Clone LD46082 Report

Search the DGRC for LD46082

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:460
Well:82
Vector:pOT2
Associated Gene/TranscriptCbl-RA
Protein status:LD46082.pep: gold
Preliminary Size:2675
Sequenced Size:1528

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7037 2002-01-01 Sim4 clustering to Release 2
CG7037 2002-06-04 Blastp of sequenced clone
CG7037 2003-01-01 Sim4 clustering to Release 3
Cbl 2008-04-29 Release 5.5 accounting
Cbl 2008-08-15 Release 5.9 accounting
Cbl 2008-12-18 5.12 accounting

Clone Sequence Records

LD46082.complete Sequence

1528 bp (1528 high quality bases) assembled on 2002-06-04

GenBank Submission: AY118593

> LD46082.complete
CGCAGCGGCAGAGAGAAAAGATGGCGACGAGAGGCAGTGGAACCCGTGTG
CAATCGCAGCCAAAGATTTTCCCATCGCTGCTTTCCAAGCTGCACGGCGC
TATCTCGGAAGCCTGCGTCTCGCAGCGTCTGTCCACCGACAAGAAGACGC
TGGAGAAGACCTGGAAGTTGATGGACAAGGTGGTCAAACTGTGCCAGCAG
CCGAAGATGAATCTTAAGAATAGTCCACCGTTTATTTTGGACATCCTGCC
GGATACGTACCAGCGCCTGAGATTGATCTACTCAAAGAACGAGGACCAGA
TGCACCTGCTCCATGCCAACGAGCACTTCAACGTGTTCATCAACAACCTG
ATGCGAAAGTGCAAGCAGGCCATCAAGTTGTTCAAGGAGGGCAAGGAGAA
GATGTTCGACGAGAACTCCCACTACCGCCGCAATCTCACCAAGCTCAGCC
TGGTCTTCTCCCACATGCTCAGCGAACTGAAGGCCATATTCCCCAACGGT
GTCTTTGCCGGGGATCAATTTCGGATCACCAAAGCGGATGCGGCTGACTT
TTGGAAGAGCAACTTCGGTAACAGCACATTGGTTCCCTGGAAAATCTTCC
GGCAGGAGCTTAACAAAGTACATCCCATAATCTCCGGCCTGGAGGCCATG
GCCCTAAAGACCACTATCGATCTTACCTGCAACGACTTCATTTCCAACTT
CGAGTTCGACGTCTTCACACGCCTCTTCCAGCCTTGGGTGACCCTGCTAC
GCAACTGGCAGATTCTGGCCGTCACACATCCGGGCTACGTGGCGTTTCTC
ACATACGACGAGGTGAAGGCTCGCCTACAGCGCTACATCCTCAAGGCGGG
CAGCTACGTTTTCCGGCTCTCCTGCACGCGATTGGGCCAATGGGCCATCG
GCTACGTAACTGCCGAGGGAGAGATTCTGCAGACAATCCCTCAGAACAAG
TCGCTGTGCCAGGCGCTGCTCGATGGCCATCGAGAGGGCTTCTACTTGTA
CCCAGATGGCCAAGCGTACAATCCGGATCTGTCGTCTGCCGTTCAAAGTC
CCACAGAGGACCACATAACCGTTACCCAAGAGCAATACGAACTATACTGT
GAAATGGGCAGCACCTTTCAGCTGTGCAAAATCTGTGCGGAGAACGACAA
AGATATCCGCATCGAGCCCTGTGGCCACTTGTTGTGCACTCCCTGCCTTA
CCTCCTGGCAAGTGGATTCCGAGGGACAGGGCTGCCCCTTCTGTCGGGCC
GAAATCAAGGGCACCGAACAAATCGTTGTGGACGCTTTCGATCCGCGCAA
GCAACACAACCGGAACGTCACCAATGGGCGACAGCAGCAGCAGGAAGAAG
ACGACACTGAGGTATAGTTTTGTTCACAGCCTGATCAGCCTGATCCGCCT
GCTCCGCTGCCGCCTGTGCTGCTATTTATATACATATTACTCTTATGATT
ACCTTTGGTTCGTTTATACAGTTATATATGCCTATATATACATTATATAT
TTTAGATTTTAAAAAAAAAAAAAAAAAA

LD46082.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-RA 3044 Cbl-RA 389..1899 1..1511 7555 100 Plus
Cbl.a 4957 Cbl.a 389..1750 1..1362 6810 100 Plus
Cbl-RB 3933 Cbl-RB 389..1750 1..1362 6810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8417280..8417853 1..574 2870 100 Plus
chr3L 24539361 chr3L 8418396..8418806 572..982 2040 99.8 Plus
chr3L 24539361 chr3L 8419262..8419545 1227..1510 1420 100 Plus
chr3L 24539361 chr3L 8418894..8419020 982..1108 620 99.2 Plus
chr3L 24539361 chr3L 8419084..8419207 1107..1230 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8425289..8425862 1..574 2870 100 Plus
3L 28110227 3L 8426403..8426813 572..982 2055 100 Plus
3L 28110227 3L 8427269..8427553 1227..1511 1425 100 Plus
3L 28110227 3L 8426901..8427027 982..1108 635 100 Plus
3L 28110227 3L 8427091..8427214 1107..1230 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8418389..8418962 1..574 2870 100 Plus
3L 28103327 3L 8419503..8419913 572..982 2055 100 Plus
3L 28103327 3L 8420369..8420653 1227..1511 1425 100 Plus
3L 28103327 3L 8420001..8420127 982..1108 635 100 Plus
3L 28103327 3L 8420191..8420314 1107..1230 620 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:55:37 has no hits.

