Clone LD45906 Report

Search the DGRC for LD45906

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:459
Well:6
Vector:pOT2
Associated Gene/Transcripttemp-RA
Protein status:LD45906.pep: gold
Preliminary Size:2253
Sequenced Size:2194

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3073 2001-11-29 Blastp of sequenced clone
CG3073 2003-01-01 Sim4 clustering to Release 3
l(1)G0144 2008-04-29 Release 5.5 accounting
l(1)G0144 2008-08-15 Release 5.9 accounting
l(1)G0144 2008-12-18 5.12 accounting

Clone Sequence Records

LD45906.complete Sequence

2194 bp (2194 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069689

> LD45906.complete
CGGTTAGTAGGTTATCGTGGCAAGTGCCTCCTCTGTTGTTGTGCACACCA
AACACATGTTTGCAAACAAACATATGCTCACCGTCGCCAAAAAAAGGGAA
CACATTTCCGAGCTTGCGGACCGATCCGCCGGAGAACCGCGCTTTGGGGT
GAACCAGATTGACAGCCCCTCGCACTGGGCACTGAAATAATAATAATAAT
AAAGGCTAGATCTCGTGTCCAGGCCCCGGCTTAATTGAAATTTATTTGTT
GTGATGCGGCCGCCTTTGGGGGTTCCATAGTCGCGTAGACAGGGTTCCAG
CCTCCGCCATCTTCTCCTCTTCCTCCCCTTTCCAAATCTTAATTAACCGG
AGACATTGAGCATGTTCATATTAATTGGAGGCAATCAATGTGCCTGAGAC
CCTCGAATCGAACGGAACGGAAGCGAGATCCCCGAGGAAGCAAAAACCAC
ATCCCCATTGAAATTCCACGTTCGGACTATACTCAAATTCCATGGAGGAG
GAACGCAACGAGAAAAAGGTGCTCTGCGAGAAGATCATCAGGGACATCAA
TGCGGTGTTCCTCAAGGATCAGGATCTCGCCTCCTTTGAAATTATACCCA
AAGAAGCCAACTGCAACAAATCGCCGGTTGTGCATGTGGAGCACAATCTG
GGCCTGGAATCGTGGTGTGCCCAGCATGTCTACGACCACGCCCACCGCAC
CCTCATCTCCCATCGCCGTCAAACCACGGCGCAACAGCTGCGGACGCTGC
AGCAGCAGCAGCAGAGCGACTCCCTGGCCAAATACCTAAACGTGGCTCTG
CTGATTAATCCCGATGTGACCACCTTTTGGCACATCCGCCGTCAGCTGGT
GCAAAAGAATCGGCTGAGCATCAACAAGGAGCTGCAGTTCTCCGCACTCG
TGCTCTCAATCAAACCGAAGTCCAATGAAGCATTCGCCTACCGCCGTTGG
CTGTACTCATTTCAAAGTGCCGATGCTATTGACTGGCCCAATGAGATCGG
GATATGCGAAAGGGCCGCCGATAGATGCGCCAGCAACTATCACGCCTGGT
CGCACCGCCAGTGGATCCTTCAGAACGGCCCATGCCTGCTGCAATCGGAA
CTGCTACGCACGGAGAAGTTTATGCGGAAGCACATCAGTGACTACAGCTG
CTACCACTACCGCCAAGTGCTCCTGAGTCGTGCATATGAGCTCAGTTTTG
CCCTTCCCAAGGATTCCGGAGCCAGTGGTTCGTCTACGTTGGCCAGTCTG
CAGCATCTAATGACAAGCTATGGCCTGGAATGTGAAGCCAACGCTGAGGA
TCTGCTGGGTCTCTTGCTACCACATGTGGATCTGAGTTCCGTGAGCAAGC
AAAGGCTAATATCATTTCTTTACTGCTGCAACGTTGCCGCCAACGATATG
CGTCTGTGTGCCGAGCAGCGCTTGATGTACGGATCGCGGGATTGCTTCGA
GCTGCATCGCCGTGCGGCACTCAAGTTCATCGTGGAGCAGTGCGTGCGCC
TGCAAATGGGCTTGCCCAATGGCCAACTGTTACCAGTGGCGTCAGGCGAT
CTGCGTTCGCATTTGGGCAACTTTGACTTTGAAGATAATCCGTTTTTAAG
TGCCGTACGGCGCGAGGAGTCCACCCTGGGTGGTAAGCACCGGCGGTGGT
GCAATCTTCACCTCAGCTTTGGATATCCAGCGGACTAGACAGCGCGACCT
GATAAAGCTCAAATCAATCTACCCCAATAGAATTACTCACTCCCGGCCTT
TCCGTTTGCCCATCCGTTCTGAAATGTGGCAAGTGTATAAAGACGTGTGT
TTTATTTCCTATCTAATTATCGTCCCAAAAATACAGAAACTTGTGCAAGA
CAAATTGTTAAAGAGTAAAATACTAGAAAGGAAGACGATTCAAAACGGAT
TTGGAAACGGAAATGCCTCTATTCTACTCTACTATAAATGTGCGATCCAA
AGACAAAGTTCAACTAGCCCGATATGACAACGGATCTCACTGGTCCGCCA
ATTGCATTTCGATATCTATTAGCGTTACCTGTTCGTTTCTGTTCTTAATC
TGATCCGGGCACGATTTGTTAGCCCTTTGTTCAGAAGTAAAACTTAACCG
ATTATCGCCATGCCATGCACGTGTTTGTTGTTAGCCAATTGCAGTTAGTT
TTTAAATAAATCCAAATCATAGACGAAAAAAAAAAAAAAAAAAA

LD45906.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0144-RA 2287 l(1)G0144-RA 91..2266 1..2176 10880 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2154158..2155374 2175..959 6055 99.8 Minus
chrX 22417052 chrX 2155902..2156478 577..1 2840 99.5 Minus
chrX 22417052 chrX 2155415..2155805 968..578 1955 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2260206..2261423 2176..959 6060 99.8 Minus
X 23542271 X 2261951..2262527 577..1 2885 100 Minus
X 23542271 X 2261464..2261854 968..578 1955 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2268304..2269521 2176..959 6060 99.8 Minus
X 23527363 X 2270049..2270625 577..1 2885 100 Minus
X 23527363 X 2269562..2269952 968..578 1955 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:43:31 has no hits.

