Clone LD45776 Report

Search the DGRC for LD45776

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:457
Well:76
Vector:pOT2
Associated Gene/TranscriptStim-RA
Protein status:LD45776.pep: gold
Preliminary Size:2275
Sequenced Size:2257

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9126 2001-11-29 Blastp of sequenced clone
CG9126 2003-01-01 Sim4 clustering to Release 3
Stim 2008-04-29 Release 5.5 accounting
Stim 2008-08-15 Release 5.9 accounting
Stim 2008-12-18 5.12 accounting

Clone Sequence Records

LD45776.complete Sequence

2257 bp (2257 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069686

> LD45776.complete
ACACCGTTCAACCCAAACTGACTCGGGAATTTTAGGGATATCATCAGTTG
AAAACTATGACTTTCGCGAGCAACAAATTTGATTTGTAAACTTATAAGAA
ACCGAGCCGATTTACCGATTTAAAGGAGACATATGCGATAATTTGTATTG
AAGAAGTCCGCACACAATTCGTAACAATGCGAAAGAATACCATTTGGAAC
TACTCTTTAATATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGA
TCATGGCCCGCACACAGTATCAGTCGATTCGAATCGACACAACACACAGC
ATCAGTATAAGCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCAC
GAATCTGGTCAGAGTTTACACAATTCGCAATCGGAACATGTCACCCATAT
TGCCGCATCGCACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGC
AAAATCTGCACAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAG
GCTGTCAGCAATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGC
GTGTGCTGCTGATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCT
TTGGCATGGAGGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGAT
AATGGAAACATCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATT
GAAGTACGACTCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATG
ACGATATGCATATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCG
GAGGTGCATAATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTC
CGTTCAGCTGCCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTG
GCGCTGCCTTGCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAAT
GTACTTGGCATCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGC
AATGGATGTGGTTCTGTTTGGGCCACCGCGAGAAACTGGTACCCGCTGGA
AAGACTACATATTGGTAACACTGTTGCTTAGTGCTATTATTGGTTGTTGG
TACGCCTATCAGCAAAATAAGAATGCCAAACGGCATCTGCGTCGAATGGC
CCAGGATATGGAGGGATTGCAGAGGGCTGAGCAAAGTCTACAGGAGATGC
AGAAGGAACTAGAACGGGCCAGAATGGAGCAGGAAAATGTGGCAACAGAA
AAACTAGATTTGGAGCGTCGTCTAAAAGAAGCGCCCACTCTCAGTTCATC
GAACTCGGATTTGGAAGTTCAGCAGCTGAAAAAGGAAATCGAGATGTTGC
GCAACGAATTGTCCCGCGCCGAATTCGAGCTAGTAGACAACTGCTGGTCA
CCGCCGCCACAACTGCAATCATGGCTTCAATACACATATGAACTAGAAAG
TAAGAATCATCAGAAGAAGCGCACGTCGGCTGAGAAGCAGCTACAGTCGG
CCAGAGAGGCTTGTGAGAAATTGCGTAAGAAACGGTCAAGTTTGGTGGGT
GCGTTCGTTTCCACGCACGGAAAGAGTATTGATGATGTGGATCGGTCGAT
TGTTGAGGCACGGAATGCCCTCGGAGATGTAACAAACGAGCTGCAAGAAC
GACTGCATCGCTGGAAGCAAATCGAGACGTGCCTTGGCTTAAACATTGTG
AACAACAATGGTCTGCCCTACTTGGAGAATGTTCTGTACGGTCGAAATGG
GGGCTTACAAAGTTCCATGGGCATGAGTTCAACCAAGGGTTCTAGAGCAC
GTATTACCAACAGCACCGAAGACCTGGACGATGAGTCCATACAAGGTAAG
CTGAATTTTGAGAACTTTTCGCTGCTTGCCACGGAATAAGGCTTGTGCGC
TCGGTCTGTGAGGACAATAAAACCCAGCTCTTCAGAAAAGCATACTACTT
GACGAACTAAATAAAATTATAAAACCGCTTATTGAACCCTGAATGAAATC
TGTTTTACATTAAGCTACTGTATTAATGAAGGTCATATAACATTATGTGT
GTGTATGATATTTTAATCTTTATATTTGTAATATATCCATTTTATTTTTG
ATGTATACAAAATGTCATCTACTTAATTTTTTGTCAAAAACAACGAATAC
TATAAAACCATACTGAGTTTTGTACGTAACAATGAACTTATGAATGGTGA
TCCACTTAGTGGATTATTTAAATAAAGAAATAAAGTATTAAAAAAAAAAA
AAAAAAA

