Clone LD46084 Report

Search the DGRC for LD46084

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:460
Well:84
Vector:pOT2
Associated Gene/TranscriptMED4-RA
Protein status:LD46084.pep: gold
Preliminary Size:1135
Sequenced Size:937

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8609 2001-01-01 Release 2 assignment
CG8609 2001-10-10 Blastp of sequenced clone
CG8609 2003-01-01 Sim4 clustering to Release 3
MED4 2008-04-29 Release 5.5 accounting
MED4 2008-08-15 Release 5.9 accounting
MED4 2008-12-18 5.12 accounting

Clone Sequence Records

LD46084.complete Sequence

937 bp (937 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061502

> LD46084.complete
CGGTGTGGAAAATAAACAAATTGCAATTATTGCTTAGCACAAACGATTTG
CCGTGATAATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTCTGCTCCTG
ATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAGGCGCACCA
GAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCTGGTGGCCA
AAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGCAGGCGAAA
GTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTGCACGACCG
TGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCTCATACTGT
CCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCAATCAGGCC
AACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCACATCGGAT
TAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCATAGGTGACC
TGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGCTGCTGGGT
AAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAGAACAGCGG
CATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGGAAGTGGGA
GTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGAACCAGTTT
AACTGGAATCTCGGAGAGCTGCACATGACCATGGGCGCCTCTGGGAACAC
AGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAGGTCATGTCCACGG
ATAGCTCAAGCTCCAGTTCCAGCGATTCGCAGTAGAATTGGATAAAAAAC
TATAACTAAATCTCGTTTAAGCTAGTAGTATTAGGTATTTAATAAAAGCG
CGCTGTAAGGAAGTCTAAAAAAAAAAAAAAAAAAAAA

LD46084.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-RA 999 MED4-RA 49..965 1..917 4585 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7241684..7242304 916..296 3090 99.8 Minus
chr3L 24539361 chr3L 7242362..7242657 296..1 1480 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:42:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7249528..7250149 917..296 3110 100 Minus
3L 28110227 3L 7250207..7250502 296..1 1480 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7242628..7243249 917..296 3110 100 Minus
3L 28103327 3L 7243307..7243602 296..1 1480 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:40:53 has no hits.

LD46084.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:41:52 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7241684..7242304 296..916 99 <- Minus
chr3L 7242363..7242657 1..295 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:29:36 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 1..777 59..835 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:56:01 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 1..777 59..835 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:07 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 1..777 59..835 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:25:10 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 1..777 59..835 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:16:33 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 1..777 59..835 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:56 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 22..937 1..916 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:56:01 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 22..937 1..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:07 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 26..941 1..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:25:10 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 22..937 1..916 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:16:33 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 26..941 1..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:41:52 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7249529..7250149 296..916 100 <- Minus
3L 7250208..7250502 1..295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:41:52 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7249529..7250149 296..916 100 <- Minus
3L 7250208..7250502 1..295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:41:52 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7249529..7250149 296..916 100 <- Minus
3L 7250208..7250502 1..295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:07 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7242629..7243249 296..916 100 <- Minus
arm_3L 7243308..7243602 1..295 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:02:21 Download gff for LD46084.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7242629..7243249 296..916 100 <- Minus
3L 7243308..7243602 1..295 100   Minus

LD46084.pep Sequence

Translation from 58 to 834

> LD46084.pep
MSFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDE
EFRKMLELAEEQAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTA
IFQARQKLASINQANKRPVSSEELIKYAHRISSANAVSAPLTWCIGDLRR
PYPTDIEMRNGLLGKSEQNINGGTVTHQNSGMPSEQQRTLSGSAGSGSGS
GAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALETRAQDDVEVMSTDSS
SSSSSDSQ*

LD46084.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23865-PA 257 GF23865-PA 1..244 1..245 1087 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14986-PA 258 GG14986-PA 1..258 1..258 1343 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16206-PA 261 GH16206-PA 1..248 1..245 1118 89.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-PA 258 CG8609-PA 1..258 1..258 1281 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13352-PA 261 GI13352-PA 1..248 1..245 1106 88.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24898-PA 256 GL24898-PA 1..243 1..245 1111 90.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21204-PA 256 GA21204-PA 1..243 1..245 1111 90.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13780-PA 258 GM13780-PA 1..258 1..258 1351 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13079-PA 258 GD13079-PA 1..258 1..258 1351 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13182-PA 261 GJ13182-PA 1..248 1..245 1098 88.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13126-PA 267 GK13126-PA 1..254 1..245 1029 86.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20432-PA 258 GE20432-PA 1..258 1..258 1347 99.2 Plus

LD46084.hyp Sequence

Translation from 58 to 834

> LD46084.hyp
MSFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDE
EFRKMLELAEEQAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTA
IFQARQKLASINQANKRPVSSEELIKYAHRISSANAVSAPLTWCIGDLRR
PYPTDIEMRNGLLGKSEQNINGGTVTHQNSGMPSEQQRTLSGSAGSGSGS
GAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALETRAQDDVEVMSTDSS
SSSSSDSQ*

LD46084.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-PA 258 CG8609-PA 1..258 1..258 1281 100 Plus