156..4111584 | 1988..2416 | 100 | <- | Minus |
X | 4111643..4113467 | 163..1987 | 100 | <- | Minus |
X | 4113545..4113706 | 1..162 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 4005189..4005617 | 1988..2416 | 100 | <- | Minus |
arm_X | 4005676..4007500 | 163..1987 | 100 | <- | Minus |
arm_X | 4007578..4007739 | 1..162 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4119254..4119682 | 1988..2416 | 100 | <- | Minus |
X | 4119741..4121565 | 163..1987 | 100 | <- | Minus |
X | 4121643..4121804 | 1..162 | 100 | Minus |
Translation from 102 to 2342
> LD45754.pep MGRNQKQNFFAARKRQKRENGPKRTDRQAQPYEEIKRDNAFFIKYYQLQK ICATDEEWTQFLASIRDNLPTTFRVTGFKDEAKALLSIIETQLFTEYVRA VAELHQKAPEDVERPLCLPWYPNGLAYQLHLTRKDIRRSEPLYRLHNFLI VETTAGGISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHA APEEHKIPPGFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNL VTTKPDGSKAILKFDKILCDVPCSGDGTLRKNPDIWLKWNLAQAYNLHGI QYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDA GHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPA DEMAKIGLEKCLRVLPHLQDSGGFFVAVLEKRRQLSFEKNDVVELVKLNE TAKQPAAEPQVDADGKPIEEKSVPWGPQRKKRRLHGYKEDPYVFFGENDP DYQAIKEFYQLDESLSQRCLLTRCVTEKKKNIYYCSEPIRDLVLNNENNI KIINTGVKTFVRCENRHTVHPFRLAQEGLQTSNAFMGASRRIQVEREDLV MMLNCTDPTQPPSTHELKKETQERCKELGVGSCILKYVDQRFTLYTVGWR GTSSLRAYVQKDETIHILRLLGADLSKFETNKYEDARVAAAAAADAEVGK SAEAEADSSGDGDATESTFSGSGAIDVTVAAETTGTPMDTEVVATS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21493-PA | 737 | GF21493-PA | 1..684 | 1..683 | 3397 | 90.8 | Plus |
Dana\GF12515-PA | 896 | GF12515-PA | 422..648 | 152..431 | 222 | 25.4 | Plus |
Dana\GF15166-PA | 506 | GF15166-PA | 282..448 | 165..341 | 193 | 29.3 | Plus |
Dana\GF11004-PA | 441 | GF11004-PA | 222..389 | 171..350 | 169 | 32.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\EG:EG0007.9-PA | 738 | GG18560-PA | 1..736 | 1..745 | 3609 | 93.3 | Plus |
Dere\GG20307-PA | 897 | GG20307-PA | 418..644 | 152..431 | 220 | 25.4 | Plus |
Dere\GG24769-PA | 503 | GG24769-PA | 276..443 | 162..339 | 195 | 29.1 | Plus |
Dere\GG16283-PA | 439 | GG16283-PA | 221..393 | 171..350 | 163 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24818-PA | 729 | GH24818-PA | 1..679 | 1..687 | 3089 | 82.1 | Plus |
Dgri\GH21314-PA | 843 | GH21314-PA | 422..648 | 152..431 | 234 | 28 | Plus |
Dgri\GH11175-PA | 510 | GH11175-PA | 283..455 | 162..340 | 202 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nsun2-PA | 746 | CG6133-PA | 1..746 | 1..746 | 3903 | 100 | Plus |
CG8545-PA | 891 | CG8545-PA | 411..688 | 152..479 | 217 | 24.8 | Plus |
l(2)10685-PA | 503 | CG4749-PA | 276..443 | 162..339 | 196 | 29.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16150-PA | 725 | GI16150-PA | 1..691 | 1..687 | 3146 | 82.9 | Plus |
Dmoj\GI19747-PA | 839 | GI19747-PA | 401..627 | 152..431 | 244 | 28 | Plus |
Dmoj\GI17979-PA | 512 | GI17979-PA | 285..452 | 162..339 | 196 | 28 | Plus |
Dmoj\GI13435-PA | 443 | GI13435-PA | 200..443 | 154..436 | 180 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21386-PA | 730 | GL21386-PA | 1..682 | 1..684 | 3251 | 85.7 | Plus |