LD45776.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-RA 2442 Stim-RA 203..2442 1..2240 11200 100 Plus
Stim-RC 2036 Stim-RC 315..2036 519..2240 8610 100 Plus
Stim-RB 2419 Stim-RB 699..2419 520..2240 8605 100 Plus
Stim-RB 2419 Stim-RB 76..596 1..521 2605 100 Plus
Stim-RC 2036 Stim-RC 76..317 1..242 1210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15825263..15825856 1797..1204 2970 100 Minus
chrX 22417052 chrX 15828602..15829087 521..36 2415 99.8 Minus
chrX 22417052 chrX 15824747..15825190 2239..1796 2220 100 Minus
chrX 22417052 chrX 15826638..15826877 923..684 1170 99.2 Minus
chrX 22417052 chrX 15825921..15826096 1206..1031 865 99.4 Minus
chrX 22417052 chrX 15827437..15827600 683..520 820 100 Minus
chrX 22417052 chrX 15826165..15826282 1032..915 590 100 Minus
chrX 22417052 chrX 15830245..15830281 37..1 185 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15935417..15936010 1797..1204 2970 100 Minus
X 23542271 X 15938756..15939241 521..36 2430 100 Minus
X 23542271 X 15934899..15935344 2241..1796 2230 100 Minus
X 23542271 X 15936792..15937031 923..684 1170 99.2 Minus
X 23542271 X 15936075..15936250 1206..1031 880 100 Minus
X 23542271 X 15937591..15937754 683..520 820 100 Minus
X 23542271 X 15936319..15936436 1032..915 590 100 Minus
X 23542271 X 15940399..15940435 37..1 185 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15943515..15944108 1797..1204 2970 100 Minus
X 23527363 X 15946854..15947339 521..36 2430 100 Minus
X 23527363 X 15942997..15943442 2241..1796 2230 100 Minus
X 23527363 X 15944890..15945129 923..684 1170 99.1 Minus
X 23527363 X 15944173..15944348 1206..1031 880 100 Minus
X 23527363 X 15945689..15945852 683..520 820 100 Minus
X 23527363 X 15944417..15944534 1032..915 590 100 Minus
X 23527363 X 15948497..15948533 37..1 185 100 Minus
Blast to na_te.dros performed 2019-03-16 02:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1087..1153 2104..2043 134 71.6 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1344..1411 2115..2048 132 69.6 Minus