LD45906.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:44:57 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2154158..2155366 967..2175 100 <- Minus
chrX 2155417..2155805 578..966 100 <- Minus
chrX 2155902..2156478 1..577 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:26 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 1..1197 492..1688 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:54 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 1..1197 492..1688 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:41 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 1..1197 492..1688 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:18 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 1..1197 492..1688 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:38:57 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
temp-RA 1..1197 492..1688 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:24 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 1..2175 1..2175 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:54 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 1..2175 1..2175 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:41 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 1..2163 13..2175 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:18 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0144-RA 1..2175 1..2175 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:38:57 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
temp-RA 1..2163 13..2175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:44:57 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
X 2260207..2261415 967..2175 100 <- Minus
X 2261466..2261854 578..966 100 <- Minus
X 2261951..2262527 1..577 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:44:57 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
X 2260207..2261415 967..2175 100 <- Minus
X 2261466..2261854 578..966 100 <- Minus
X 2261951..2262527 1..577 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:44:57 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
X 2260207..2261415 967..2175 100 <- Minus
X 2261466..2261854 578..966 100 <- Minus
X 2261951..2262527 1..577 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:41 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2154240..2155448 967..2175 100 <- Minus
arm_X 2155499..2155887 578..966 100 <- Minus
arm_X 2155984..2156560 1..577 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:45 Download gff for LD45906.complete
Subject Subject Range Query Range Percent Splice Strand
X 2268305..2269513 967..2175 100 <- Minus
X 2269564..2269952 578..966 100 <- Minus
X 2270049..2270625 1..577 100   Minus

LD45906.hyp Sequence

Translation from 491 to 1687

> LD45906.hyp
MEEERNEKKVLCEKIIRDINAVFLKDQDLASFEIIPKEANCNKSPVVHVE
HNLGLESWCAQHVYDHAHRTLISHRRQTTAQQLRTLQQQQQSDSLAKYLN
VALLINPDVTTFWHIRRQLVQKNRLSINKELQFSALVLSIKPKSNEAFAY
RRWLYSFQSADAIDWPNEIGICERAADRCASNYHAWSHRQWILQNGPCLL
QSELLRTEKFMRKHISDYSCYHYRQVLLSRAYELSFALPKDSGASGSSTL
ASLQHLMTSYGLECEANAEDLLGLLLPHVDLSSVSKQRLISFLYCCNVAA
NDMRLCAEQRLMYGSRDCFELHRRAALKFIVEQCVRLQMGLPNGQLLPVA
SGDLRSHLGNFDFEDNPFLSAVRREESTLGGKHRRWCNLHLSFGYPAD*

LD45906.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
temp-PB 398 CG3073-PB 1..398 1..398 2104 100 Plus
temp-PA 398 CG3073-PA 1..398 1..398 2104 100 Plus

LD45906.pep Sequence

Translation from 491 to 1687

> LD45906.pep
MEEERNEKKVLCEKIIRDINAVFLKDQDLASFEIIPKEANCNKSPVVHVE
HNLGLESWCAQHVYDHAHRTLISHRRQTTAQQLRTLQQQQQSDSLAKYLN
VALLINPDVTTFWHIRRQLVQKNRLSINKELQFSALVLSIKPKSNEAFAY
RRWLYSFQSADAIDWPNEIGICERAADRCASNYHAWSHRQWILQNGPCLL
QSELLRTEKFMRKHISDYSCYHYRQVLLSRAYELSFALPKDSGASGSSTL
ASLQHLMTSYGLECEANAEDLLGLLLPHVDLSSVSKQRLISFLYCCNVAA
NDMRLCAEQRLMYGSRDCFELHRRAALKFIVEQCVRLQMGLPNGQLLPVA
SGDLRSHLGNFDFEDNPFLSAVRREESTLGGKHRRWCNLHLSFGYPAD*

LD45906.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21965-PA 404 GF21965-PA 1..404 1..398 1671 81.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12630-PA 398 GG12630-PA 1..398 1..398 1932 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12307-PA 408 GH12307-PA 8..401 6..394 1488 78.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
temp-PB 398 CG3073-PB 1..398 1..398 2104 100 Plus
temp-PA 398 CG3073-PA 1..398 1..398 2104 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21449-PA 409 GI21449-PA 1..406 1..394 1451 73.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13386-PA 411 GL13386-PA 1..404 1..397 1564 77.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15907-PA 411 GA15907-PA 1..404 1..397 1566 77.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18897-PA 398 GM18897-PA 1..398 1..398 2083 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16377-PA 398 GD16377-PA 1..398 1..398 2091 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16470-PA 408 GJ16470-PA 11..402 6..395 1508 78 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25761-PA 401 GK25761-PA 1..396 1..396 1570 76 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16959-PA 396 GE16959-PA 1..396 1..398 1972 93 Plus