BDGP Sequence Production Resources |
Search the DGRC for LD45889
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 458 |
Well: | 89 |
Vector: | pOT2 |
Associated Gene/Transcript | PCNA-RA |
Protein status: | LD45889.pep: gold |
Preliminary Size: | 1164 |
Sequenced Size: | 1051 |
Gene | Date | Evidence |
---|---|---|
CG9193 | 2001-01-01 | Release 2 assignment |
CG9193 | 2002-06-13 | Blastp of sequenced clone |
CG9193 | 2003-01-01 | Sim4 clustering to Release 3 |
mus209 | 2008-04-29 | Release 5.5 accounting |
mus209 | 2008-08-15 | Release 5.9 accounting |
mus209 | 2008-12-18 | 5.12 accounting |
1051 bp (1051 high quality bases) assembled on 2002-06-13
GenBank Submission: AY122197
> LD45889.complete TAAAAAAAAAAAACAGCCCACGTTAATCATTCATCCCAAAGTCACAGCCG CGGTAACATTACTGCTGTTAAATTCTTAAGCCCGTCATCAGTATTTAAAT AATAAAACACATTCAATATGTTCGAGGCACGCCTGGGTCAAGCCACCATC CTGAAGAAGATCTTGGATGCCATCAAGGATCTGCTCAATGAGGCAACCTT CGATTGCAGCGACTCCGGCATTCAGCTACAGGCCATGGACAACTCCCATG TGTCGCTTGTCTCGCTGACCCTGCGTTCCGATGGCTTCGACAAGTTTCGC TGCGACCGCAATCTCTCCATGGGCATGAATCTGGGCAGCATGGCCAAGAT TCTGAAATGCGCCAACAACGAGGACAATGTGACGATGAAGGCGCAGGATA ACGCCGACACTGTCACCATCATGTTCGAATCGGCTAACCAGGAGAAGGTA TCGGACTACGAGATGAAACTGATGAACCTCGACCAGGAGCACCTGGGCAT ACCGGAGACAGACTTCTCGTGCGTGGTCCGCATGCCGGCCATGGAGTTCG CTCGCATCTGCCGCGATCTGGCGCAGTTCAGCGAATCCGTTGTGATCTGC TGCACCAAGGAGGGCGTCAAGTTCTCGGCCAGCGGCGATGTGGGCACCGC CAACATTAAGCTAGCCCAAACCGGCTCTGTCGACAAGGAGGAGGAGGCGG TGATCATCGAGATGCAGGAGCCGGTGACGCTGACATTTGCCTGTCGCTAC CTGAACGCCTTCACAAAGGCGACGCCATTGTCCACCCAAGTGCAGCTGTC GATGTGCGCAGATGTTCCGCTGGTAGTCGAGTATGCGATCAAGGATCTGG GTCACATTCGCTACTACCTGGCACCCAAGATCGAGGACAACGAGACATAA GTCAGCTGTGTTCCTCATATTTATGTCCCCGCATCGTCACCACTCATCTT CCCACGTTCACTTCATTCCTAACTTTTAAGTAAATCCGCATTTTTTGATC AATAAAAGCTATACTGTGTAATGTTAAAAAAAAAAAAAAAAAAAAAAAAA A
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16148791..16149590 | 226..1025 | 99 | <- | Minus |
chr2R | 16149651..16149875 | 1..225 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus209-RA | 1..783 | 118..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus209-RA | 1..783 | 118..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus209-RB | 1..783 | 118..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus209-RA | 1..783 | 118..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PCNA-RB | 1..783 | 118..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus209-RA | 20..1044 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus209-RA | 20..1044 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus209-RA | 46..1070 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mus209-RA | 20..1044 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PCNA-RA | 46..1070 | 1..1025 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20261754..20262553 | 226..1025 | 100 | <- | Minus |
2R | 20262614..20262838 | 1..225 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20261754..20262553 | 226..1025 | 100 | <- | Minus |
2R | 20262614..20262838 | 1..225 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20261754..20262553 | 226..1025 | 100 | <- | Minus |
2R | 20262614..20262838 | 1..225 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16149259..16150058 | 226..1025 | 100 | <- | Minus |
arm_2R | 16150119..16150343 | 1..225 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20262953..20263752 | 226..1025 | 100 | <- | Minus |
2R | 20263813..20264037 | 1..225 | 100 | Minus |
Translation from 117 to 899
> LD45889.pep MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSL TLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVT IMFESANQEKVSDYEMKLMNLDQEHLGIPETDFSCVVRMPAMEFARICRD LAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAVIIEMQ EPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYY LAPKIEDNET*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\mus209-PA | 260 | GF12678-PA | 1..260 | 1..260 | 1386 | 100 | Plus |
Dana\GF15480-PA | 255 | GF15480-PA | 1..252 | 1..257 | 879 | 58.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\mus209-PA | 260 | GG20875-PA | 1..260 | 1..260 | 1386 | 100 | Plus |
Dere\GG21617-PA | 255 | GG21617-PA | 1..255 | 1..260 | 872 | 58.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22744-PA | 260 | GH22744-PA | 1..260 | 1..260 | 1374 | 98.8 | Plus |
Dgri\GH13054-PA | 254 | GH13054-PA | 1..252 | 1..257 | 878 | 59.5 | Plus |
Dgri\GH23444-PA | 254 | GH23444-PA | 1..252 | 1..257 | 877 | 59.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PCNA-PA | 260 | CG9193-PA | 1..260 | 1..260 | 1324 | 100 | Plus |
PCNA-PB | 260 | CG9193-PB | 1..260 | 1..260 | 1324 | 100 | Plus |
PCNA2-PA | 255 | CG10262-PA | 1..252 | 1..257 | 788 | 55.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18526-PA | 260 | GI18526-PA | 1..260 | 1..260 | 1362 | 97.7 | Plus |
Dmoj\GI18198-PA | 255 | GI18198-PA | 1..255 | 1..260 | 910 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17573-PA | 260 | GL17573-PA | 1..260 | 1..260 | 1371 | 98.5 | Plus |
Dper\GL26136-PA | 255 | GL26136-PA | 1..252 | 1..257 | 866 | 56.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21602-PA | 260 | GA21602-PA | 1..260 | 1..260 | 1371 | 98.5 | Plus |
Dpse\GA10201-PA | 255 | GA10201-PA | 1..252 | 1..257 | 866 | 56.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\mus209-PA | 260 | GM19799-PA | 1..260 | 1..260 | 1383 | 99.6 | Plus |
Dsec\GM16995-PA | 255 | GM16995-PA | 1..252 | 1..257 | 822 | 56 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\mus209-PA | 260 | GD25292-PA | 1..260 | 1..260 | 1383 | 99.6 | Plus |
Dsim\GD21742-PA | 255 | GD21742-PA | 1..252 | 1..257 | 823 | 55.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\mus209-PA | 260 | GJ21392-PA | 1..260 | 1..260 | 1361 | 97.7 | Plus |
Dvir\GJ14692-PA | 259 | GJ14692-PA | 1..259 | 1..260 | 909 | 61 | Plus |
Translation from 117 to 899
> LD45889.hyp MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSL TLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVT IMFESANQEKVSDYEMKLMNLDQEHLGIPETDFSCVVRMPAMEFARICRD LAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAVIIEMQ EPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYY LAPKIEDNET*