Clone LD46023 Report

Search the DGRC for LD46023

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:460
Well:23
Vector:pOT2
Associated Gene/TranscriptCG7384-RA
Protein status:LD46023.pep: gold
Preliminary Size:2169
Sequenced Size:2257

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7384 2001-01-01 Release 2 assignment
CG7384 2001-10-10 Blastp of sequenced clone
CG7384 2008-04-29 Release 5.5 accounting
CG7384 2008-08-15 Release 5.9 accounting
CG7384 2008-12-18 5.12 accounting

Clone Sequence Records

LD46023.complete Sequence

2257 bp (2257 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061500

> LD46023.complete
GCGGCAATAACAAGCGAGGCTTCAATTCGCTTCCAGTGCAAAGAAGATTA
TTGCAGTTGCATTGCCGGGTGCGATCCGCCCAGTTGTCCACGTGTGAGTA
CGGATGATTGTCGATCGCTCGATCGATTTCATACAAAGTGTGTGAGGTGT
TTACCTCGAGTCCAGAAAGTCAAGACCAAAACGCAACGATGACGGGAACA
GCGGCAGTGCGACTCAGCATTACGATACCCACGAAGGCGGAGGAGGAGCG
CCTGAAGAAGGTGTACGTCCAGGTGGTCAATGGAGAGGTCGCCACGCCCA
TGGGTACCGCCAGCAGAACCTCAACCATTGAAAGCTTATCGACCATTCGG
ATCGGGGAATCCCCGGAACGGCAGAGCCACAAAGTCCTAAATACCTTGCC
AAAGATTGAAATTCAGACGTGCCACGATCAGCTGCTTGATATCCCACTGG
ACACGGACCAGGAGCAGGTGGTGCGCCAGATCCTGCACAGATTTCACATA
CCCAATGCCGTTTGGCTGCCCAGTCTAGAGGGTAATGCTTACCACATCAG
CTTCTCCATGGACTTTGACGAACGCTACGAGAATCTCTATGAGGCGCTGC
AGGAATTCGGCATCGGTGATCGTGAGGGATCTACAGTATCCGTGGTCAGC
TGCCTGGCCCACAGATCCTACGTTCAGCGTGAGGATACGGAGGAGCAGGA
GGACCAACCATCGAGCACAGAACACATCAATGCCCAGAAGCAGGGTATCT
GGGATCGGTTCATGAACTCGGTGCGATCCCGATTGAATGTGGCACAGATC
GTAAGGGATGTGCGCCAGGATGCGGCTATTACCTTCGACTTTTGCATACT
CCTAGTTTCGGCGGCAGTTCTGGCGAGCTTTGGCCTGGTGGAGAATAGCA
CGATTTTCCTGGCCTCCAGCATGCTCATTTCCCCACTGATGGGTCCCATA
ATAGCGGCCATCTTTGGAACTGTGATCCAGGATCGATCGCTCCGCAGGCT
GGGCATGCTGAACGAACTGATTGGTATACTGACCGCCACACTGGTGGGTT
TCCTATTCGGTCTGGTTGTGTGCACCACGGATCGCAAGTATGGCATTGGT
GAGGGACTGACGGAGGAGATGCTATCCCGCTGCGATCTGCACTCCCTCGT
CGTTGGGGTATTCACGGCCATACCGTCGGGAGCGGCGGCTGCCATCGGAA
TCCTGGGCGGGAATATTGGTTCTCTGGTTGGCGTGGCCATATCGGCATCG
CTGCTACCGCCTGCGGTTAACTCCGGTCTGCTGTGGGCGGTGGCCTGCAT
TTACAAGATATTCGAGAACGACGATTCGCTCTACGTGGATGTGATTAAAT
CGCGCCGCTACTCGGACAACCAGGCCACTGAATTGGCCGTGCTCGGCGGC
ATCAGCATGTGCCTAACTTTGTCCAACGTTCTGTGCGTCTATCTCATGGG
CATCCTGGTGCTGAAGGTAAAGGAGATTGCCCCGGTGATTGGGCGCAAAA
ACCGACAGTTCTGGAAGCACGACATAAAGCTGGCGCGTAATGGCAAAGTG
GAAACGGAGTCGGAGATACTCAACGAGCTAATAGCCAATCTGGCCACCGA
AGACAAGCACGCACTGGGCTCCATCAATCGTCAGTTCCTGCGCCATCTGG
ACGAATCAAACTACCAGCACACTTGGTCGCCGCTCAGCAACCGACATAGT
TTCTCAATGCCACAACCGCCTGGCGCCGGCATCTCCACCATCCATCGCCT
GGAACAATTGTATGCGTCGAGAATAGGGTTTAATCCACCAGCAGTAGAAC
GACGCCAACGCCACAGCGTAGTAAGCAGACCATCGCAACGGAGCCACGAG
GTCTCCGTTCAGCTGAGTCCTCCACAGCCACGTCCACGATTCGCGAGCAT
GCCATCGCAAGTGGGAAAGGACGAGCCAGCTAGGGATGCGGCCATCCAAG
TCGCGAGCTCCAAGAGATTTACGGTAACACCAGCTCGAGTGGACGAGCAG
ACCTAGAATGTTGTCAAGTCCATTTGGGTTTCCACTCTCACAGATCTTTG
TATAATATTTAAATAATGTAAGTGTCAATTTTGTAAAGTTAATTAGTTGT
TATACTCCAGCAGGGGGTATGTCCGTACAGAATCTGTGATAGTGCTAACC
TGCAATGGCGTCCATAGCATAGTTAAGCGTATATGTGTAATGTGCATCTT
TGTATAACAATTTCCAATAAAAAACTACAAGTCTAAAAAAAAAAAAAAAA
AAAAAAA