LD46082.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:56:24 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8417280..8417853 1..574 100 -> Plus
chr3L 8418399..8418806 575..982 99 -> Plus
chr3L 8418895..8419019 983..1107 99 -> Plus
chr3L 8419085..8419206 1108..1229 100 -> Plus
chr3L 8419265..8419545 1230..1510 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:34 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 1..1347 21..1367 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:32:47 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 1..1347 21..1367 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:03:37 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 1..1347 21..1367 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:23:34 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 1..1347 21..1367 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:36 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 1..1347 21..1367 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:03:21 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 345..1854 1..1510 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:32:47 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 345..1854 1..1510 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:37 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 336..1845 1..1510 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:23:35 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 345..1854 1..1510 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:36 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 336..1845 1..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:24 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8425289..8425862 1..574 100 -> Plus
3L 8426406..8426813 575..982 100 -> Plus
3L 8426902..8427026 983..1107 100 -> Plus
3L 8427092..8427213 1108..1229 100 -> Plus
3L 8427272..8427552 1230..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:24 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8425289..8425862 1..574 100 -> Plus
3L 8426406..8426813 575..982 100 -> Plus
3L 8426902..8427026 983..1107 100 -> Plus
3L 8427092..8427213 1108..1229 100 -> Plus
3L 8427272..8427552 1230..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:24 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8425289..8425862 1..574 100 -> Plus
3L 8426406..8426813 575..982 100 -> Plus
3L 8426902..8427026 983..1107 100 -> Plus
3L 8427092..8427213 1108..1229 100 -> Plus
3L 8427272..8427552 1230..1510 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:37 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8420002..8420126 983..1107 100 -> Plus
arm_3L 8420192..8420313 1108..1229 100 -> Plus
arm_3L 8420372..8420652 1230..1510 100   Plus
arm_3L 8418389..8418962 1..574 100 -> Plus
arm_3L 8419506..8419913 575..982 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:56:47 Download gff for LD46082.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8418389..8418962 1..574 100 -> Plus
3L 8419506..8419913 575..982 100 -> Plus
3L 8420002..8420126 983..1107 100 -> Plus
3L 8420192..8420313 1108..1229 100 -> Plus
3L 8420372..8420652 1230..1510 100   Plus

LD46082.hyp Sequence

Translation from 2 to 1366

> LD46082.hyp
QRQREKMATRGSGTRVQSQPKIFPSLLSKLHGAISEACVSQRLSTDKKTL
EKTWKLMDKVVKLCQQPKMNLKNSPPFILDILPDTYQRLRLIYSKNEDQM
HLLHANEHFNVFINNLMRKCKQAIKLFKEGKEKMFDENSHYRRNLTKLSL
VFSHMLSELKAIFPNGVFAGDQFRITKADAADFWKSNFGNSTLVPWKIFR
QELNKVHPIISGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWVTLLR
NWQILAVTHPGYVAFLTYDEVKARLQRYILKAGSYVFRLSCTRLGQWAIG
YVTAEGEILQTIPQNKSLCQALLDGHREGFYLYPDGQAYNPDLSSAVQSP
TEDHITVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLT
SWQVDSEGQGCPFCRAEIKGTEQIVVDAFDPRKQHNRNVTNGRQQQQEED
DTEV*

LD46082.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-PA 448 CG7037-PA 1..448 7..454 2386 100 Plus
Cbl-PB 878 CG7037-PB 1..447 7..453 2382 100 Plus

LD46082.pep Sequence

Translation from 20 to 1366

> LD46082.pep
MATRGSGTRVQSQPKIFPSLLSKLHGAISEACVSQRLSTDKKTLEKTWKL
MDKVVKLCQQPKMNLKNSPPFILDILPDTYQRLRLIYSKNEDQMHLLHAN
EHFNVFINNLMRKCKQAIKLFKEGKEKMFDENSHYRRNLTKLSLVFSHML
SELKAIFPNGVFAGDQFRITKADAADFWKSNFGNSTLVPWKIFRQELNKV
HPIISGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWVTLLRNWQILA
VTHPGYVAFLTYDEVKARLQRYILKAGSYVFRLSCTRLGQWAIGYVTAEG
EILQTIPQNKSLCQALLDGHREGFYLYPDGQAYNPDLSSAVQSPTEDHIT
VTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVDS
EGQGCPFCRAEIKGTEQIVVDAFDPRKQHNRNVTNGRQQQQEEDDTEV*

LD46082.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24399-PA 856 GF24399-PA 1..441 1..447 2401 96.6 Plus
Dana\GF25100-PA 442 GF25100-PA 1..442 1..448 2336 96.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14313-PA 873 GG14313-PA 1..447 1..447 2492 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15065-PA 908 GH15065-PA 1..446 1..447 2398 96 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-PA 448 CG7037-PA 1..448 1..448 2386 100 Plus
Cbl-PB 878 CG7037-PB 1..447 1..447 2382 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12833-PA 911 GI12833-PA 1..446 1..447 2408 96.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24706-PA 860 GL24706-PA 1..420 1..437 2170 92 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20050-PA 889 GA20050-PA 1..446 1..447 2443 98.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25056-PA 1957 GM25056-PA 3..87 100..184 465 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14094-PA 596 GD14094-PA 1..447 1..447 2452 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12975-PA 893 GJ12975-PA 1..446 1..447 2407 96.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18041-PA 947 GK18041-PA 1..447 1..447 2484 98.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20742-PA 886 GE20742-PA 1..447 1..447 2494 100 Plus
Dyak\GE11301-PA 194 GE11301-PA 24..114 110..200 457 92.3 Plus
Dyak\GE11304-PA 209 GE11304-PA 1..73 128..200 394 97.3 Plus
Dyak\GE11303-PA 61 GE11303-PA 1..61 51..111 319 96.7 Plus