LD45776.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:29:15 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15824747..15825188 1798..2239 100 <- Minus
chrX 15825263..15825854 1206..1797 100 <- Minus
chrX 15825922..15826094 1033..1205 99 <- Minus
chrX 15826165..15826280 917..1032 100 <- Minus
chrX 15826645..15826877 684..916 100 <- Minus
chrX 15827437..15827600 520..683 100 <- Minus
chrX 15828604..15829086 37..519 99 <- Minus
chrX 15830246..15830281 1..36 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:17 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1..1713 177..1889 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:52 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1..1713 177..1889 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:58 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1..1713 177..1889 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:13 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1..1713 177..1889 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:12:01 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1..1713 177..1889 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:20 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1..2239 1..2239 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:51 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 76..2314 1..2239 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:58 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 17..2255 1..2239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:13 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 1..2239 1..2239 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:12:01 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
Stim-RA 17..2255 1..2239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:15 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
X 15936319..15936434 917..1032 100 <- Minus
X 15937591..15937754 520..683 100 <- Minus
X 15940400..15940435 1..36 100   Minus
X 15936799..15937031 684..916 100 <- Minus
X 15936076..15936248 1033..1205 100 <- Minus
X 15934901..15935342 1798..2239 100 <- Minus
X 15935417..15936008 1206..1797 100 <- Minus
X 15938758..15939240 37..519 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:15 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
X 15936319..15936434 917..1032 100 <- Minus
X 15937591..15937754 520..683 100 <- Minus
X 15940400..15940435 1..36 100   Minus
X 15936799..15937031 684..916 100 <- Minus
X 15936076..15936248 1033..1205 100 <- Minus
X 15934901..15935342 1798..2239 100 <- Minus
X 15935417..15936008 1206..1797 100 <- Minus
X 15938758..15939240 37..519 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:15 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
X 15936319..15936434 917..1032 100 <- Minus
X 15937591..15937754 520..683 100 <- Minus
X 15940400..15940435 1..36 100   Minus
X 15936799..15937031 684..916 100 <- Minus
X 15936076..15936248 1033..1205 100 <- Minus
X 15934901..15935342 1798..2239 100 <- Minus
X 15935417..15936008 1206..1797 100 <- Minus
X 15938758..15939240 37..519 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:58 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15830832..15831064 684..916 100 <- Minus
arm_X 15828934..15829375 1798..2239 100 <- Minus
arm_X 15829450..15830041 1206..1797 100 <- Minus
arm_X 15830109..15830281 1033..1205 100 <- Minus
arm_X 15830352..15830467 917..1032 100 <- Minus
arm_X 15831624..15831787 520..683 100 <- Minus
arm_X 15832791..15833273 37..519 100 <- Minus
arm_X 15834433..15834468 1..36 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:42 Download gff for LD45776.complete
Subject Subject Range Query Range Percent Splice Strand
X 15942999..15943440 1798..2239 100 <- Minus
X 15943515..15944106 1206..1797 100 <- Minus
X 15944174..15944346 1033..1205 100 <- Minus
X 15944417..15944532 917..1032 100 <- Minus
X 15944897..15945129 684..916 100 <- Minus
X 15945689..15945852 520..683 100 <- Minus
X 15946856..15947338 37..519 100 <- Minus
X 15948498..15948533 1..36 100   Minus

LD45776.pep Sequence

Translation from 176 to 1888

> LD45776.pep
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGKLNFENFSLLATE*

LD45776.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10709-PA 465 GF10709-PA 1..429 1..468 1812 78.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19358-PA 569 GG19358-PA 1..569 1..570 3035 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12177-PA 575 GH12177-PA 1..575 1..570 2333 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-PA 570 CG9126-PA 1..570 1..570 2971 100 Plus
Stim-PD 561 CG9126-PD 1..557 1..557 2907 100 Plus
Stim-PF 117 CG9126-PF 1..117 1..117 617 99.1 Plus
Stim-PG 117 CG9126-PG 1..117 1..117 617 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14178-PA 571 GI14178-PA 1..571 1..570 2338 78.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16222-PA 221 GL16222-PA 1..221 350..570 1089 92.3 Plus
Dper\GL16223-PA 101 GL16223-PA 24..101 170..247 426 98.7 Plus
Dper\GL16221-PA 81 GL16221-PA 1..81 276..360 374 82.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27643-PA 221 GA27643-PA 1..221 350..570 1089 92.3 Plus
Dpse\GA27864-PA 78 GA27864-PA 1..78 170..247 426 98.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22508-PA 577 GM22508-PA 1..568 1..568 3042 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15772-PA 111 GD15772-PA 81..111 540..570 155 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18461-PA 575 GJ18461-PA 1..575 1..570 2288 78.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16254-PA 959 GK16254-PA 4..597 5..565 2347 79.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16005-PA 569 GE16005-PA 1..569 1..570 3043 99.3 Plus

LD45776.hyp Sequence

Translation from 176 to 1888

> LD45776.hyp
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGKLNFENFSLLATE*

LD45776.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Stim-PA 570 CG9126-PA 1..570 1..570 2971 100 Plus
Stim-PD 561 CG9126-PD 1..557 1..557 2907 100 Plus
Stim-PF 117 CG9126-PF 1..117 1..117 617 99.1 Plus
Stim-PG 117 CG9126-PG 1..117 1..117 617 99.1 Plus