LD46023.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-RA 2346 CG7384-RA 110..2345 1..2236 11180 100 Plus
CG6094-RA 980 CG6094-RA 723..980 2236..1979 1290 100 Minus
CG12446-RA 2649 CG12446-RA 1107..1300 1102..1295 235 74.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10507085..10508099 1880..866 4850 98.5 Minus
chr2L 23010047 chr2L 10508521..10509241 721..1 3575 99.7 Minus
chr2L 23010047 chr2L 10506674..10507027 2234..1881 1740 99.4 Minus
chr2L 23010047 chr2L 10508315..10508458 865..722 705 99.3 Minus
chrX 22417052 chrX 22206651..22206844 1295..1102 235 74.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10508270..10509284 1880..866 5075 100 Minus
2L 23513712 2L 10509706..10510426 721..1 3605 100 Minus
2L 23513712 2L 10507857..10508212 2236..1881 1780 100 Minus
2L 23513712 2L 10509500..10509643 865..722 720 100 Minus
X 23542271 X 22810636..22810829 1295..1102 235 74.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10508270..10509284 1880..866 5075 100 Minus
2L 23513712 2L 10509706..10510426 721..1 3605 100 Minus
2L 23513712 2L 10507857..10508212 2236..1881 1780 100 Minus
2L 23513712 2L 10509500..10509643 865..722 720 100 Minus
X 23527363 X 22795728..22795921 1295..1102 235 74.7 Minus
Blast to na_te.dros performed on 2019-03-16 11:24:03 has no hits.