Dper\GL10113-PA | 934 | GL10113-PA | 427..644 | 161..431 | 221 | 25.8 | Plus |
Dper\GL15584-PA | 504 | GL15584-PA | 277..444 | 162..339 | 184 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19379-PA | 729 | GA19379-PA | 1..682 | 1..684 | 3250 | 85.7 | Plus |
Dpse\GA21153-PA | 934 | GA21153-PA | 427..644 | 161..431 | 222 | 25.8 | Plus |
Dpse\GA18402-PA | 504 | GA18402-PA | 277..444 | 162..339 | 187 | 29.7 | Plus |
Dpse\GA10764-PA | 438 | GA10764-PA | 224..419 | 171..380 | 167 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12703-PA | 744 | GM12703-PA | 1..742 | 1..745 | 3729 | 94.8 | Plus |
Dsec\GM21395-PA | 865 | GM21395-PA | 404..587 | 152..351 | 219 | 27.9 | Plus |
Dsec\GM16796-PA | 503 | GM16796-PA | 276..443 | 162..339 | 200 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\EG:EG0007.9-PA | 747 | GD16312-PA | 1..745 | 1..745 | 3802 | 96.2 | Plus |
Dsim\GD15057-PA | 440 | GD15057-PA | 222..379 | 171..334 | 165 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16427-PA | 725 | GJ16427-PA | 1..686 | 1..683 | 3142 | 83.9 | Plus |
Dvir\GJ18081-PA | 840 | GJ18081-PA | 406..680 | 152..479 | 234 | 27 | Plus |
Dvir\GJ19531-PA | 510 | GJ19531-PA | 283..450 | 162..339 | 196 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17644-PA | 742 | GK17644-PA | 1..741 | 1..741 | 3230 | 81.7 | Plus |
Dwil\GK17973-PA | 866 | GK17973-PA | 394..577 | 152..351 | 223 | 28.4 | Plus |
Dwil\GK20395-PA | 457 | GK20395-PA | 191..426 | 122..383 | 190 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\EG:EG0007.9-PA | 746 | GE16872-PA | 1..744 | 1..745 | 3648 | 94 | Plus |
Dyak\GE12467-PA | 902 | GE12467-PA | 421..647 | 152..431 | 221 | 26.1 | Plus |
Dyak\GE17352-PA | 504 | GE17352-PA | 277..444 | 162..339 | 194 | 29.1 | Plus |
Dyak\GE22645-PA | 440 | GE22645-PA | 222..394 | 171..350 | 171 | 31.4 | Plus |
Translation from 102 to 2342
> LD45754.hyp MGRNQKQNFFAARKRQKRENGPKRTDRQAQPYEEIKRDNAFFIKYYQLQK ICATDEEWTQFLASIRDNLPTTFRVTGFKDEAKALLSIIETQLFTEYVRA VAELHQKAPEDVERPLCLPWYPNGLAYQLHLTRKDIRRSEPLYRLHNFLI VETTAGGISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHA APEEHKIPPGFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNL VTTKPDGSKAILKFDKILCDVPCSGDGTLRKNPDIWLKWNLAQAYNLHGI QYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDA GHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPA DEMAKIGLEKCLRVLPHLQDSGGFFVAVLEKRRQLSFEKNDVVELVKLNE TAKQPAAEPQVDADGKPIEEKSVPWGPQRKKRRLHGYKEDPYVFFGENDP DYQAIKEFYQLDESLSQRCLLTRCVTEKKKNIYYCSEPIRDLVLNNENNI KIINTGVKTFVRCENRHTVHPFRLAQEGLQTSNAFMGASRRIQVEREDLV MMLNCTDPTQPPSTHELKKETQERCKELGVGSCILKYVDQRFTLYTVGWR GTSSLRAYVQKDETIHILRLLGADLSKFETNKYEDARVAAAAAADAEVGK SAEAEADSSGDGDATESTFSGSGAIDVTVAAETTGTPMDTEVVATS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nsun2-PA | 746 | CG6133-PA | 1..746 | 1..746 | 3903 | 100 | Plus |
CG8545-PA | 891 | CG8545-PA | 411..688 | 152..479 | 217 | 24.8 | Plus |
CG4749-PA | 503 | CG4749-PA | 276..443 | 162..339 | 196 | 29.7 | Plus |