LD46023.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:24:54 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10506674..10507027 1881..2234 99 <- Minus
chr2L 10507085..10508099 866..1880 98 <- Minus
chr2L 10508315..10508458 722..865 99 <- Minus
chr2L 10508521..10509241 1..721 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:31 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 1..1818 189..2006 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:08 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 1..1818 189..2006 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:44:44 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 1..1818 189..2006 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:07:55 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 1..1818 189..2006 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:43 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 1..1818 189..2006 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:20:23 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 36..2269 1..2234 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:08 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 36..2269 1..2234 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:44:44 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 28..2261 1..2234 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:07:55 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 36..2269 1..2234 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:43 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7384-RA 28..2261 1..2234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:54 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507859..10508212 1881..2234 100 <- Minus
2L 10508270..10509284 866..1880 100 <- Minus
2L 10509500..10509643 722..865 100 <- Minus
2L 10509706..10510426 1..721 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:54 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507859..10508212 1881..2234 100 <- Minus
2L 10508270..10509284 866..1880 100 <- Minus
2L 10509500..10509643 722..865 100 <- Minus
2L 10509706..10510426 1..721 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:54 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507859..10508212 1881..2234 100 <- Minus
2L 10508270..10509284 866..1880 100 <- Minus
2L 10509500..10509643 722..865 100 <- Minus
2L 10509706..10510426 1..721 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:44:44 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507859..10508212 1881..2234 100 <- Minus
arm_2L 10508270..10509284 866..1880 100 <- Minus
arm_2L 10509500..10509643 722..865 100 <- Minus
arm_2L 10509706..10510426 1..721 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:08 Download gff for LD46023.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507859..10508212 1881..2234 100 <- Minus
2L 10508270..10509284 866..1880 100 <- Minus
2L 10509500..10509643 722..865 100 <- Minus
2L 10509706..10510426 1..721 100   Minus

LD46023.pep Sequence

Translation from 188 to 2005

> LD46023.pep
MTGTAAVRLSITIPTKAEEERLKKVYVQVVNGEVATPMGTASRTSTIESL
STIRIGESPERQSHKVLNTLPKIEIQTCHDQLLDIPLDTDQEQVVRQILH
RFHIPNAVWLPSLEGNAYHISFSMDFDERYENLYEALQEFGIGDREGSTV
SVVSCLAHRSYVQREDTEEQEDQPSSTEHINAQKQGIWDRFMNSVRSRLN
VAQIVRDVRQDAAITFDFCILLVSAAVLASFGLVENSTIFLASSMLISPL
MGPIIAAIFGTVIQDRSLRRLGMLNELIGILTATLVGFLFGLVVCTTDRK
YGIGEGLTEEMLSRCDLHSLVVGVFTAIPSGAAAAIGILGGNIGSLVGVA
ISASLLPPAVNSGLLWAVACIYKIFENDDSLYVDVIKSRRYSDNQATELA
VLGGISMCLTLSNVLCVYLMGILVLKVKEIAPVIGRKNRQFWKHDIKLAR
NGKVETESEILNELIANLATEDKHALGSINRQFLRHLDESNYQHTWSPLS
NRHSFSMPQPPGAGISTIHRLEQLYASRIGFNPPAVERRQRHSVVSRPSQ
RSHEVSVQLSPPQPRPRFASMPSQVGKDEPARDAAIQVASSKRFTVTPAR
VDEQT*

LD46023.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14088-PA 617 GF14088-PA 1..611 1..604 2546 80.6 Plus
Dana\GF22161-PA 707 GF22161-PA 101..492 92..498 980 47.9 Plus
Dana\GF15744-PA 114 GF15744-PA 12..107 267..361 199 43.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10378-PA 607 GG10378-PA 1..606 1..604 3012 93.9 Plus
Dere\GG17508-PA 697 GG17508-PA 74..501 68..497 927 45.4 Plus
Dere\GG10085-PA 493 GG10085-PA 136..482 83..431 609 37 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10106-PA 605 GH10106-PA 1..601 1..602 1875 60.3 Plus
Dgri\GH12868-PA 648 GH12868-PA 48..499 81..522 895 45.2 Plus
Dgri\GH11075-PA 138 GH11075-PA 3..127 314..431 259 40.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-PA 605 CG7384-PA 1..605 1..605 3063 100 Plus
CG12446-PA 709 CG12446-PA 3..510 5..506 971 44 Plus
CG34109-PC 800 CG34109-PC 157..519 92..450 608 36 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14424-PA 626 GI14424-PA 1..619 1..599 1820 59.3 Plus
Dmoj\GI14964-PA 714 GI14964-PA 68..488 81..498 966 46 Plus
Dmoj\GI17594-PA 288 GI17594-PA 138..277 295..431 253 38.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26408-PA 613 GL26408-PA 1..610 1..600 2233 75.1 Plus
Dper\GL16449-PA 209 GL16449-PA 119..203 164..256 188 57 Plus
Dper\GL16364-PA 337 GL16364-PA 106..333 212..434 171 25.9 Plus
Dper\GL16451-PA 203 GL16451-PA 1..90 407..502 154 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20313-PA 613 GA20313-PA 1..612 1..602 2237 75 Plus
Dpse\GA22580-PA 556 GA22580-PA 126..443 178..502 717 48.9 Plus
Dpse\GA27728-PA 337 GA27728-PA 106..333 212..434 169 25.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11619-PA 605 GM11619-PA 1..605 1..605 3158 97.7 Plus
Dsec\GM10058-PA 695 GM10058-PA 2..496 4..506 966 43.2 Plus
Dsec\GM17938-PA 608 GM17938-PA 156..523 83..450 631 36 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22247-PA 605 GD22247-PA 1..605 1..605 3151 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16264-PA 596 GJ16264-PA 1..589 1..599 1833 61.7 Plus
Dvir\GJ18929-PA 700 GJ18929-PA 100..496 92..498 900 48.7 Plus
Dvir\GJ17938-PA 334 GJ17938-PA 200..334 181..314 290 40.7 Plus
Dvir\GJ17939-PA 402 GJ17939-PA 1..138 322..450 268 39.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15562-PA 593 GK15562-PA 1..590 1..599 1895 62.7 Plus
Dwil\GK19837-PA 775 GK19837-PA 95..524 81..498 932 44.9 Plus
Dwil\GK24010-PA 317 GK24010-PA 136..311 83..268 303 34.9 Plus
Dwil\GK18406-PA 127 GK18406-PA 29..123 268..361 194 45.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13550-PA 608 GE13550-PA 1..607 1..604 3024 94.4 Plus
Dyak\GE15263-PA 695 GE15263-PA 2..496 4..506 979 42.6 Plus
Dyak\GE17987-PA 108 GE17987-PA 1..95 268..361 184 44.2 Plus

LD46023.hyp Sequence

Translation from 188 to 2005

> LD46023.hyp
MTGTAAVRLSITIPTKAEEERLKKVYVQVVNGEVATPMGTASRTSTIESL
STIRIGESPERQSHKVLNTLPKIEIQTCHDQLLDIPLDTDQEQVVRQILH
RFHIPNAVWLPSLEGNAYHISFSMDFDERYENLYEALQEFGIGDREGSTV
SVVSCLAHRSYVQREDTEEQEDQPSSTEHINAQKQGIWDRFMNSVRSRLN
VAQIVRDVRQDAAITFDFCILLVSAAVLASFGLVENSTIFLASSMLISPL
MGPIIAAIFGTVIQDRSLRRLGMLNELIGILTATLVGFLFGLVVCTTDRK
YGIGEGLTEEMLSRCDLHSLVVGVFTAIPSGAAAAIGILGGNIGSLVGVA
ISASLLPPAVNSGLLWAVACIYKIFENDDSLYVDVIKSRRYSDNQATELA
VLGGISMCLTLSNVLCVYLMGILVLKVKEIAPVIGRKNRQFWKHDIKLAR
NGKVETESEILNELIANLATEDKHALGSINRQFLRHLDESNYQHTWSPLS
NRHSFSMPQPPGAGISTIHRLEQLYASRIGFNPPAVERRQRHSVVSRPSQ
RSHEVSVQLSPPQPRPRFASMPSQVGKDEPARDAAIQVASSKRFTVTPAR
VDEQT*

LD46023.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7384-PA 605 CG7384-PA 1..605 1..605 3063 100 Plus
CG12446-PA 709 CG12446-PA 3..510 5..506 971 44 Plus
CG34109-PC 800 CG34109-PC 157..519 92..450 608 36 Plus